Wall clock time and date at job start Mon Mar 30 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.60514 * 2 1 4 4 C 1.52926 * 109.68859 * 239.60188 * 2 1 3 5 5 N 1.46968 * 108.87347 * 190.96574 * 4 2 1 6 6 C 1.34767 * 120.59540 * 235.21221 * 5 4 2 7 7 O 1.21507 * 120.00179 * 179.71930 * 6 5 4 8 8 O 1.34639 * 120.00162 * 359.71513 * 6 5 4 9 9 C 1.45194 * 117.00468 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47656 * 180.02562 * 9 8 6 11 11 F 1.39904 * 109.47174 * 64.99783 * 10 9 8 12 12 C 1.46965 * 118.80715 * 54.93214 * 5 4 2 13 13 C 1.53370 * 108.63821 * 305.02757 * 12 5 4 14 14 H 1.08996 * 109.61103 * 289.68363 * 13 12 5 15 15 C 1.52996 * 109.60974 * 169.17005 * 13 12 5 16 16 N 1.46965 * 109.60693 * 120.33865 * 2 1 3 17 17 C 1.36937 * 120.59655 * 354.95604 * 16 2 1 18 18 H 1.07999 * 120.00220 * 126.60586 * 17 16 2 19 19 C 1.38815 * 119.99548 * 306.60279 * 17 16 2 20 20 N 1.31617 * 119.99987 * 335.54299 * 19 17 16 21 21 Si 1.86795 * 119.99669 * 155.54693 * 19 17 16 22 22 H 1.48499 * 109.47618 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47478 * 120.00052 * 21 19 17 24 24 H 1.48505 * 109.46957 * 239.99833 * 21 19 17 25 25 H 1.08995 * 109.47576 * 307.58677 * 1 2 3 26 26 H 1.09001 * 109.47483 * 67.59040 * 1 2 3 27 27 H 1.09001 * 109.47043 * 187.58158 * 1 2 3 28 28 H 1.09005 * 109.52532 * 71.12874 * 4 2 1 29 29 H 1.09000 * 109.45877 * 310.76446 * 4 2 1 30 30 H 1.08999 * 109.47031 * 59.99737 * 9 8 6 31 31 H 1.09003 * 109.47117 * 300.00680 * 9 8 6 32 32 H 1.09007 * 109.47434 * 185.00079 * 10 9 8 33 33 H 1.09000 * 109.47235 * 305.00298 * 10 9 8 34 34 H 1.08997 * 109.60880 * 64.77492 * 12 5 4 35 35 H 1.09003 * 109.60806 * 185.11127 * 12 5 4 36 36 H 1.09001 * 109.47055 * 60.00141 * 15 13 12 37 37 H 1.08999 * 109.47300 * 180.02562 * 15 13 12 38 38 H 1.09005 * 109.47232 * 299.99696 * 15 13 12 39 39 H 0.97000 * 119.99664 * 185.06737 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0267 0.0000 4 6 2.0453 -0.7286 -1.2419 5 7 3.4909 -0.9505 -1.0974 6 6 4.3493 -0.5155 -2.0409 7 8 5.5429 -0.7003 -1.9080 8 8 3.8844 0.1238 -3.1308 9 6 4.8661 0.5638 -4.1058 10 6 4.1551 1.2649 -5.2650 11 9 3.5459 2.4350 -4.7991 12 6 3.9840 -1.6498 0.0974 13 6 3.4693 -0.9163 1.3421 14 1 3.9756 0.0444 1.4361 15 6 3.7370 -1.7657 2.5861 16 7 2.0232 -0.6993 1.1948 17 6 1.1510 -1.1405 2.1539 18 1 1.1723 -2.1732 2.4693 19 6 0.2395 -0.2603 2.7208 20 7 0.4908 1.0316 2.7304 21 14 -1.3437 -0.9095 3.4700 22 1 -1.3871 -2.3875 3.3321 23 1 -1.3968 -0.5445 4.9084 24 1 -2.5062 -0.3127 2.7646 25 1 -0.3634 0.6268 0.8143 26 1 -0.3634 0.3918 -0.9500 27 1 -0.3633 -1.0187 0.1356 28 1 1.8551 -0.1203 -2.1263 29 1 1.5358 -1.6874 -1.3379 30 1 5.4145 -0.2989 -4.4840 31 1 5.5615 1.2577 -3.6336 32 1 4.8813 1.5163 -6.0381 33 1 3.3968 0.6014 -5.6807 34 1 3.6158 -2.6757 0.0989 35 1 5.0741 -1.6524 0.0959 36 1 4.8088 -1.9379 2.6847 37 1 3.3700 -1.2426 3.4691 38 1 3.2225 -2.7219 2.4908 39 1 -0.1093 1.6390 3.1906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867598827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:26 Heat of formation + Delta-G solvation = -119.395069 kcal Electronic energy + Delta-G solvation = -22672.872297 eV Core-core repulsion = 19144.337512 eV Total energy + Delta-G solvation = -3528.534785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.59697 -41.69732 -39.59526 -37.59498 -35.93473 -34.65312 -33.17836 -31.76384 -29.54476 -27.83569 -27.40008 -25.63782 -23.95027 -22.23560 -22.05173 -21.00557 -19.28155 -18.32377 -18.05888 -17.72411 -16.88156 -16.67371 -16.63803 -16.28085 -16.08528 -15.76159 -15.43771 -14.87100 -14.81876 -14.20962 -13.82138 -13.66247 -13.36878 -13.28043 -12.98811 -12.75884 -12.53045 -12.37437 -12.30624 -12.19943 -12.15983 -12.01434 -11.82091 -11.73346 -11.66506 -11.62590 -11.34299 -10.25825 -9.79847 -8.34132 -7.74784 -5.55621 1.06773 1.44953 1.51905 1.59913 1.67459 2.48956 2.79110 3.21842 3.49443 3.55748 3.82540 4.04942 4.09018 4.15800 4.28065 4.29792 4.40168 4.46916 4.52876 4.60503 4.72320 4.81282 4.84551 4.88692 4.96481 4.98394 5.15766 5.21736 5.33878 5.39832 5.59552 5.62223 5.75406 5.88127 6.32137 6.59630 7.14845 7.22510 7.77564 8.53244 9.14188 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.005444 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.468362 B = 5142.345474 C = 5927.753378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.178 3.822 3 H -0.007 1.007 4 C 0.109 3.891 5 N -0.585 5.585 6 C 0.647 3.353 7 O -0.608 6.608 8 O -0.371 6.371 9 C 0.041 3.959 10 C 0.067 3.933 11 F -0.235 7.235 12 C 0.126 3.874 13 C 0.148 3.852 14 H -0.003 1.003 15 C -0.114 4.114 16 N -0.589 5.589 17 C -0.270 4.270 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.910 5.910 21 Si 0.937 3.063 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.285 1.285 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 -3.712 -13.917 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.071 3.929 3 H 0.011 0.989 4 C -0.015 4.015 5 N -0.323 5.323 6 C 0.402 3.598 7 O -0.501 6.501 8 O -0.285 6.285 9 C -0.034 4.034 10 C 0.013 3.987 11 F -0.217 7.217 12 C 0.003 3.997 13 C 0.042 3.958 14 H 0.015 0.985 15 C -0.172 4.172 16 N -0.314 5.314 17 C -0.400 4.400 18 H 0.072 0.928 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.764 3.236 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.211 1.211 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.241 -3.564 -13.924 15.298 hybrid contribution -0.712 0.431 0.879 1.210 sum 4.529 -3.133 -13.045 14.160 Atomic orbital electron populations 1.21835 0.94379 1.02117 1.00869 1.20496 0.94396 0.92107 0.85852 0.98879 1.22324 0.78216 1.01565 0.99374 1.47009 1.07374 1.58045 1.19868 1.18076 0.83887 0.77365 0.80504 1.90904 1.15302 1.63754 1.80093 1.86267 1.41475 1.69986 1.30757 1.23986 0.90594 1.00785 0.88013 1.22441 0.99530 0.82449 0.94255 1.92775 1.85912 1.52123 1.90859 1.22247 0.99596 0.95466 0.82371 1.21007 0.86191 0.94927 0.93690 0.98508 1.21511 1.00287 0.99306 0.96120 1.44244 1.00176 1.67635 1.19385 1.18793 1.11967 0.92400 1.16809 0.92829 1.26088 1.02090 0.95171 0.96094 1.70232 1.37317 1.03767 1.43737 0.85740 0.81299 0.79210 0.77344 1.18573 1.22116 1.21082 0.92238 0.92675 0.92676 0.88940 0.90154 0.87638 0.91154 0.84094 0.87836 0.89920 0.89375 0.91246 0.94014 0.92112 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 7.83 71.98 0.56 -5.18 16 2 C 0.18 7.97 3.29 44.88 0.15 8.12 16 3 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 4 C 0.11 3.96 5.89 86.27 0.51 4.47 16 5 N -0.59 -21.86 2.95 -949.23 -2.80 -24.66 16 6 C 0.65 23.78 8.43 129.79 1.09 24.88 16 7 O -0.61 -24.32 15.54 19.82 0.31 -24.01 16 8 O -0.37 -11.58 8.85 -55.48 -0.49 -12.07 16 9 C 0.04 0.90 5.93 71.98 0.43 1.32 16 10 C 0.07 1.02 7.93 71.98 0.57 1.60 16 11 F -0.24 -5.83 17.35 44.97 0.78 -5.05 16 12 C 0.13 4.61 5.91 86.41 0.51 5.12 16 13 C 0.15 6.35 3.65 45.03 0.16 6.51 16 14 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 15 C -0.11 -4.31 8.18 71.98 0.59 -3.72 16 16 N -0.59 -28.05 2.75 -651.53 -1.79 -29.84 16 17 C -0.27 -13.62 6.63 84.03 0.56 -13.07 16 18 H 0.05 2.71 7.18 -2.91 -0.02 2.69 16 19 C 0.01 0.29 3.08 84.86 0.26 0.55 16 20 N -0.91 -51.32 12.03 21.65 0.26 -51.06 16 21 Si 0.94 41.53 29.62 68.60 2.03 43.56 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H 0.06 2.94 5.03 -2.39 -0.01 2.93 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 2.31 7.56 -2.39 -0.02 2.29 16 28 H 0.09 3.08 6.91 -2.38 -0.02 3.07 16 29 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 30 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 35 H 0.09 3.15 6.99 -2.39 -0.02 3.13 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.78 7.75 -2.39 -0.02 1.76 16 38 H 0.06 2.19 7.43 -2.38 -0.02 2.17 16 39 H 0.25 13.83 8.32 -92.71 -0.77 13.06 16 Total: -1.00 -66.20 315.70 4.72 -61.48 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.03 Total: 11.07 kcal Atomic # 6 Polarization: 25.20 SS G_CDS: 5.39 Total: 30.59 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -4.34 Total: -105.57 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.18 Total: -36.09 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.78 Total: -5.05 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -66.20 4.72 -61.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867598827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.912 kcal (2) G-P(sol) polarization free energy of solvation -66.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds