Wall clock time and date at job start Mon Mar 30 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47056 * 2 1 4 4 N 1.46906 * 109.47053 * 120.00330 * 2 1 3 5 5 C 1.46903 * 110.99770 * 274.99984 * 4 2 1 6 6 C 1.50697 * 109.46926 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00219 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99879 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00034 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47383 * 89.99459 * 10 8 6 12 12 H 1.48499 * 109.47193 * 209.99732 * 10 8 6 13 13 H 1.48500 * 109.46673 * 329.99584 * 10 8 6 14 14 C 1.50701 * 109.46958 * 239.99942 * 2 1 3 15 15 C 1.38301 * 120.08760 * 280.00339 * 14 2 1 16 16 C 1.37938 * 120.37645 * 179.97438 * 15 14 2 17 17 C 1.39368 * 120.12835 * 359.97438 * 16 15 14 18 18 C 1.38901 * 118.94983 * 0.02739 * 17 16 15 19 19 C 1.37680 * 120.80128 * 359.73851 * 18 17 16 20 20 C 1.51136 * 106.34303 * 179.97438 * 18 17 16 21 21 C 1.51387 * 104.06841 * 359.97438 * 20 18 17 22 22 O 1.21286 * 126.44253 * 180.02562 * 21 20 18 23 23 N 1.34372 * 107.11385 * 359.97438 * 21 20 18 24 24 C 1.46503 * 123.87458 * 179.97438 * 23 21 20 25 25 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47006 * 299.99884 * 1 2 3 27 27 H 1.09002 * 109.47097 * 59.99865 * 1 2 3 28 28 H 1.00896 * 110.99789 * 151.04350 * 4 2 1 29 29 H 1.09005 * 109.46479 * 299.99747 * 5 4 2 30 30 H 1.08996 * 109.47267 * 59.99984 * 5 4 2 31 31 H 0.97000 * 120.00067 * 180.02562 * 9 8 6 32 32 H 1.07999 * 119.81313 * 359.97438 * 15 14 2 33 33 H 1.07998 * 119.93912 * 179.97438 * 16 15 14 34 34 H 1.08008 * 120.04154 * 180.26573 * 19 18 17 35 35 H 1.09001 * 110.50709 * 241.35275 * 20 18 17 36 36 H 1.08998 * 110.62741 * 118.70441 * 20 18 17 37 37 H 1.09000 * 109.46992 * 270.00468 * 24 23 21 38 38 H 1.08998 * 109.47361 * 30.00480 * 24 23 21 39 39 H 1.09005 * 109.47064 * 150.00095 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 1 2.8381 -1.5697 3.4793 8 6 2.7318 0.1351 4.7594 9 7 2.4274 1.4111 4.8526 10 14 3.3584 -0.7875 6.2581 11 1 4.8394 -0.6935 6.3138 12 1 2.7778 -0.1885 7.4866 13 1 2.9561 -2.2139 6.1650 14 6 2.0323 -0.7104 -1.2305 15 6 2.0674 -2.0925 -1.2673 16 6 2.5255 -2.7489 -2.3907 17 6 2.9566 -2.0218 -3.4988 18 6 2.9164 -0.6342 -3.4495 19 6 2.4542 0.0184 -2.3287 20 6 3.4405 -0.1460 -4.7804 21 6 3.7622 -1.4168 -5.5377 22 8 4.2125 -1.4914 -6.6614 23 7 3.4561 -2.4464 -4.7304 24 6 3.6254 -3.8535 -5.1017 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.9173 -1.1206 1.0287 29 1 2.7589 1.0461 2.1182 30 1 1.0871 0.6162 2.5526 31 1 2.5286 1.8733 5.6994 32 1 1.7343 -2.6611 -0.4117 33 1 2.5503 -3.8284 -2.4117 34 1 2.4244 1.0978 -2.3053 35 1 4.3405 0.4527 -4.6400 36 1 2.6782 0.4294 -5.3055 37 1 2.7128 -4.2168 -5.5743 38 1 4.4579 -3.9477 -5.7990 39 1 3.8314 -4.4428 -4.2082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819014330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:00 Heat of formation + Delta-G solvation = -20.502212 kcal Electronic energy + Delta-G solvation = -20306.390860 eV Core-core repulsion = 17212.913616 eV Total energy + Delta-G solvation = -3093.477244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.51914 -39.92971 -38.10568 -36.38215 -34.74710 -33.90759 -32.10573 -30.34677 -28.80619 -28.00593 -27.53993 -24.67781 -23.30353 -22.96045 -21.41692 -20.92565 -18.65774 -18.14702 -17.75392 -17.38055 -16.99570 -16.42709 -16.23261 -15.33152 -15.22624 -14.95085 -14.70440 -14.60689 -14.33205 -14.18961 -13.97393 -13.81810 -13.45261 -13.30296 -13.12767 -12.98990 -12.80261 -12.59942 -12.38789 -12.12973 -11.87521 -11.60909 -11.36697 -11.20630 -11.13136 -10.62772 -9.79089 -9.08734 -8.85047 -8.19277 -6.29663 0.14717 0.40097 1.36454 1.43684 1.44819 1.56440 1.72487 2.42449 2.77386 3.07367 3.14551 3.34951 3.67132 3.81354 3.91607 4.08096 4.24274 4.34586 4.42603 4.48101 4.52240 4.56801 4.62180 4.72483 4.80632 4.92049 4.99123 5.05190 5.09657 5.20694 5.26216 5.40536 5.42161 5.53985 5.62677 5.73388 5.76042 6.07960 6.09007 6.50845 6.77358 6.78885 6.94054 7.41244 8.92155 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031079 B = 0.003380 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.726364 B = 8283.174157 C = 8567.794495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.123 3.877 3 H 0.033 0.967 4 N -0.676 5.676 5 C 0.210 3.790 6 C -0.533 4.533 7 H 0.066 0.934 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.970 3.030 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.263 1.263 14 C -0.103 4.103 15 C -0.070 4.070 16 C -0.128 4.128 17 C 0.123 3.877 18 C -0.143 4.143 19 C -0.064 4.064 20 C -0.106 4.106 21 C 0.518 3.482 22 O -0.546 6.546 23 N -0.553 5.553 24 C 0.070 3.930 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.335 0.665 29 H -0.041 1.041 30 H 0.004 0.996 31 H 0.264 0.736 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 -7.309 -18.420 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.013 3.987 3 H 0.051 0.949 4 N -0.307 5.307 5 C 0.082 3.918 6 C -0.571 4.571 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.795 3.205 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.188 1.188 14 C -0.105 4.105 15 C -0.089 4.089 16 C -0.148 4.148 17 C 0.027 3.973 18 C -0.146 4.146 19 C -0.083 4.083 20 C -0.145 4.145 21 C 0.310 3.690 22 O -0.424 6.424 23 N -0.275 5.275 24 C -0.070 4.070 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.152 0.848 29 H -0.024 1.024 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.334 -7.577 -18.842 20.311 hybrid contribution 0.995 0.415 0.812 1.350 sum 0.661 -7.161 -18.030 19.411 Atomic orbital electron populations 1.21701 0.93499 1.02228 1.00892 1.20395 0.96349 0.94666 0.87304 0.94942 1.60708 1.32694 1.33664 1.03659 1.19221 0.94085 0.89971 0.88473 1.21565 1.43345 0.97093 0.95108 0.91629 1.25918 0.95718 0.95734 1.02319 1.70086 1.49808 1.10690 1.26892 0.85371 0.78399 0.78877 0.77880 1.19877 1.20950 1.18762 1.19839 1.01268 0.94351 0.94996 1.20883 0.96852 0.93696 0.97451 1.20507 1.02699 1.00685 0.90949 1.18307 0.98489 0.93802 0.86652 1.19796 1.05341 0.92898 0.96583 1.20227 0.96881 1.00581 0.90567 1.21082 1.05256 0.96215 0.91924 1.21027 0.76029 0.87270 0.84718 1.90748 1.46349 1.86785 1.18561 1.45845 1.59327 1.08769 1.13528 1.22031 1.03389 0.78585 1.03018 0.91957 0.94509 0.90922 0.84792 1.02362 0.97820 0.92719 0.84457 0.83531 0.84233 0.84441 0.84028 0.90494 0.90203 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.39 71.98 0.68 -3.14 16 2 C 0.12 4.03 2.82 44.17 0.12 4.15 16 3 H 0.03 1.15 7.67 -2.39 -0.02 1.13 16 4 N -0.68 -27.35 5.68 -499.45 -2.84 -30.19 16 5 C 0.21 10.93 5.24 85.56 0.45 11.37 16 6 C -0.53 -29.71 9.32 25.60 0.24 -29.47 16 7 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 8 C 0.00 0.07 5.46 84.65 0.46 0.53 16 9 N -0.93 -55.84 13.29 21.44 0.28 -55.55 16 10 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 14 C -0.10 -2.72 4.72 -19.81 -0.09 -2.81 16 15 C -0.07 -1.69 8.99 22.21 0.20 -1.49 16 16 C -0.13 -2.57 9.74 22.47 0.22 -2.35 16 17 C 0.12 2.57 6.69 38.35 0.26 2.82 16 18 C -0.14 -2.96 6.35 -19.70 -0.13 -3.08 16 19 C -0.06 -1.43 9.66 22.17 0.21 -1.22 16 20 C -0.11 -1.82 6.88 29.46 0.20 -1.61 16 21 C 0.52 11.73 8.23 87.94 0.72 12.45 16 22 O -0.55 -15.74 17.67 -3.05 -0.05 -15.80 16 23 N -0.55 -11.13 3.13 -654.14 -2.05 -13.18 16 24 C 0.07 1.02 10.76 127.77 1.38 2.39 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.04 1.28 7.45 -2.38 -0.02 1.26 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.33 13.03 7.98 -89.70 -0.72 12.32 16 29 H -0.04 -2.33 8.06 -2.38 -0.02 -2.35 16 30 H 0.00 0.21 7.44 -2.39 -0.02 0.19 16 31 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.14 3.45 7.71 -2.91 -0.02 3.42 16 33 H 0.15 2.20 7.70 -2.91 -0.02 2.18 16 34 H 0.14 2.73 8.05 -2.91 -0.02 2.71 16 35 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.20 7.95 -2.39 -0.02 1.18 16 39 H 0.10 1.04 7.62 -2.38 -0.02 1.02 16 Total: -1.00 -67.89 329.34 2.63 -65.27 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.34 Total: 15.26 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.92 Total: -11.46 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -4.60 Total: -98.92 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.05 Total: -15.80 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -67.89 2.63 -65.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819014330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.765 kcal (2) G-P(sol) polarization free energy of solvation -67.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds