Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46963 * 2 1 4 4 C 1.50703 * 109.46726 * 240.00039 * 2 1 3 5 5 O 1.21271 * 119.99777 * 239.99941 * 4 2 1 6 6 N 1.34779 * 120.00147 * 60.00451 * 4 2 1 7 7 C 1.39260 * 119.99771 * 185.59332 * 6 4 2 8 8 C 1.39671 * 119.57819 * 18.89021 * 7 6 4 9 9 C 1.38652 * 119.49633 * 179.97438 * 8 7 6 10 10 C 1.38348 * 118.67221 * 0.02562 * 9 8 7 11 11 C 1.40578 * 119.12983 * 359.97438 * 10 9 8 12 12 C 1.41328 * 119.78835 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00325 * 7.19904 * 12 11 10 14 14 C 1.40035 * 120.00010 * 187.19634 * 12 11 10 15 15 N 1.30744 * 119.99479 * 7.23680 * 14 12 11 16 16 Si 1.86795 * 119.99842 * 187.23234 * 14 12 11 17 17 H 1.48493 * 109.47359 * 265.00984 * 16 14 12 18 18 H 1.48495 * 109.47082 * 25.01796 * 16 14 12 19 19 H 1.48502 * 109.46702 * 145.01211 * 16 14 12 20 20 N 1.31903 * 119.57459 * 199.12282 * 7 6 4 21 21 C 1.52997 * 109.47235 * 120.00175 * 2 1 3 22 22 C 1.53785 * 113.61083 * 279.13763 * 21 2 1 23 23 C 1.53954 * 87.01783 * 220.04618 * 22 21 2 24 24 C 1.53780 * 113.61538 * 181.52880 * 21 2 1 25 25 H 1.09004 * 109.47475 * 59.99516 * 1 2 3 26 26 H 1.08992 * 109.47532 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47273 * 300.00379 * 1 2 3 28 28 H 0.96996 * 119.99689 * 5.58621 * 6 4 2 29 29 H 1.07998 * 120.25311 * 359.95761 * 8 7 6 30 30 H 1.08002 * 120.66458 * 179.97438 * 9 8 7 31 31 H 1.07995 * 120.43122 * 180.02562 * 10 9 8 32 32 H 0.97003 * 119.99643 * 180.02562 * 15 14 12 33 33 H 1.09005 * 112.84937 * 50.32887 * 21 2 1 34 34 H 1.09000 * 113.61423 * 334.56408 * 22 21 2 35 35 H 1.09003 * 113.61580 * 105.47176 * 22 21 2 36 36 H 1.09001 * 113.54098 * 270.81132 * 23 22 21 37 37 H 1.08997 * 113.74745 * 139.94198 * 23 22 21 38 38 H 1.08992 * 113.61463 * 254.52848 * 24 21 2 39 39 H 1.09004 * 113.61301 * 25.43464 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.7294 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.0718 -0.9701 -3.5893 8 6 2.4074 -2.3206 -3.4702 9 6 2.7702 -3.0361 -4.6011 10 6 2.7890 -2.3844 -5.8213 11 6 2.4407 -1.0235 -5.8757 12 6 2.4556 -0.3439 -7.1147 13 1 2.6198 -0.8932 -8.0300 14 6 2.2575 1.0417 -7.1557 15 7 2.2001 1.7270 -6.0437 16 14 2.0754 1.9109 -8.7991 17 1 3.3941 2.4435 -9.2262 18 1 1.5771 0.9493 -9.8151 19 1 1.1100 3.0310 -8.6623 20 7 2.1008 -0.3668 -4.7619 21 6 2.0400 -0.7213 1.2492 22 6 2.0344 0.1559 2.5123 23 6 3.3855 -0.4899 2.8693 24 6 3.5733 -0.7443 1.3643 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.2180 0.5830 -2.5452 29 1 2.3848 -2.8039 -2.5047 30 1 3.0337 -4.0811 -4.5307 31 1 3.0668 -2.9144 -6.7203 32 1 2.0625 2.6868 -6.0721 33 1 1.5765 -1.6973 1.3933 34 1 2.1025 1.2234 2.3029 35 1 1.2341 -0.0893 3.2107 36 1 3.2899 -1.4025 3.4578 37 1 4.1094 0.2094 3.2876 38 1 4.0136 -1.7151 1.1372 39 1 4.0629 0.0767 0.8405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = -2.401343 kcal Electronic energy + Delta-G solvation = -20888.479194 eV Core-core repulsion = 17795.786863 eV Total energy + Delta-G solvation = -3092.692331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69590 -40.06332 -38.90056 -35.98922 -35.19260 -33.88042 -32.34788 -30.91997 -27.53092 -26.86745 -26.21241 -24.94242 -23.52609 -22.74680 -21.01092 -20.31408 -19.31439 -18.68300 -17.73928 -16.85767 -16.60817 -16.32299 -16.09978 -15.81494 -15.39750 -15.14258 -14.62222 -14.30732 -13.79961 -13.67871 -13.49719 -13.27673 -13.12286 -12.93996 -12.82255 -12.68250 -12.56029 -12.51915 -12.10904 -11.88329 -11.55213 -11.40377 -11.20879 -11.02406 -10.96201 -10.36591 -10.01314 -9.64323 -8.97889 -8.37669 -6.51560 0.73283 1.07619 1.42283 1.51378 1.57211 1.80195 2.11450 2.23889 2.85678 3.50314 3.72366 3.76028 3.90563 3.98755 4.06694 4.29732 4.31455 4.40776 4.44253 4.63985 4.84155 4.86660 4.89193 4.91285 4.93033 4.95874 4.97893 5.06524 5.14311 5.21702 5.23045 5.30492 5.43041 5.61031 5.65499 5.67739 5.91609 6.06438 6.26252 6.52681 6.77350 6.92755 7.26249 8.08036 8.43172 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.004329 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.978164 B = 6465.864291 C = 7058.519978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.115 0.885 4 C 0.511 3.489 5 O -0.547 6.547 6 N -0.646 5.646 7 C 0.348 3.652 8 C -0.328 4.328 9 C -0.049 4.049 10 C -0.310 4.310 11 C 0.247 3.753 12 C -0.469 4.469 13 H 0.091 0.909 14 C 0.030 3.970 15 N -0.757 5.757 16 Si 0.989 3.011 17 H -0.264 1.264 18 H -0.257 1.257 19 H -0.266 1.266 20 N -0.536 5.536 21 C -0.091 4.091 22 C -0.118 4.118 23 C -0.138 4.138 24 C -0.138 4.138 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.414 0.586 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.281 0.719 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 2.568 13.534 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.133 0.867 4 C 0.300 3.700 5 O -0.424 6.424 6 N -0.291 5.291 7 C 0.112 3.888 8 C -0.353 4.353 9 C -0.073 4.073 10 C -0.333 4.333 11 C 0.121 3.879 12 C -0.501 4.501 13 H 0.109 0.891 14 C -0.192 4.192 15 N -0.379 5.379 16 Si 0.809 3.191 17 H -0.189 1.189 18 H -0.180 1.180 19 H -0.191 1.191 20 N -0.256 5.256 21 C -0.110 4.110 22 C -0.155 4.155 23 C -0.175 4.175 24 C -0.176 4.176 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.250 0.750 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.432 2.954 13.705 14.434 hybrid contribution 0.253 -0.417 -1.042 1.150 sum -3.179 2.538 12.663 13.300 Atomic orbital electron populations 1.21764 0.91008 1.02765 1.04085 1.21432 0.98836 1.00655 0.89984 0.86718 1.21662 0.79016 0.84739 0.84538 1.90564 1.37619 1.27625 1.86614 1.43377 1.55766 1.25973 1.03990 1.18920 0.93716 0.88327 0.87804 1.21827 1.18692 0.94500 1.00274 1.21175 0.95098 0.98981 0.92085 1.21885 1.16412 0.97095 0.97918 1.18683 0.88345 0.89431 0.91456 1.19940 1.43740 0.93615 0.92775 0.89066 1.26949 0.92300 0.98128 1.01863 1.70137 1.29337 1.08231 1.30205 0.85100 0.79080 0.77957 0.76961 1.18854 1.18016 1.19058 1.68037 1.23889 1.36666 0.96973 1.22381 0.96031 0.99400 0.93146 1.22954 0.97690 0.99403 0.95494 1.22861 0.98208 1.01354 0.95071 1.22839 0.96464 1.00819 0.97480 0.92046 0.92902 0.88331 0.74983 0.84881 0.85301 0.86947 0.90843 0.89669 0.88882 0.89672 0.89803 0.90651 0.93591 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.08 71.98 0.65 -2.04 16 2 C -0.09 -2.12 2.45 -11.54 -0.03 -2.14 16 3 H 0.11 2.38 7.98 -2.39 -0.02 2.36 16 4 C 0.51 18.50 6.81 87.66 0.60 19.10 16 5 O -0.55 -23.46 11.75 -3.00 -0.04 -23.50 16 6 N -0.65 -26.46 5.26 -308.37 -1.62 -28.08 16 7 C 0.35 17.87 7.51 133.25 1.00 18.87 16 8 C -0.33 -16.60 8.83 22.72 0.20 -16.40 16 9 C -0.05 -2.38 10.15 22.39 0.23 -2.16 16 10 C -0.31 -16.18 9.83 22.87 0.22 -15.95 16 11 C 0.25 14.15 6.52 40.19 0.26 14.41 16 12 C -0.47 -25.72 9.13 23.47 0.21 -25.51 16 13 H 0.09 4.67 7.86 -2.91 -0.02 4.65 16 14 C 0.03 1.49 5.47 85.29 0.47 1.96 16 15 N -0.76 -40.01 11.56 21.84 0.25 -39.76 16 16 Si 0.99 37.65 29.57 68.60 2.03 39.68 16 17 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 19 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 20 N -0.54 -30.34 7.99 -186.37 -1.49 -31.83 16 21 C -0.09 -2.04 2.68 -10.27 -0.03 -2.06 16 22 C -0.12 -1.84 7.63 31.18 0.24 -1.60 16 23 C -0.14 -2.46 8.09 31.18 0.25 -2.20 16 24 C -0.14 -3.50 6.29 31.12 0.20 -3.31 16 25 H 0.06 1.22 7.70 -2.38 -0.02 1.20 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.41 15.18 8.42 -92.71 -0.78 14.39 16 29 H 0.13 6.61 5.33 -3.15 -0.02 6.59 16 30 H 0.13 5.30 8.06 -2.91 -0.02 5.27 16 31 H 0.11 5.35 8.06 -2.91 -0.02 5.33 16 32 H 0.28 13.26 8.29 -92.71 -0.77 12.49 16 33 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.09 1.26 7.99 -2.39 -0.02 1.24 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.38 8.00 -2.39 -0.02 1.36 16 39 H 0.06 1.75 8.10 -2.38 -0.02 1.73 16 Total: -1.00 -68.46 322.56 3.88 -64.58 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.27 Total: 37.96 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.48 Total: -19.05 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -2.86 Total: -99.68 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.04 Total: -23.50 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -68.46 3.88 -64.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.180 kcal (2) G-P(sol) polarization free energy of solvation -68.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds