Wall clock time and date at job start Mon Mar 30 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.60514 * 2 1 4 4 C 1.52926 * 109.68859 * 239.60188 * 2 1 3 5 5 N 1.46968 * 108.87347 * 190.96574 * 4 2 1 6 6 C 1.34767 * 120.59540 * 235.21221 * 5 4 2 7 7 O 1.21507 * 120.00179 * 179.71930 * 6 5 4 8 8 O 1.34639 * 120.00162 * 359.71513 * 6 5 4 9 9 C 1.45194 * 117.00468 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47656 * 180.02562 * 9 8 6 11 11 F 1.39904 * 109.47174 * 64.99783 * 10 9 8 12 12 C 1.46965 * 118.80715 * 54.93214 * 5 4 2 13 13 C 1.53370 * 108.63821 * 305.02757 * 12 5 4 14 14 H 1.08996 * 109.61103 * 289.68363 * 13 12 5 15 15 C 1.52996 * 109.60974 * 169.17005 * 13 12 5 16 16 N 1.46965 * 109.60693 * 120.33865 * 2 1 3 17 17 C 1.36937 * 120.59655 * 354.95604 * 16 2 1 18 18 H 1.07999 * 120.00220 * 126.60586 * 17 16 2 19 19 C 1.38815 * 119.99548 * 306.60279 * 17 16 2 20 20 N 1.31617 * 119.99987 * 335.54299 * 19 17 16 21 21 Si 1.86795 * 119.99669 * 155.54693 * 19 17 16 22 22 H 1.48499 * 109.47618 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47478 * 120.00052 * 21 19 17 24 24 H 1.48505 * 109.46957 * 239.99833 * 21 19 17 25 25 H 1.08995 * 109.47576 * 307.58677 * 1 2 3 26 26 H 1.09001 * 109.47483 * 67.59040 * 1 2 3 27 27 H 1.09001 * 109.47043 * 187.58158 * 1 2 3 28 28 H 1.09005 * 109.52532 * 71.12874 * 4 2 1 29 29 H 1.09000 * 109.45877 * 310.76446 * 4 2 1 30 30 H 1.08999 * 109.47031 * 59.99737 * 9 8 6 31 31 H 1.09003 * 109.47117 * 300.00680 * 9 8 6 32 32 H 1.09007 * 109.47434 * 185.00079 * 10 9 8 33 33 H 1.09000 * 109.47235 * 305.00298 * 10 9 8 34 34 H 1.08997 * 109.60880 * 64.77492 * 12 5 4 35 35 H 1.09003 * 109.60806 * 185.11127 * 12 5 4 36 36 H 1.09001 * 109.47055 * 60.00141 * 15 13 12 37 37 H 1.08999 * 109.47300 * 180.02562 * 15 13 12 38 38 H 1.09005 * 109.47232 * 299.99696 * 15 13 12 39 39 H 0.97000 * 119.99664 * 185.06737 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0267 0.0000 4 6 2.0453 -0.7286 -1.2419 5 7 3.4909 -0.9505 -1.0974 6 6 4.3493 -0.5155 -2.0409 7 8 5.5429 -0.7003 -1.9080 8 8 3.8844 0.1238 -3.1308 9 6 4.8661 0.5638 -4.1058 10 6 4.1551 1.2649 -5.2650 11 9 3.5459 2.4350 -4.7991 12 6 3.9840 -1.6498 0.0974 13 6 3.4693 -0.9163 1.3421 14 1 3.9756 0.0444 1.4361 15 6 3.7370 -1.7657 2.5861 16 7 2.0232 -0.6993 1.1948 17 6 1.1510 -1.1405 2.1539 18 1 1.1723 -2.1732 2.4693 19 6 0.2395 -0.2603 2.7208 20 7 0.4908 1.0316 2.7304 21 14 -1.3437 -0.9095 3.4700 22 1 -1.3871 -2.3875 3.3321 23 1 -1.3968 -0.5445 4.9084 24 1 -2.5062 -0.3127 2.7646 25 1 -0.3634 0.6268 0.8143 26 1 -0.3634 0.3918 -0.9500 27 1 -0.3633 -1.0187 0.1356 28 1 1.8551 -0.1203 -2.1263 29 1 1.5358 -1.6874 -1.3379 30 1 5.4145 -0.2989 -4.4840 31 1 5.5615 1.2577 -3.6336 32 1 4.8813 1.5163 -6.0381 33 1 3.3968 0.6014 -5.6807 34 1 3.6158 -2.6757 0.0989 35 1 5.0741 -1.6524 0.0959 36 1 4.8088 -1.9379 2.6847 37 1 3.3700 -1.2426 3.4691 38 1 3.2225 -2.7219 2.4908 39 1 -0.1093 1.6390 3.1906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867598827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:27 Heat of formation + Delta-G solvation = -100.781954 kcal Electronic energy + Delta-G solvation = -22672.065172 eV Core-core repulsion = 19144.337512 eV Total energy + Delta-G solvation = -3527.727659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.71313 -40.26039 -38.00770 -36.16371 -34.24767 -32.97879 -31.34997 -30.78209 -27.76699 -26.29965 -25.70358 -23.96599 -22.91951 -20.75668 -20.36132 -19.31865 -17.78023 -16.99170 -16.83500 -16.07436 -15.73462 -15.46828 -15.19395 -14.83200 -14.47737 -14.33631 -13.73148 -13.51479 -13.05857 -12.87211 -12.44247 -12.06855 -11.63294 -11.54994 -11.52834 -11.32638 -11.14093 -11.05368 -10.77553 -10.60603 -10.51606 -10.48775 -10.40082 -10.16706 -9.99720 -9.89870 -9.63303 -8.45453 -8.06111 -6.38916 -5.81983 -3.55681 2.36873 3.14233 3.27647 3.38609 3.41138 4.05230 4.38238 4.42779 4.59532 4.75604 4.95287 5.14769 5.23702 5.30539 5.61600 5.71847 5.81152 5.84786 6.06368 6.08817 6.20034 6.32821 6.40924 6.43609 6.53935 6.62628 6.71577 6.83609 6.91888 7.09454 7.24494 7.38389 7.59104 7.80668 7.86859 8.57647 8.60552 9.13270 9.67663 10.46116 11.11245 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.005444 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.468362 B = 5142.345474 C = 5927.753378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.180 3.820 3 H 0.032 0.968 4 C 0.093 3.907 5 N -0.577 5.577 6 C 0.646 3.354 7 O -0.589 6.589 8 O -0.365 6.365 9 C 0.052 3.948 10 C 0.067 3.933 11 F -0.210 7.210 12 C 0.114 3.886 13 C 0.154 3.846 14 H 0.030 0.970 15 C -0.126 4.126 16 N -0.576 5.576 17 C -0.273 4.273 18 H 0.055 0.945 19 C 0.043 3.957 20 N -0.872 5.872 21 Si 0.881 3.119 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.284 1.284 25 H 0.089 0.911 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -2.242 -12.153 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.073 3.927 3 H 0.050 0.950 4 C -0.031 4.031 5 N -0.314 5.314 6 C 0.400 3.600 7 O -0.480 6.480 8 O -0.279 6.279 9 C -0.024 4.024 10 C 0.013 3.987 11 F -0.191 7.191 12 C -0.008 4.008 13 C 0.048 3.952 14 H 0.048 0.952 15 C -0.183 4.183 16 N -0.301 5.301 17 C -0.402 4.402 18 H 0.072 0.928 19 C -0.160 4.160 20 N -0.510 5.510 21 Si 0.709 3.291 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.210 1.210 25 H 0.107 0.893 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.195 -2.082 -12.133 13.361 hybrid contribution -0.794 -0.075 0.384 0.885 sum 4.401 -2.157 -11.749 12.730 Atomic orbital electron populations 1.21970 0.94872 1.02697 1.00465 1.20535 0.93900 0.93683 0.84544 0.95013 1.22550 0.78334 1.01194 1.00976 1.46942 1.07170 1.57815 1.19521 1.18014 0.84297 0.77636 0.80004 1.90926 1.14565 1.63025 1.79480 1.86260 1.40001 1.70676 1.31000 1.23528 0.90669 0.99944 0.88225 1.22089 0.98170 0.83525 0.94960 1.92824 1.85311 1.50488 1.90476 1.22435 0.99436 0.95304 0.83647 1.20901 0.87505 0.95604 0.91231 0.95245 1.21626 0.98206 1.00052 0.98465 1.43980 0.99338 1.67760 1.18985 1.18636 1.12037 0.92560 1.17010 0.92767 1.25556 0.99829 0.95223 0.95412 1.70120 1.36305 1.02547 1.42067 0.86614 0.84501 0.79353 0.78623 1.19661 1.21465 1.20993 0.89265 0.95533 0.92752 0.90434 0.91627 0.89643 0.90156 0.88498 0.89633 0.91533 0.89879 0.94388 0.91273 0.92772 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 7.83 37.16 0.29 -2.79 16 2 C 0.18 4.02 3.29 -67.71 -0.22 3.80 16 3 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.09 1.77 5.89 -3.82 -0.02 1.75 16 5 N -0.58 -11.14 2.95 -178.55 -0.53 -11.67 16 6 C 0.65 12.30 8.43 54.05 0.46 12.76 16 7 O -0.59 -12.13 15.54 -19.28 -0.30 -12.43 16 8 O -0.37 -6.00 8.85 -40.32 -0.36 -6.36 16 9 C 0.05 0.62 5.93 37.15 0.22 0.85 16 10 C 0.07 0.61 7.93 37.15 0.29 0.90 16 11 F -0.21 -2.76 17.35 2.25 0.04 -2.73 16 12 C 0.11 2.17 5.91 -3.60 -0.02 2.15 16 13 C 0.15 3.30 3.65 -67.49 -0.25 3.05 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.13 -2.41 8.18 37.16 0.30 -2.10 16 16 N -0.58 -13.65 2.75 -157.29 -0.43 -14.08 16 17 C -0.27 -6.90 6.63 -15.06 -0.10 -7.00 16 18 H 0.05 1.39 7.18 -52.49 -0.38 1.02 16 19 C 0.04 1.11 3.08 -17.43 -0.05 1.05 16 20 N -0.87 -23.95 12.03 55.49 0.67 -23.29 16 21 Si 0.88 20.15 29.62 -169.99 -5.04 15.12 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.09 2.19 5.03 -51.93 -0.26 1.93 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 1.17 7.56 -51.93 -0.39 0.78 16 28 H 0.08 1.37 6.91 -51.93 -0.36 1.01 16 29 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 35 H 0.08 1.54 6.99 -51.93 -0.36 1.18 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.47 7.75 -51.93 -0.40 1.07 16 38 H 0.05 1.02 7.43 -51.93 -0.39 0.63 16 39 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -30.27 315.70 -6.19 -36.46 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.90 Total: -0.19 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 0.90 Total: 14.42 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.29 Total: -49.04 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.66 Total: -18.79 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.04 Total: 15.12 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.27 -6.19 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867598827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.327 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds