Wall clock time and date at job start Mon Mar 30 2020 01:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47197 * 2 1 4 4 H 1.09003 * 109.47250 * 185.15612 * 3 2 1 5 5 C 1.50696 * 109.46881 * 305.15830 * 3 2 1 6 6 H 1.08012 * 119.99736 * 120.00065 * 5 3 2 7 7 C 1.37870 * 120.00594 * 300.00094 * 5 3 2 8 8 N 1.31519 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00411 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46862 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47221 * 119.99378 * 9 7 5 12 12 H 1.48496 * 109.47150 * 239.99719 * 9 7 5 13 13 N 1.46905 * 109.46958 * 65.16065 * 3 2 1 14 14 C 1.46899 * 110.99623 * 85.89797 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.84752 * 14 13 3 16 16 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 17 17 N 1.29742 * 126.29601 * 90.02276 * 16 15 14 18 18 O 1.41347 * 109.73807 * 180.02562 * 17 16 15 19 19 C 1.34816 * 109.33924 * 359.97438 * 18 17 16 20 20 C 1.38982 * 133.46322 * 180.02562 * 19 18 17 21 21 C 1.37805 * 119.79733 * 179.21511 * 20 19 18 22 22 C 1.38779 * 120.59948 * 0.68951 * 21 20 19 23 23 C 1.36624 * 120.51523 * 359.54229 * 22 21 20 24 24 C 1.39689 * 119.79278 * 0.02562 * 23 22 21 25 25 H 1.08994 * 109.46902 * 174.84279 * 1 2 3 26 26 H 1.08998 * 109.47160 * 54.84902 * 1 2 3 27 27 H 1.08992 * 109.46770 * 294.84571 * 1 2 3 28 28 H 1.08998 * 109.47172 * 120.00311 * 2 1 3 29 29 H 1.09008 * 109.47334 * 240.00074 * 2 1 3 30 30 H 0.96996 * 119.99781 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99774 * 321.94789 * 13 3 2 32 32 H 1.08995 * 109.47219 * 294.84452 * 14 13 3 33 33 H 1.08999 * 109.47280 * 54.85128 * 14 13 3 34 34 H 1.09007 * 109.47640 * 300.00130 * 15 14 13 35 35 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 36 36 H 1.08000 * 120.09588 * 359.97045 * 20 19 18 37 37 H 1.07995 * 119.69808 * 180.23138 * 21 20 19 38 38 H 1.08007 * 119.74537 * 179.55979 * 22 21 20 39 39 H 1.08000 * 120.10479 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1262 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1616 6 1 0.8269 3.0628 -0.9839 7 6 1.6611 1.7560 -2.4511 8 7 2.4034 0.6920 -2.6675 9 14 0.9131 2.6815 -3.8910 10 1 0.1267 3.8345 -3.3835 11 1 1.9963 3.1734 -4.7798 12 1 0.0211 1.7721 -4.6543 13 7 1.6547 2.0981 1.2569 14 6 2.6433 1.8366 2.3116 15 6 2.2773 2.6367 3.5632 16 6 3.2917 2.3690 4.6451 17 7 4.3861 3.0341 4.8534 18 8 5.0759 2.4842 5.9578 19 6 4.3763 1.4406 6.4466 20 6 4.5855 0.5591 7.5005 21 6 3.6550 -0.4216 7.7679 22 6 2.5160 -0.5470 6.9851 23 6 2.2940 0.3064 5.9415 24 6 3.2203 1.3131 5.6591 25 1 -0.3633 -1.0235 -0.0924 26 1 -0.3633 0.5916 -0.8402 27 1 -0.3632 0.4318 0.9325 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 2.5620 0.3877 -3.5747 31 1 0.7321 1.8104 1.5467 32 1 2.6484 0.7728 2.5490 33 1 3.6323 2.1363 1.9650 34 1 2.2721 3.7006 3.3259 35 1 1.2883 2.3371 3.9099 36 1 5.4685 0.6501 8.1156 37 1 3.8173 -1.1034 8.5895 38 1 1.7992 -1.3252 7.2026 39 1 1.4051 0.2031 5.3369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594008710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:21 Heat of formation + Delta-G solvation = 35.598993 kcal Electronic energy + Delta-G solvation = -20401.294670 eV Core-core repulsion = 17310.250157 eV Total energy + Delta-G solvation = -3091.044513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.81986 -38.71381 -38.59699 -36.27022 -34.40038 -32.79183 -31.54565 -31.07562 -30.18232 -27.94584 -25.23144 -24.40713 -23.82032 -23.68695 -21.28809 -21.14390 -18.54628 -18.27718 -17.99406 -17.12302 -16.74986 -16.60709 -16.41770 -15.46527 -15.44253 -15.06007 -14.74715 -14.46619 -14.32194 -14.03438 -13.71034 -13.34063 -13.27799 -13.13196 -12.83963 -12.74070 -12.57883 -12.41488 -12.19942 -12.05615 -12.02077 -11.75938 -11.55047 -11.38963 -10.95325 -10.43303 -9.98415 -9.62072 -8.98517 -8.05164 -6.13477 -0.40166 0.27429 0.96568 1.42696 1.45766 1.47009 1.56832 2.46259 2.62560 2.92932 3.20746 3.24226 3.56693 3.72574 4.04009 4.06205 4.14109 4.27626 4.30774 4.41401 4.49410 4.58385 4.62754 4.75036 4.76948 4.83478 4.97974 5.00793 5.12386 5.15326 5.30060 5.36806 5.40583 5.44291 5.71708 5.73787 5.77197 5.83824 6.18864 6.31686 6.63791 6.86164 6.99981 7.54415 9.00612 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.003602 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.977440 B = 7771.197293 C = 8246.323497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.220 3.780 4 H -0.009 1.009 5 C -0.498 4.498 6 H 0.056 0.944 7 C 0.011 3.989 8 N -0.922 5.922 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.280 1.280 13 N -0.682 5.682 14 C 0.077 3.923 15 C -0.038 4.038 16 C 0.144 3.856 17 N -0.327 5.327 18 O -0.121 6.121 19 C 0.050 3.950 20 C -0.138 4.138 21 C -0.048 4.048 22 C -0.145 4.145 23 C -0.044 4.044 24 C -0.214 4.214 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.258 0.742 31 H 0.341 0.659 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.156 0.844 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 -5.137 21.493 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.111 3.889 4 H 0.009 0.991 5 C -0.537 4.537 6 H 0.075 0.925 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.206 1.206 13 N -0.314 5.314 14 C -0.054 4.054 15 C -0.077 4.077 16 C -0.037 4.037 17 N -0.072 5.072 18 O -0.131 6.131 19 C -0.003 4.003 20 C -0.157 4.157 21 C -0.067 4.067 22 C -0.163 4.163 23 C -0.064 4.064 24 C -0.217 4.217 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.160 0.840 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.173 0.827 37 H 0.197 0.803 38 H 0.187 0.813 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.453 -3.601 20.867 21.225 hybrid contribution -0.259 -0.831 -0.907 1.257 sum -1.711 -4.431 19.959 20.517 Atomic orbital electron populations 1.21483 0.95408 0.99730 1.01226 1.21945 0.96929 0.99571 0.99388 1.18978 0.93394 0.89814 0.86683 0.99144 1.21328 1.30246 1.11378 0.90713 0.92545 1.25615 0.95987 0.95907 1.01143 1.70029 1.40058 1.25254 1.20957 0.85593 0.78128 0.78888 0.79547 1.19123 1.21413 1.20639 1.60602 1.04779 1.63069 1.02951 1.21638 0.96197 0.96773 0.90816 1.20239 0.95490 1.03050 0.88880 1.24905 0.93307 0.90786 0.94662 1.79871 1.08433 1.18470 1.00436 1.89068 1.42825 1.40668 1.40489 1.20931 0.91745 0.90711 0.96927 1.20499 1.03540 0.95350 0.96349 1.21687 0.91346 0.95003 0.98644 1.21317 0.99367 1.00451 0.95127 1.20870 0.97550 0.91059 0.96944 1.20955 0.99856 1.02248 0.98690 0.93906 0.93630 0.92518 0.95499 0.92263 0.93277 0.83984 0.95275 0.94051 0.88668 0.85919 0.82671 0.80288 0.81316 0.82984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 9.40 71.98 0.68 -4.05 16 2 C -0.14 -6.28 5.51 30.60 0.17 -6.11 16 3 C 0.22 10.80 2.33 44.17 0.10 10.90 16 4 H -0.01 -0.54 7.70 -2.39 -0.02 -0.55 16 5 C -0.50 -26.76 7.25 25.60 0.19 -26.58 16 6 H 0.06 3.05 7.81 -2.90 -0.02 3.03 16 7 C 0.01 0.63 5.28 84.65 0.45 1.07 16 8 N -0.92 -52.77 11.38 21.45 0.24 -52.53 16 9 Si 0.95 43.64 29.54 68.60 2.03 45.66 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 N -0.68 -27.07 6.21 -495.44 -3.08 -30.15 16 14 C 0.08 2.67 5.49 86.30 0.47 3.14 16 15 C -0.04 -1.04 6.12 29.85 0.18 -0.86 16 16 C 0.14 4.31 6.72 45.04 0.30 4.62 16 17 N -0.33 -11.46 12.81 -43.47 -0.56 -12.02 16 18 O -0.12 -4.04 12.06 29.93 0.36 -3.68 16 19 C 0.05 1.34 7.48 22.99 0.17 1.51 16 20 C -0.14 -2.46 10.07 22.35 0.23 -2.24 16 21 C -0.05 -0.56 10.02 22.30 0.22 -0.34 16 22 C -0.14 -1.81 9.97 22.02 0.22 -1.59 16 23 C -0.04 -0.81 10.05 22.24 0.22 -0.58 16 24 C -0.21 -5.52 6.33 -20.21 -0.13 -5.65 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 2.00 6.85 -2.39 -0.02 1.98 16 27 H 0.06 1.85 6.63 -2.39 -0.02 1.84 16 28 H 0.03 1.10 7.50 -2.39 -0.02 1.08 16 29 H 0.06 3.11 6.23 -2.38 -0.01 3.10 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.34 11.90 6.70 -89.69 -0.60 11.30 16 32 H 0.03 0.98 7.53 -2.39 -0.02 0.96 16 33 H 0.04 1.66 7.93 -2.39 -0.02 1.64 16 34 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 38 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -67.77 325.20 2.93 -64.84 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.45 Total: 14.60 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 3.48 Total: -26.74 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -3.39 Total: -94.69 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.36 Total: -3.68 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.77 2.93 -64.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.442 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds