Wall clock time and date at job start Mon Mar 30 2020 01:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 H 1.08995 * 109.47322 * 174.06326 * 3 2 1 5 5 C 1.50707 * 109.47104 * 54.06183 * 3 2 1 6 6 H 1.08000 * 120.00081 * 239.99620 * 5 3 2 7 7 C 1.37877 * 119.99511 * 60.00088 * 5 3 2 8 8 N 1.31510 * 120.00583 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99574 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47275 * 119.99787 * 9 7 5 12 12 H 1.48496 * 109.47198 * 239.99683 * 9 7 5 13 13 N 1.46899 * 109.47289 * 294.06278 * 3 2 1 14 14 C 1.46896 * 111.00264 * 275.51551 * 13 3 2 15 15 C 1.52994 * 109.47508 * 176.73144 * 14 13 3 16 16 H 1.09006 * 109.47398 * 59.99602 * 15 14 13 17 17 O 1.42900 * 109.47160 * 300.00099 * 15 14 13 18 18 C 1.50706 * 109.47421 * 179.97438 * 15 14 13 19 19 C 1.38359 * 119.84268 * 84.72435 * 18 15 14 20 20 C 1.37948 * 120.15110 * 179.76886 * 19 18 15 21 21 C 1.39634 * 119.84063 * 0.48351 * 20 19 18 22 22 C 1.43210 * 120.14826 * 179.74694 * 21 20 19 23 23 N 9.76338 * 111.94812 * 70.27695 * 3 1 2 24 24 C 1.39629 * 119.70387 * 359.76714 * 21 20 19 25 25 C 1.37953 * 119.84316 * 0.02562 * 24 21 20 26 26 H 1.09002 * 109.46883 * 178.59569 * 1 2 3 27 27 H 1.09009 * 109.47124 * 58.60367 * 1 2 3 28 28 H 1.08994 * 109.46957 * 298.60391 * 1 2 3 29 29 H 1.09000 * 109.46968 * 120.00104 * 2 1 3 30 30 H 1.08999 * 109.47086 * 240.00485 * 2 1 3 31 31 H 0.96998 * 120.00473 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00060 * 39.47453 * 13 3 2 33 33 H 1.09006 * 109.46730 * 296.72954 * 14 13 3 34 34 H 1.08996 * 109.47238 * 56.72417 * 14 13 3 35 35 H 0.96703 * 113.99804 * 299.99751 * 17 15 14 36 36 H 1.08002 * 119.92839 * 359.97438 * 19 18 15 37 37 H 1.08000 * 120.08220 * 180.25691 * 20 19 18 38 38 H 1.07998 * 120.08049 * 179.97438 * 24 21 20 39 39 H 1.08002 * 119.92348 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1063 5 6 1.4212 2.1941 1.1504 6 1 0.8144 3.0672 0.9610 7 6 1.6299 1.7670 2.4447 8 7 2.3684 0.7035 2.6753 9 14 0.8635 2.6990 3.8706 10 1 0.0836 3.8496 3.3480 11 1 -0.0383 1.7930 4.6266 12 1 1.9352 3.1948 4.7710 13 7 1.6708 2.0924 -1.2646 14 6 2.6553 1.7987 -2.3145 15 6 2.1960 2.4231 -3.6336 16 1 2.1050 3.5026 -3.5124 17 8 0.9282 1.8769 -4.0031 18 6 3.2063 2.1223 -4.7106 19 6 3.1414 0.9247 -5.4004 20 6 4.0601 0.6448 -6.3907 21 6 5.0631 1.5692 -6.6893 22 6 6.0235 1.2831 -7.7124 23 7 6.7840 1.0540 -8.5245 24 6 5.1259 2.7736 -5.9856 25 6 4.1981 3.0423 -5.0006 26 1 -0.3633 -1.0274 -0.0252 27 1 -0.3634 0.5354 -0.8773 28 1 -0.3633 0.4920 0.9022 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.5148 0.4028 3.5858 32 1 0.7427 1.8213 -1.5531 33 1 3.6223 2.2154 -2.0326 34 1 2.7463 0.7193 -2.4357 35 1 0.9345 0.9180 -4.1283 36 1 2.3677 0.2087 -5.1654 37 1 4.0058 -0.2886 -6.9313 38 1 5.8994 3.4927 -6.2112 39 1 4.2457 3.9733 -4.4552 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846996345.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:38 Heat of formation + Delta-G solvation = -22.107643 kcal Electronic energy + Delta-G solvation = -20284.331434 eV Core-core repulsion = 17190.784574 eV Total energy + Delta-G solvation = -3093.546860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84277 -38.91487 -37.71786 -37.04575 -34.32618 -33.06406 -32.08802 -31.99338 -29.17717 -27.56501 -25.24763 -24.43006 -23.75527 -22.39470 -21.13222 -19.91548 -18.32650 -18.01888 -17.08749 -16.84270 -16.33280 -15.90016 -15.55332 -15.19740 -15.09434 -15.05105 -14.60205 -14.40578 -14.34030 -14.09096 -13.85055 -13.70556 -13.34589 -13.07525 -13.03538 -12.80481 -12.57987 -12.40077 -12.12316 -11.93970 -11.87097 -11.68768 -11.37775 -11.09746 -10.79909 -10.39907 -9.95701 -9.74170 -8.84772 -8.02360 -6.09884 -0.25874 0.41807 1.43593 1.47299 1.57785 1.57840 1.88392 2.48649 2.82596 2.86356 3.27059 3.45676 3.57637 3.89016 3.97594 4.10722 4.21444 4.35625 4.42386 4.54077 4.60397 4.66794 4.75933 4.78502 4.91155 4.98463 5.11104 5.17204 5.22899 5.32739 5.42323 5.49129 5.60247 5.74371 5.80190 5.84219 5.89672 6.37375 6.40528 6.73548 6.81430 6.95497 7.06399 7.58299 9.03000 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.003377 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.848002 B = 8289.401062 C = 8441.379782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.138 4.138 3 C 0.221 3.779 4 H -0.003 1.003 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.686 5.686 14 C 0.038 3.962 15 C 0.157 3.843 16 H 0.113 0.887 17 O -0.560 6.560 18 C -0.083 4.083 19 C -0.116 4.116 20 C -0.062 4.062 21 C -0.047 4.047 22 C 0.281 3.719 23 N -0.468 5.468 24 C -0.063 4.063 25 C -0.114 4.114 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.258 0.742 32 H 0.338 0.662 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.383 0.617 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 0.564 -15.949 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 C 0.113 3.887 4 H 0.015 0.985 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.318 5.318 14 C -0.092 4.092 15 C 0.098 3.902 16 H 0.131 0.869 17 O -0.367 6.367 18 C -0.085 4.085 19 C -0.134 4.134 20 C -0.082 4.082 21 C -0.050 4.050 22 C -0.033 4.033 23 N -0.144 5.144 24 C -0.083 4.083 25 C -0.132 4.132 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.158 0.842 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.233 0.767 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.002 1.338 -16.861 17.032 hybrid contribution -0.278 -1.131 1.236 1.698 sum 1.725 0.207 -15.625 15.721 Atomic orbital electron populations 1.21456 0.95994 0.99296 1.00918 1.21938 0.96434 0.99972 0.99385 1.18937 0.93588 0.89503 0.86716 0.98512 1.21341 1.30045 1.11289 0.90964 0.93040 1.25557 0.96067 0.95914 1.00911 1.70010 1.40395 1.25273 1.20486 0.85660 0.78222 0.78907 0.79765 1.19360 1.20925 1.21186 1.60630 1.05302 1.63005 1.02909 1.22573 0.96870 0.97842 0.91956 1.20819 0.81390 0.99421 0.88606 0.86908 1.86639 1.31063 1.27722 1.91300 1.20877 0.96308 0.94960 0.96366 1.21054 0.99789 0.96725 0.95848 1.21318 0.91984 0.98677 0.96237 1.16113 0.95110 0.97936 0.95850 1.25924 0.92511 0.92368 0.92489 1.81275 1.11565 1.09348 1.12163 1.21347 0.98462 0.94886 0.93611 1.21167 0.94026 1.00437 0.97582 0.93862 0.92970 0.94304 0.92370 0.95168 0.93322 0.84166 0.91683 0.95416 0.76711 0.83256 0.83099 0.83144 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.70 9.39 71.98 0.68 -4.03 16 2 C -0.14 -6.05 5.50 30.59 0.17 -5.88 16 3 C 0.22 10.43 2.33 44.17 0.10 10.53 16 4 H 0.00 -0.16 7.85 -2.39 -0.02 -0.18 16 5 C -0.50 -26.29 7.35 25.60 0.19 -26.10 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.72 5.22 84.66 0.44 1.17 16 8 N -0.92 -51.50 11.39 21.45 0.24 -51.25 16 9 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.69 -26.22 6.25 -495.47 -3.10 -29.32 16 14 C 0.04 1.11 5.17 86.30 0.45 1.56 16 15 C 0.16 3.50 3.47 29.85 0.10 3.60 16 16 H 0.11 2.65 8.05 -2.38 -0.02 2.63 16 17 O -0.56 -12.35 12.42 -148.98 -1.85 -14.20 16 18 C -0.08 -1.47 5.01 -19.81 -0.10 -1.57 16 19 C -0.12 -1.69 9.31 22.23 0.21 -1.48 16 20 C -0.06 -0.84 9.76 22.54 0.22 -0.62 16 21 C -0.05 -0.73 5.73 -21.36 -0.12 -0.85 16 22 C 0.28 5.48 15.33 88.34 1.35 6.84 16 23 N -0.47 -11.50 18.54 19.01 0.35 -11.15 16 24 C -0.06 -0.89 9.76 22.54 0.22 -0.67 16 25 C -0.11 -1.77 9.66 22.23 0.21 -1.56 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.82 6.43 -2.38 -0.02 1.81 16 28 H 0.04 1.73 7.04 -2.39 -0.02 1.71 16 29 H 0.06 2.97 6.25 -2.39 -0.01 2.96 16 30 H 0.03 1.17 7.26 -2.39 -0.02 1.15 16 31 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.34 12.37 5.91 -89.69 -0.53 11.84 16 33 H 0.06 2.04 8.12 -2.38 -0.02 2.02 16 34 H 0.03 0.80 7.26 -2.39 -0.02 0.78 16 35 H 0.38 5.87 7.38 -74.06 -0.55 5.32 16 36 H 0.15 1.56 6.61 -2.91 -0.02 1.55 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -63.34 329.04 1.80 -61.54 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.00 Total: 18.37 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 4.12 Total: -19.06 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -2.50 Total: -91.72 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.85 Total: -14.20 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -63.34 1.80 -61.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996345.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.432 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds