Wall clock time and date at job start Mon Mar 30 2020 01:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 H 1.08995 * 109.47322 * 174.06326 * 3 2 1 5 5 C 1.50707 * 109.47104 * 54.06183 * 3 2 1 6 6 H 1.08000 * 120.00081 * 239.99620 * 5 3 2 7 7 C 1.37877 * 119.99511 * 60.00088 * 5 3 2 8 8 N 1.31510 * 120.00583 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99574 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47275 * 119.99787 * 9 7 5 12 12 H 1.48496 * 109.47198 * 239.99683 * 9 7 5 13 13 N 1.46899 * 109.47289 * 294.06278 * 3 2 1 14 14 C 1.46896 * 111.00264 * 275.51551 * 13 3 2 15 15 C 1.52994 * 109.47508 * 176.73144 * 14 13 3 16 16 H 1.09006 * 109.47398 * 59.99602 * 15 14 13 17 17 O 1.42900 * 109.47160 * 300.00099 * 15 14 13 18 18 C 1.50706 * 109.47421 * 179.97438 * 15 14 13 19 19 C 1.38359 * 119.84268 * 84.72435 * 18 15 14 20 20 C 1.37948 * 120.15110 * 179.76886 * 19 18 15 21 21 C 1.39634 * 119.84063 * 0.48351 * 20 19 18 22 22 C 1.43210 * 120.14826 * 179.74694 * 21 20 19 23 23 N 9.76338 * 111.94812 * 70.27695 * 3 1 2 24 24 C 1.39629 * 119.70387 * 359.76714 * 21 20 19 25 25 C 1.37953 * 119.84316 * 0.02562 * 24 21 20 26 26 H 1.09002 * 109.46883 * 178.59569 * 1 2 3 27 27 H 1.09009 * 109.47124 * 58.60367 * 1 2 3 28 28 H 1.08994 * 109.46957 * 298.60391 * 1 2 3 29 29 H 1.09000 * 109.46968 * 120.00104 * 2 1 3 30 30 H 1.08999 * 109.47086 * 240.00485 * 2 1 3 31 31 H 0.96998 * 120.00473 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00060 * 39.47453 * 13 3 2 33 33 H 1.09006 * 109.46730 * 296.72954 * 14 13 3 34 34 H 1.08996 * 109.47238 * 56.72417 * 14 13 3 35 35 H 0.96703 * 113.99804 * 299.99751 * 17 15 14 36 36 H 1.08002 * 119.92839 * 359.97438 * 19 18 15 37 37 H 1.08000 * 120.08220 * 180.25691 * 20 19 18 38 38 H 1.07998 * 120.08049 * 179.97438 * 24 21 20 39 39 H 1.08002 * 119.92348 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1063 5 6 1.4212 2.1941 1.1504 6 1 0.8144 3.0672 0.9610 7 6 1.6299 1.7670 2.4447 8 7 2.3684 0.7035 2.6753 9 14 0.8635 2.6990 3.8706 10 1 0.0836 3.8496 3.3480 11 1 -0.0383 1.7930 4.6266 12 1 1.9352 3.1948 4.7710 13 7 1.6708 2.0924 -1.2646 14 6 2.6553 1.7987 -2.3145 15 6 2.1960 2.4231 -3.6336 16 1 2.1050 3.5026 -3.5124 17 8 0.9282 1.8769 -4.0031 18 6 3.2063 2.1223 -4.7106 19 6 3.1414 0.9247 -5.4004 20 6 4.0601 0.6448 -6.3907 21 6 5.0631 1.5692 -6.6893 22 6 6.0235 1.2831 -7.7124 23 7 6.7840 1.0540 -8.5245 24 6 5.1259 2.7736 -5.9856 25 6 4.1981 3.0423 -5.0006 26 1 -0.3633 -1.0274 -0.0252 27 1 -0.3634 0.5354 -0.8773 28 1 -0.3633 0.4920 0.9022 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.5148 0.4028 3.5858 32 1 0.7427 1.8213 -1.5531 33 1 3.6223 2.2154 -2.0326 34 1 2.7463 0.7193 -2.4357 35 1 0.9345 0.9180 -4.1283 36 1 2.3677 0.2087 -5.1654 37 1 4.0058 -0.2886 -6.9313 38 1 5.8994 3.4927 -6.2112 39 1 4.2457 3.9733 -4.4552 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846996345.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:38 Heat of formation + Delta-G solvation = -3.100767 kcal Electronic energy + Delta-G solvation = -20283.507234 eV Core-core repulsion = 17190.784574 eV Total energy + Delta-G solvation = -3092.722660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.08134 -37.81777 -36.54371 -35.82619 -32.69180 -31.95619 -31.34231 -30.57645 -27.80539 -25.95881 -23.69906 -23.11139 -23.06965 -21.40639 -19.34280 -19.21245 -17.26064 -16.35847 -16.19901 -15.28059 -14.96059 -14.84797 -14.54524 -14.29679 -14.02443 -13.77206 -13.70598 -13.16324 -13.03044 -12.87323 -12.63930 -12.40584 -12.20451 -11.96141 -11.67562 -11.36192 -11.03471 -10.94294 -10.80674 -10.53634 -10.24003 -10.01092 -9.75893 -9.57324 -9.32355 -9.06802 -8.88227 -8.36807 -7.26410 -5.99642 -4.00994 0.46972 1.05177 2.39658 2.66685 3.30441 3.39000 3.43952 3.57382 3.60833 4.35895 4.42499 4.48763 4.54081 4.57779 5.01799 5.12601 5.29501 5.32615 5.34882 5.46391 5.58647 5.69698 5.92171 5.98185 6.03883 6.14427 6.31350 6.33629 6.39699 6.50825 6.54681 6.85986 7.20713 7.23165 7.25524 7.48012 7.60923 7.67080 7.87047 8.25212 8.52857 8.59717 9.05336 9.63019 11.07546 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.003377 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.848002 B = 8289.401062 C = 8441.379782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.035 3.965 15 C 0.141 3.859 16 H 0.119 0.881 17 O -0.550 6.550 18 C -0.073 4.073 19 C -0.114 4.114 20 C -0.066 4.066 21 C -0.040 4.040 22 C 0.259 3.741 23 N -0.425 5.425 24 C -0.066 4.066 25 C -0.110 4.110 26 H 0.021 0.979 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.009 0.991 31 H 0.258 0.742 32 H 0.334 0.666 33 H 0.074 0.926 34 H 0.023 0.977 35 H 0.369 0.631 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 0.537 -14.912 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.527 4.527 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.313 5.313 14 C -0.095 4.095 15 C 0.082 3.918 16 H 0.137 0.863 17 O -0.355 6.355 18 C -0.075 4.075 19 C -0.132 4.132 20 C -0.086 4.086 21 C -0.043 4.043 22 C -0.056 4.056 23 N -0.100 5.100 24 C -0.087 4.087 25 C -0.128 4.128 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.217 0.783 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.750 1.314 -15.805 16.097 hybrid contribution -0.519 -1.123 0.951 1.560 sum 2.232 0.191 -14.855 15.023 Atomic orbital electron populations 1.21572 0.97562 0.97993 1.01434 1.22099 0.95125 1.01124 1.00074 1.19211 0.95990 0.88656 0.85388 0.95070 1.21099 1.30367 1.11518 0.89681 0.91925 1.24912 0.95570 0.95178 0.98739 1.69886 1.39357 1.24174 1.20228 0.86523 0.79023 0.79945 0.82435 1.19711 1.21251 1.21218 1.60806 1.04222 1.63213 1.03038 1.22537 0.98268 0.97288 0.91425 1.21137 0.80854 1.00100 0.89734 0.86318 1.86666 1.31037 1.26295 1.91467 1.21024 0.96307 0.93870 0.96315 1.20845 0.99343 0.96893 0.96169 1.21112 0.92745 0.98199 0.96568 1.15997 0.95081 0.97264 0.95983 1.25763 0.93189 0.93603 0.93085 1.81250 1.10146 1.07896 1.10702 1.21170 0.98371 0.94854 0.94299 1.21003 0.94296 1.00068 0.97410 0.95949 0.94943 0.91537 0.89009 0.97262 0.93181 0.84612 0.90722 0.95880 0.78331 0.85054 0.84987 0.84892 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.39 37.16 0.35 -2.27 16 2 C -0.14 -3.21 5.50 -26.73 -0.15 -3.36 16 3 C 0.22 5.04 2.33 -68.86 -0.16 4.88 16 4 H 0.03 0.82 7.85 -51.93 -0.41 0.41 16 5 C -0.49 -12.77 7.35 -34.44 -0.25 -13.02 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.50 5.22 -17.82 -0.09 1.41 16 8 N -0.90 -24.68 11.39 55.43 0.63 -24.05 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -13.23 6.25 -107.96 -0.67 -13.91 16 14 C 0.04 0.54 5.17 -3.83 -0.02 0.52 16 15 C 0.14 1.69 3.47 -27.88 -0.10 1.60 16 16 H 0.12 1.48 8.05 -51.93 -0.42 1.06 16 17 O -0.55 -6.72 12.42 -35.23 -0.44 -7.15 16 18 C -0.07 -0.72 5.01 -104.53 -0.52 -1.25 16 19 C -0.11 -0.99 9.31 -39.64 -0.37 -1.36 16 20 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 21 C -0.04 -0.35 5.73 -106.93 -0.61 -0.97 16 22 C 0.26 2.71 15.33 -22.47 -0.34 2.37 16 23 N -0.42 -5.40 18.54 41.84 0.78 -4.62 16 24 C -0.07 -0.54 9.76 -39.17 -0.38 -0.93 16 25 C -0.11 -0.96 9.66 -39.64 -0.38 -1.35 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.60 6.43 -51.92 -0.33 0.26 16 28 H 0.07 1.51 7.04 -51.93 -0.37 1.14 16 29 H 0.09 2.33 6.25 -51.93 -0.32 2.00 16 30 H 0.01 0.18 7.26 -51.93 -0.38 -0.20 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.33 6.35 5.91 -39.29 -0.23 6.12 16 33 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 34 H 0.02 0.35 7.26 -51.93 -0.38 -0.02 16 35 H 0.37 3.37 7.38 45.56 0.34 3.71 16 36 H 0.13 0.91 6.61 -52.49 -0.35 0.56 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -29.38 329.04 -7.69 -37.07 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.50 Total: 6.47 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -3.42 Total: -14.63 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.73 Total: -42.57 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.44 Total: -7.15 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.38 -7.69 -37.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996345.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.970 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds