Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46963 * 2 1 4 4 C 1.50703 * 109.46726 * 240.00039 * 2 1 3 5 5 O 1.21271 * 119.99777 * 239.99941 * 4 2 1 6 6 N 1.34779 * 120.00147 * 60.00451 * 4 2 1 7 7 C 1.39260 * 119.99771 * 185.59332 * 6 4 2 8 8 C 1.39671 * 119.57819 * 18.89021 * 7 6 4 9 9 C 1.38652 * 119.49633 * 179.97438 * 8 7 6 10 10 C 1.38348 * 118.67221 * 0.02562 * 9 8 7 11 11 C 1.40578 * 119.12983 * 359.97438 * 10 9 8 12 12 C 1.41328 * 119.78835 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00325 * 7.19904 * 12 11 10 14 14 C 1.40035 * 120.00010 * 187.19634 * 12 11 10 15 15 N 1.30744 * 119.99479 * 7.23680 * 14 12 11 16 16 Si 1.86795 * 119.99842 * 187.23234 * 14 12 11 17 17 H 1.48493 * 109.47359 * 265.00984 * 16 14 12 18 18 H 1.48495 * 109.47082 * 25.01796 * 16 14 12 19 19 H 1.48502 * 109.46702 * 145.01211 * 16 14 12 20 20 N 1.31903 * 119.57459 * 199.12282 * 7 6 4 21 21 C 1.52997 * 109.47235 * 120.00175 * 2 1 3 22 22 C 1.53785 * 113.61083 * 279.13763 * 21 2 1 23 23 C 1.53954 * 87.01783 * 220.04618 * 22 21 2 24 24 C 1.53780 * 113.61538 * 181.52880 * 21 2 1 25 25 H 1.09004 * 109.47475 * 59.99516 * 1 2 3 26 26 H 1.08992 * 109.47532 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47273 * 300.00379 * 1 2 3 28 28 H 0.96996 * 119.99689 * 5.58621 * 6 4 2 29 29 H 1.07998 * 120.25311 * 359.95761 * 8 7 6 30 30 H 1.08002 * 120.66458 * 179.97438 * 9 8 7 31 31 H 1.07995 * 120.43122 * 180.02562 * 10 9 8 32 32 H 0.97003 * 119.99643 * 180.02562 * 15 14 12 33 33 H 1.09005 * 112.84937 * 50.32887 * 21 2 1 34 34 H 1.09000 * 113.61423 * 334.56408 * 22 21 2 35 35 H 1.09003 * 113.61580 * 105.47176 * 22 21 2 36 36 H 1.09001 * 113.54098 * 270.81132 * 23 22 21 37 37 H 1.08997 * 113.74745 * 139.94198 * 23 22 21 38 38 H 1.08992 * 113.61463 * 254.52848 * 24 21 2 39 39 H 1.09004 * 113.61301 * 25.43464 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.7294 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.0718 -0.9701 -3.5893 8 6 2.4074 -2.3206 -3.4702 9 6 2.7702 -3.0361 -4.6011 10 6 2.7890 -2.3844 -5.8213 11 6 2.4407 -1.0235 -5.8757 12 6 2.4556 -0.3439 -7.1147 13 1 2.6198 -0.8932 -8.0300 14 6 2.2575 1.0417 -7.1557 15 7 2.2001 1.7270 -6.0437 16 14 2.0754 1.9109 -8.7991 17 1 3.3941 2.4435 -9.2262 18 1 1.5771 0.9493 -9.8151 19 1 1.1100 3.0310 -8.6623 20 7 2.1008 -0.3668 -4.7619 21 6 2.0400 -0.7213 1.2492 22 6 2.0344 0.1559 2.5123 23 6 3.3855 -0.4899 2.8693 24 6 3.5733 -0.7443 1.3643 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.2180 0.5830 -2.5452 29 1 2.3848 -2.8039 -2.5047 30 1 3.0337 -4.0811 -4.5307 31 1 3.0668 -2.9144 -6.7203 32 1 2.0625 2.6868 -6.0721 33 1 1.5765 -1.6973 1.3933 34 1 2.1025 1.2234 2.3029 35 1 1.2341 -0.0893 3.2107 36 1 3.2899 -1.4025 3.4578 37 1 4.1094 0.2094 3.2876 38 1 4.0136 -1.7151 1.1372 39 1 4.0629 0.0767 0.8405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = 14.657237 kcal Electronic energy + Delta-G solvation = -20887.739479 eV Core-core repulsion = 17795.786863 eV Total energy + Delta-G solvation = -3091.952616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26097 -38.62431 -37.38872 -34.24525 -33.45463 -32.65917 -30.39426 -29.06040 -26.05635 -25.50104 -25.32526 -23.55182 -21.60177 -21.18919 -19.54225 -19.33605 -17.45628 -17.11732 -16.11275 -15.46982 -15.07205 -14.98344 -14.63473 -14.32308 -13.78794 -13.60229 -12.89909 -12.81140 -12.61537 -12.40007 -12.23128 -12.12260 -11.94403 -11.60948 -11.30983 -11.23448 -11.03126 -10.78858 -10.65078 -10.52069 -10.25587 -10.13877 -10.05985 -9.78035 -9.18618 -8.79133 -8.05019 -7.66251 -7.07405 -6.47124 -4.49326 2.53681 2.90208 3.08526 3.12263 3.23262 3.42338 3.61692 3.94868 4.57947 4.64705 4.69265 4.77553 4.92531 5.07591 5.19836 5.35758 5.43622 5.68179 5.72835 5.77009 5.80319 5.87308 5.92439 5.97107 6.11302 6.18115 6.26489 6.33021 6.45792 6.55226 6.78681 6.82597 6.86939 7.13974 7.50330 7.53057 7.87411 7.92508 8.15208 8.31349 8.68854 8.75714 8.98063 10.04626 10.30679 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.004329 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.978164 B = 6465.864291 C = 7058.519978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.096 0.904 4 C 0.515 3.485 5 O -0.516 6.516 6 N -0.647 5.647 7 C 0.358 3.642 8 C -0.313 4.313 9 C -0.050 4.050 10 C -0.290 4.290 11 C 0.281 3.719 12 C -0.438 4.438 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.726 5.726 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.261 1.261 19 H -0.276 1.276 20 N -0.510 5.510 21 C -0.086 4.086 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.125 4.125 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.405 0.595 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.271 0.729 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 1.200 12.642 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.114 0.886 4 C 0.302 3.698 5 O -0.391 6.391 6 N -0.291 5.291 7 C 0.123 3.877 8 C -0.337 4.337 9 C -0.074 4.074 10 C -0.313 4.313 11 C 0.155 3.845 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.150 4.150 15 N -0.348 5.348 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.201 1.201 20 N -0.229 5.229 21 C -0.105 4.105 22 C -0.173 4.173 23 C -0.184 4.184 24 C -0.162 4.162 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.240 0.760 29 H 0.148 0.852 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.562 1.592 12.774 13.125 hybrid contribution -0.062 0.066 -0.839 0.844 sum -2.624 1.658 11.935 12.332 Atomic orbital electron populations 1.21749 0.92968 1.02782 1.02539 1.21357 0.97424 1.00516 0.92824 0.88632 1.20548 0.80170 0.85100 0.84029 1.90592 1.36295 1.25993 1.86250 1.43265 1.55597 1.25803 1.04471 1.18514 0.94488 0.87621 0.87075 1.21603 1.18098 0.94178 0.99862 1.20815 0.96318 0.97529 0.92783 1.21708 1.15421 0.97393 0.96768 1.18161 0.87589 0.88127 0.90633 1.19547 1.42603 0.92209 0.92675 0.89690 1.26014 0.93321 0.98034 0.97663 1.70066 1.29509 1.07431 1.27748 0.86337 0.78836 0.79333 0.82428 1.19589 1.18475 1.20124 1.67997 1.22615 1.35980 0.96291 1.22321 0.97028 0.98943 0.92210 1.23006 0.97664 0.99342 0.97272 1.22882 0.97445 1.00656 0.97387 1.22807 0.95849 1.02697 0.94852 0.91918 0.92068 0.91563 0.75969 0.85159 0.88398 0.88275 0.91749 0.88904 0.90177 0.91663 0.90474 0.91781 0.90817 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.08 37.16 0.34 -1.21 16 2 C -0.10 -1.28 2.45 -91.77 -0.23 -1.50 16 3 H 0.10 1.10 7.98 -51.93 -0.41 0.69 16 4 C 0.52 9.27 6.81 -10.98 -0.07 9.20 16 5 O -0.52 -10.80 11.75 5.56 0.07 -10.73 16 6 N -0.65 -13.06 5.26 -11.40 -0.06 -13.12 16 7 C 0.36 8.95 7.51 -154.99 -1.16 7.79 16 8 C -0.31 -7.74 8.83 -38.89 -0.34 -8.08 16 9 C -0.05 -1.20 10.15 -39.39 -0.40 -1.60 16 10 C -0.29 -7.40 9.83 -38.66 -0.38 -7.78 16 11 C 0.28 7.83 6.52 -85.00 -0.55 7.28 16 12 C -0.44 -11.80 9.13 -37.73 -0.34 -12.14 16 13 H 0.08 2.14 7.86 -52.49 -0.41 1.73 16 14 C 0.07 1.88 5.47 -17.34 -0.09 1.79 16 15 N -0.73 -19.01 11.56 55.55 0.64 -18.36 16 16 Si 0.91 18.51 29.57 -169.99 -5.03 13.48 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 N -0.51 -14.04 7.99 -10.26 -0.08 -14.12 16 21 C -0.09 -1.03 2.68 -89.81 -0.24 -1.27 16 22 C -0.14 -1.28 7.63 -25.83 -0.20 -1.48 16 23 C -0.15 -1.46 8.09 -25.83 -0.21 -1.67 16 24 C -0.12 -1.59 6.29 -25.92 -0.16 -1.76 16 25 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.41 7.37 8.42 -40.82 -0.34 7.02 16 29 H 0.13 3.16 5.33 -52.50 -0.28 2.88 16 30 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 0.71 7.99 -51.93 -0.41 0.29 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -30.70 322.56 -9.27 -39.97 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.62 Total: 10.47 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -4.05 Total: -12.44 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.50 Total: -45.61 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.70 -9.27 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.626 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds