Wall clock time and date at job start Mon Mar 30 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47056 * 2 1 4 4 N 1.46906 * 109.47053 * 120.00330 * 2 1 3 5 5 C 1.46903 * 110.99770 * 274.99984 * 4 2 1 6 6 C 1.50697 * 109.46926 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00219 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99879 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00034 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47383 * 89.99459 * 10 8 6 12 12 H 1.48499 * 109.47193 * 209.99732 * 10 8 6 13 13 H 1.48500 * 109.46673 * 329.99584 * 10 8 6 14 14 C 1.50701 * 109.46958 * 239.99942 * 2 1 3 15 15 C 1.38301 * 120.08760 * 280.00339 * 14 2 1 16 16 C 1.37938 * 120.37645 * 179.97438 * 15 14 2 17 17 C 1.39368 * 120.12835 * 359.97438 * 16 15 14 18 18 C 1.38901 * 118.94983 * 0.02739 * 17 16 15 19 19 C 1.37680 * 120.80128 * 359.73851 * 18 17 16 20 20 C 1.51136 * 106.34303 * 179.97438 * 18 17 16 21 21 C 1.51387 * 104.06841 * 359.97438 * 20 18 17 22 22 O 1.21286 * 126.44253 * 180.02562 * 21 20 18 23 23 N 1.34372 * 107.11385 * 359.97438 * 21 20 18 24 24 C 1.46503 * 123.87458 * 179.97438 * 23 21 20 25 25 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47006 * 299.99884 * 1 2 3 27 27 H 1.09002 * 109.47097 * 59.99865 * 1 2 3 28 28 H 1.00896 * 110.99789 * 151.04350 * 4 2 1 29 29 H 1.09005 * 109.46479 * 299.99747 * 5 4 2 30 30 H 1.08996 * 109.47267 * 59.99984 * 5 4 2 31 31 H 0.97000 * 120.00067 * 180.02562 * 9 8 6 32 32 H 1.07999 * 119.81313 * 359.97438 * 15 14 2 33 33 H 1.07998 * 119.93912 * 179.97438 * 16 15 14 34 34 H 1.08008 * 120.04154 * 180.26573 * 19 18 17 35 35 H 1.09001 * 110.50709 * 241.35275 * 20 18 17 36 36 H 1.08998 * 110.62741 * 118.70441 * 20 18 17 37 37 H 1.09000 * 109.46992 * 270.00468 * 24 23 21 38 38 H 1.08998 * 109.47361 * 30.00480 * 24 23 21 39 39 H 1.09005 * 109.47064 * 150.00095 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 1 2.8381 -1.5697 3.4793 8 6 2.7318 0.1351 4.7594 9 7 2.4274 1.4111 4.8526 10 14 3.3584 -0.7875 6.2581 11 1 4.8394 -0.6935 6.3138 12 1 2.7778 -0.1885 7.4866 13 1 2.9561 -2.2139 6.1650 14 6 2.0323 -0.7104 -1.2305 15 6 2.0674 -2.0925 -1.2673 16 6 2.5255 -2.7489 -2.3907 17 6 2.9566 -2.0218 -3.4988 18 6 2.9164 -0.6342 -3.4495 19 6 2.4542 0.0184 -2.3287 20 6 3.4405 -0.1460 -4.7804 21 6 3.7622 -1.4168 -5.5377 22 8 4.2125 -1.4914 -6.6614 23 7 3.4561 -2.4464 -4.7304 24 6 3.6254 -3.8535 -5.1017 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.9173 -1.1206 1.0287 29 1 2.7589 1.0461 2.1182 30 1 1.0871 0.6162 2.5526 31 1 2.5286 1.8733 5.6994 32 1 1.7343 -2.6611 -0.4117 33 1 2.5503 -3.8284 -2.4117 34 1 2.4244 1.0978 -2.3053 35 1 4.3405 0.4527 -4.6400 36 1 2.6782 0.4294 -5.3055 37 1 2.7128 -4.2168 -5.5743 38 1 4.4579 -3.9477 -5.7990 39 1 3.8314 -4.4428 -4.2082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819014330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:00 Heat of formation + Delta-G solvation = -1.262520 kcal Electronic energy + Delta-G solvation = -20305.556564 eV Core-core repulsion = 17212.913616 eV Total energy + Delta-G solvation = -3092.642948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.61845 -38.88097 -36.90397 -35.07514 -33.19194 -32.66658 -30.70076 -29.18960 -27.80040 -26.78387 -26.10567 -23.26628 -22.14484 -21.52648 -20.48581 -19.71841 -17.29468 -16.92950 -16.55445 -16.51982 -15.48219 -14.97301 -14.58492 -14.43762 -14.02988 -13.94136 -13.73218 -13.45278 -13.13760 -12.94957 -12.85211 -12.59234 -12.32873 -12.14047 -11.64315 -11.49146 -11.35512 -11.08008 -10.86079 -10.67554 -10.38901 -10.31065 -10.23873 -9.87579 -9.19610 -8.88087 -8.50712 -7.89222 -7.36718 -6.05387 -4.07292 1.11450 1.32108 2.28792 2.54791 3.30357 3.36709 3.40771 3.72804 3.95565 4.22211 4.41568 4.68108 4.84014 4.97363 5.02167 5.07061 5.13036 5.17739 5.27177 5.31041 5.34428 5.48494 5.59329 5.78886 5.91436 5.94534 6.01998 6.18767 6.29881 6.43625 6.44974 6.65665 6.67807 6.76155 7.01721 7.24191 7.39103 7.68327 7.76247 8.10428 8.35570 8.56863 9.01858 9.57761 11.05689 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031079 B = 0.003380 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.726364 B = 8283.174157 C = 8567.794495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.122 3.878 3 H 0.044 0.956 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.514 4.514 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.090 4.090 15 C -0.064 4.064 16 C -0.135 4.135 17 C 0.127 3.873 18 C -0.144 4.144 19 C -0.064 4.064 20 C -0.112 4.112 21 C 0.525 3.475 22 O -0.512 6.512 23 N -0.552 5.552 24 C 0.079 3.921 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.331 0.669 29 H -0.013 1.013 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -6.007 -17.770 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.011 3.989 3 H 0.062 0.938 4 N -0.314 5.314 5 C 0.068 3.932 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.726 3.274 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.092 4.092 15 C -0.083 4.083 16 C -0.156 4.156 17 C 0.032 3.968 18 C -0.147 4.147 19 C -0.083 4.083 20 C -0.151 4.151 21 C 0.315 3.685 22 O -0.388 6.388 23 N -0.275 5.275 24 C -0.063 4.063 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.148 0.852 29 H 0.004 0.996 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.691 -6.248 -18.182 19.238 hybrid contribution 1.124 0.028 0.699 1.324 sum 0.433 -6.221 -17.483 18.562 Atomic orbital electron populations 1.21747 0.94269 1.01997 1.00842 1.20403 0.95754 0.95241 0.87454 0.93770 1.60842 1.32541 1.34608 1.03362 1.19605 0.96588 0.90198 0.86846 1.21174 1.43316 0.96759 0.94026 0.91966 1.24980 0.95651 0.94902 0.99008 1.69956 1.48775 1.09026 1.25956 0.86498 0.78821 0.79994 0.82091 1.20753 1.21263 1.19763 1.20116 0.99472 0.93933 0.95650 1.20921 0.96279 0.94126 0.96934 1.20373 1.03880 0.99498 0.91877 1.18153 0.98693 0.93501 0.86423 1.19661 1.06035 0.92748 0.96278 1.20180 0.97259 0.99924 0.90913 1.21015 1.04012 0.96890 0.93161 1.20680 0.76569 0.86275 0.85022 1.90764 1.44664 1.86233 1.17149 1.45698 1.60102 1.07746 1.13974 1.21803 1.02777 0.79738 1.01992 0.92324 0.92026 0.93566 0.85225 0.99566 0.95193 0.92906 0.83900 0.85904 0.85469 0.86095 0.86133 0.91664 0.90020 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.39 37.16 0.35 -1.65 16 2 C 0.12 1.99 2.82 -68.86 -0.19 1.80 16 3 H 0.04 0.76 7.67 -51.93 -0.40 0.37 16 4 N -0.68 -13.59 5.68 -109.22 -0.62 -14.21 16 5 C 0.19 4.88 5.24 -4.98 -0.03 4.85 16 6 C -0.51 -14.16 9.32 -34.44 -0.32 -14.48 16 7 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 C -0.09 -1.24 4.72 -104.54 -0.49 -1.73 16 15 C -0.06 -0.82 8.99 -39.67 -0.36 -1.17 16 16 C -0.14 -1.53 9.74 -39.27 -0.38 -1.91 16 17 C 0.13 1.49 6.69 -83.69 -0.56 0.93 16 18 C -0.14 -1.66 6.35 -104.37 -0.66 -2.32 16 19 C -0.06 -0.78 9.66 -39.73 -0.38 -1.16 16 20 C -0.11 -1.09 6.88 -28.48 -0.20 -1.29 16 21 C 0.52 6.41 8.23 -10.83 -0.09 6.32 16 22 O -0.51 -7.66 17.67 5.55 0.10 -7.56 16 23 N -0.55 -6.17 3.13 -120.62 -0.38 -6.55 16 24 C 0.08 0.65 10.76 59.85 0.64 1.30 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.05 7.45 -51.93 -0.39 0.66 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.33 6.41 7.98 -39.29 -0.31 6.10 16 29 H -0.01 -0.36 8.06 -51.93 -0.42 -0.78 16 30 H 0.03 0.81 7.44 -51.93 -0.39 0.42 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 32 H 0.14 1.87 7.71 -52.49 -0.40 1.47 16 33 H 0.12 1.12 7.70 -52.49 -0.40 0.72 16 34 H 0.13 1.36 8.05 -52.48 -0.42 0.94 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.67 7.95 -51.93 -0.41 0.26 16 39 H 0.08 0.54 7.62 -51.93 -0.40 0.14 16 LS Contribution 329.34 15.07 4.96 4.96 Total: -1.00 -31.38 329.34 -8.59 -39.97 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.60 Total: 1.79 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -2.77 Total: -9.06 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.26 Total: -46.39 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.10 Total: -7.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.38 -8.59 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819014330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.708 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds