Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47252 * 2 1 4 4 C 1.50701 * 109.46862 * 120.00001 * 2 1 3 5 5 O 1.21274 * 120.00164 * 119.99961 * 4 2 1 6 6 N 1.34772 * 120.00184 * 299.99457 * 4 2 1 7 7 C 1.39266 * 120.00178 * 183.70877 * 6 4 2 8 8 C 1.39670 * 119.57531 * 339.09852 * 7 6 4 9 9 C 1.38651 * 119.49847 * 180.02562 * 8 7 6 10 10 C 1.38348 * 118.66698 * 0.02562 * 9 8 7 11 11 C 1.40568 * 119.13211 * 0.02562 * 10 9 8 12 12 C 1.41343 * 119.78994 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99412 * 5.12922 * 12 11 10 14 14 C 1.40032 * 119.99979 * 185.12572 * 12 11 10 15 15 N 1.30740 * 119.99405 * 184.82118 * 14 12 11 16 16 Si 1.86801 * 120.00059 * 4.82590 * 14 12 11 17 17 H 1.48497 * 109.46594 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47059 * 299.99694 * 16 14 12 19 19 H 1.48494 * 109.46919 * 59.99611 * 16 14 12 20 20 N 1.31907 * 119.57624 * 159.40138 * 7 6 4 21 21 C 1.52998 * 109.46817 * 239.99580 * 2 1 3 22 22 C 1.53781 * 113.61285 * 157.50018 * 21 2 1 23 23 C 1.53788 * 87.07931 * 220.01908 * 22 21 2 24 24 C 1.53775 * 87.07907 * 25.43239 * 23 22 21 25 25 H 1.09006 * 109.46501 * 300.00190 * 1 2 3 26 26 H 1.08997 * 109.47194 * 59.99603 * 1 2 3 27 27 H 1.08995 * 109.47384 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00073 * 3.70495 * 6 4 2 29 29 H 1.08001 * 120.25150 * 0.05088 * 8 7 6 30 30 H 1.08002 * 120.66679 * 179.97438 * 9 8 7 31 31 H 1.08000 * 120.43297 * 180.02562 * 10 9 8 32 32 H 0.96997 * 120.00534 * 354.98929 * 15 14 12 33 33 H 1.09003 * 112.85419 * 288.80304 * 21 2 1 34 34 H 1.09001 * 113.61781 * 334.56836 * 22 21 2 35 35 H 1.09000 * 113.61328 * 105.47155 * 22 21 2 36 36 H 1.08999 * 113.61010 * 270.88285 * 23 22 21 37 37 H 1.09002 * 113.68753 * 139.99484 * 23 22 21 38 38 H 1.09007 * 113.61400 * 220.01597 * 24 23 22 39 39 H 1.09003 * 113.69157 * 89.12758 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.2333 -0.8595 3.5906 8 6 2.7197 -2.1663 3.5091 9 6 3.2431 -2.7718 4.6412 10 6 3.2667 -2.0570 5.8255 11 6 2.7610 -0.7455 5.8433 12 6 2.7777 -0.0028 7.0458 13 1 3.2524 -0.4109 7.9259 14 6 2.1789 1.2620 7.0959 15 7 2.2757 1.9886 8.1784 16 14 1.2417 1.9110 5.6160 17 1 0.7071 3.2621 5.9224 18 1 2.1554 1.9927 4.4483 19 1 0.1171 0.9937 5.3013 20 7 2.2607 -0.1976 4.7312 21 6 2.0399 -0.7213 -1.2492 22 6 3.4726 -0.3278 -1.6460 23 6 2.9920 -0.3575 -3.1066 24 6 1.5811 -0.0724 -2.5657 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.1058 0.5061 2.5443 29 1 2.6888 -2.7008 2.5711 30 1 3.6240 -3.7816 4.5996 31 1 3.6683 -2.5008 6.7244 32 1 2.6990 1.6237 8.9713 33 1 1.8758 -1.7983 -1.2128 34 1 3.7639 0.6647 -1.3023 35 1 4.2150 -1.0917 -1.4151 36 1 3.0895 -1.3352 -3.5785 37 1 3.3969 0.4495 -3.7173 38 1 0.7964 -0.6301 -3.0771 39 1 1.3539 0.9896 -2.4730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = -17.242569 kcal Electronic energy + Delta-G solvation = -21024.064145 eV Core-core repulsion = 17930.728250 eV Total energy + Delta-G solvation = -3093.335895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89098 -40.35195 -39.12687 -36.25679 -35.44114 -33.93012 -33.00714 -31.15727 -27.43175 -27.00151 -26.09089 -25.11368 -23.65457 -22.86901 -21.16161 -20.29123 -20.20830 -18.95252 -17.97017 -17.05087 -16.80835 -16.36015 -16.13220 -15.76006 -15.50373 -15.30660 -14.80139 -14.61282 -14.26744 -13.86943 -13.75412 -13.47528 -13.37682 -13.12038 -12.76118 -12.75359 -12.46153 -12.22697 -12.10287 -11.72418 -11.65735 -11.37213 -11.16270 -11.13098 -10.99756 -10.55143 -10.37452 -9.71861 -9.37394 -9.18874 -6.84567 0.50718 0.71341 1.53964 1.56797 1.74075 1.86208 2.07998 2.45460 2.65208 3.43185 3.53436 3.72110 3.72422 3.94789 4.03683 4.08408 4.31308 4.35889 4.41658 4.47667 4.64729 4.67069 4.79707 4.86214 4.89759 4.93391 4.95436 5.06886 5.14939 5.19784 5.32357 5.33615 5.37260 5.42115 5.43408 5.67422 5.71598 5.80089 5.92305 6.30122 6.40177 6.63670 7.08022 7.47977 7.93046 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.025363 B = 0.005034 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.718879 B = 5560.907426 C = 6267.745262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.119 0.881 4 C 0.517 3.483 5 O -0.540 6.540 6 N -0.654 5.654 7 C 0.374 3.626 8 C -0.313 4.313 9 C -0.029 4.029 10 C -0.294 4.294 11 C 0.258 3.742 12 C -0.510 4.510 13 H 0.068 0.932 14 C 0.014 3.986 15 N -0.829 5.829 16 Si 1.186 2.814 17 H -0.327 1.327 18 H -0.275 1.275 19 H -0.291 1.291 20 N -0.611 5.611 21 C -0.093 4.093 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.120 4.120 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.416 0.584 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.114 0.886 32 H 0.281 0.719 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -1.388 -20.896 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.137 0.863 4 C 0.307 3.693 5 O -0.417 6.417 6 N -0.299 5.299 7 C 0.143 3.857 8 C -0.337 4.337 9 C -0.053 4.053 10 C -0.316 4.316 11 C 0.132 3.868 12 C -0.543 4.543 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.452 5.452 16 Si 1.018 2.982 17 H -0.261 1.261 18 H -0.203 1.203 19 H -0.219 1.219 20 N -0.337 5.337 21 C -0.112 4.112 22 C -0.183 4.183 23 C -0.175 4.175 24 C -0.157 4.157 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.254 0.746 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.879 0.028 -21.419 21.968 hybrid contribution 1.462 -2.065 1.887 3.157 sum -3.416 -2.038 -19.532 19.933 Atomic orbital electron populations 1.21825 0.90711 1.03166 1.04411 1.21497 0.99130 1.00834 0.89688 0.86321 1.21716 0.78955 0.84350 0.84325 1.90530 1.38134 1.26688 1.86317 1.43501 1.47426 1.34953 1.04069 1.18563 0.92063 0.89162 0.85918 1.22115 1.14410 0.95528 1.01611 1.21364 0.93441 0.99113 0.91381 1.21767 1.13902 0.96723 0.99242 1.18452 0.87688 0.90805 0.89815 1.20738 1.33619 1.03500 0.96400 0.91425 1.28613 0.93993 0.93105 1.04508 1.70666 1.33447 1.37782 1.03310 0.81473 0.74721 0.71369 0.70673 1.26084 1.20302 1.21902 1.66006 1.31020 1.36719 0.99986 1.22387 0.96612 0.99695 0.92520 1.22999 0.96433 1.01198 0.97665 1.22783 0.96991 1.02351 0.95330 1.22926 0.96979 1.01790 0.93994 0.91679 0.88216 0.92483 0.74644 0.82823 0.83968 0.86816 0.90871 0.90009 0.90140 0.93479 0.90228 0.90387 0.90230 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.89 71.98 0.64 -1.55 16 2 C -0.09 -1.81 2.48 -11.54 -0.03 -1.84 16 3 H 0.12 1.99 7.94 -2.39 -0.02 1.97 16 4 C 0.52 16.08 7.04 87.66 0.62 16.70 16 5 O -0.54 -20.18 12.50 -3.01 -0.04 -20.22 16 6 N -0.65 -23.19 5.33 -308.37 -1.64 -24.83 16 7 C 0.37 16.88 7.51 133.25 1.00 17.88 16 8 C -0.31 -13.76 8.90 22.71 0.20 -13.56 16 9 C -0.03 -1.23 10.15 22.39 0.23 -1.00 16 10 C -0.29 -14.13 9.83 22.86 0.22 -13.90 16 11 C 0.26 13.79 6.40 40.19 0.26 14.05 16 12 C -0.51 -28.89 9.57 23.47 0.22 -28.66 16 13 H 0.07 3.89 8.05 -2.91 -0.02 3.87 16 14 C 0.01 0.79 5.52 85.29 0.47 1.26 16 15 N -0.83 -46.46 13.65 21.84 0.30 -46.16 16 16 Si 1.19 56.31 25.61 68.60 1.76 58.07 16 17 H -0.33 -15.12 7.11 99.48 0.71 -14.41 16 18 H -0.28 -12.72 6.60 99.48 0.66 -12.07 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 N -0.61 -30.91 4.54 -186.36 -0.85 -31.75 16 21 C -0.09 -1.78 2.54 -10.27 -0.03 -1.81 16 22 C -0.15 -2.91 7.60 31.12 0.24 -2.67 16 23 C -0.14 -1.98 8.08 31.12 0.25 -1.73 16 24 C -0.12 -1.51 6.68 31.12 0.21 -1.30 16 25 H 0.06 0.97 7.49 -2.38 -0.02 0.96 16 26 H 0.10 0.98 7.45 -2.39 -0.02 0.97 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.42 12.77 8.14 -92.71 -0.75 12.02 16 29 H 0.15 6.57 5.17 -9.81 -0.05 6.52 16 30 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 31 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 32 H 0.28 15.25 8.72 -92.71 -0.81 14.44 16 33 H 0.08 1.86 7.86 -2.39 -0.02 1.84 16 34 H 0.08 1.55 7.96 -2.39 -0.02 1.53 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.10 0.96 8.10 -2.39 -0.02 0.94 16 Total: -1.00 -66.46 317.34 4.21 -62.25 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.18 Total: 20.78 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.51 Total: -18.14 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -2.19 Total: -102.74 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.04 Total: -20.22 kcal Atomic # 14 Polarization: 56.31 SS G_CDS: 1.76 Total: 58.07 kcal Total: -66.46 4.21 -62.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.009 kcal (2) G-P(sol) polarization free energy of solvation -66.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds