Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 110.43445 * 2 1 4 4 C 1.54261 * 110.60158 * 237.37837 * 2 1 3 5 5 C 1.53874 * 106.60202 * 217.65734 * 4 2 1 6 6 C 1.54268 * 106.59789 * 359.97438 * 5 4 2 7 7 H 1.08991 * 110.48841 * 264.93232 * 6 5 4 8 8 C 1.50704 * 110.48328 * 142.41957 * 6 5 4 9 9 O 1.21270 * 120.00134 * 241.45502 * 8 6 5 10 10 N 1.34777 * 119.99965 * 61.45749 * 8 6 5 11 11 C 1.37212 * 119.99920 * 356.17029 * 10 8 6 12 12 H 1.08004 * 120.00084 * 5.20081 * 11 10 8 13 13 C 1.38896 * 120.00021 * 185.19853 * 11 10 8 14 14 N 1.31417 * 119.99691 * 354.65372 * 13 11 10 15 15 Si 1.86799 * 119.99925 * 174.65441 * 13 11 10 16 16 H 1.48498 * 109.47130 * 90.00103 * 15 13 11 17 17 H 1.48501 * 109.46763 * 209.99993 * 15 13 11 18 18 H 1.48504 * 109.47187 * 330.00092 * 15 13 11 19 19 C 1.39425 * 119.99929 * 176.17397 * 10 8 6 20 20 C 1.39056 * 119.69877 * 94.46242 * 19 10 8 21 21 C 1.38383 * 119.09823 * 179.70787 * 20 19 10 22 22 C 1.38826 * 118.48974 * 0.55198 * 21 20 19 23 23 C 1.38145 * 119.31084 * 359.73073 * 22 21 20 24 24 N 1.31870 * 120.85475 * 359.97438 * 23 22 21 25 25 C 1.54886 * 104.19422 * 23.61243 * 6 5 4 26 26 H 1.09003 * 109.47078 * 297.46258 * 1 2 3 27 27 H 1.09001 * 109.47463 * 57.45688 * 1 2 3 28 28 H 1.08997 * 109.47663 * 177.46394 * 1 2 3 29 29 H 1.08998 * 110.03437 * 98.36729 * 4 2 1 30 30 H 1.09000 * 110.03041 * 336.94367 * 4 2 1 31 31 H 1.08996 * 110.03233 * 240.71331 * 5 4 2 32 32 H 1.08995 * 110.03316 * 119.28256 * 5 4 2 33 33 H 0.96995 * 119.99327 * 179.97438 * 14 13 11 34 34 H 1.08004 * 120.45454 * 359.97438 * 20 19 10 35 35 H 1.07997 * 120.75406 * 180.25978 * 21 20 19 36 36 H 1.08005 * 120.34058 * 179.70428 * 22 21 20 37 37 H 1.08006 * 119.56783 * 179.97438 * 23 22 21 38 38 H 1.09003 * 110.76106 * 80.37082 * 25 6 5 39 39 H 1.09003 * 110.75894 * 203.55897 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0727 -0.7784 -1.2162 5 6 3.3202 -1.5376 -0.7312 6 6 3.4923 -1.1935 0.7628 7 1 4.1898 -0.3650 0.8855 8 6 3.9680 -2.4000 1.5304 9 8 3.2846 -2.8609 2.4199 10 7 5.1529 -2.9667 1.2284 11 6 5.8897 -2.4945 0.1716 12 1 5.5621 -1.6168 -0.3658 13 6 7.0570 -3.1452 -0.2070 14 7 7.5119 -4.1485 0.5095 15 14 7.9800 -2.5942 -1.7347 16 1 8.9740 -1.5550 -1.3646 17 1 8.6805 -3.7574 -2.3361 18 1 7.0192 -2.0324 -2.7179 19 6 5.6300 -4.0328 1.9899 20 6 5.3850 -5.3380 1.5774 21 6 5.8695 -6.3867 2.3393 22 6 6.5751 -6.0926 3.4981 23 6 6.7761 -4.7722 3.8508 24 7 6.3075 -3.7932 3.1018 25 6 2.0726 -0.7796 1.2232 26 1 -0.3633 0.4739 0.9119 27 1 -0.3634 0.5528 -0.8663 28 1 -0.3634 -1.0266 -0.0455 29 1 2.3436 -0.0853 -2.0126 30 1 1.3221 -1.4834 -1.5736 31 1 4.1964 -1.2129 -1.2921 32 1 3.1749 -2.6109 -0.8531 33 1 8.3268 -4.6032 0.2449 34 1 4.8279 -5.5307 0.6724 35 1 5.6984 -7.4107 2.0417 36 1 6.9624 -6.8880 4.1177 37 1 7.3241 -4.5387 4.7518 38 1 1.4598 -1.6586 1.4234 39 1 2.1235 -0.1376 2.1026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892471980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -14.901314 kcal Electronic energy + Delta-G solvation = -21785.990060 eV Core-core repulsion = 18692.755690 eV Total energy + Delta-G solvation = -3093.234370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59013 -40.11659 -38.28291 -36.77038 -33.61953 -32.98058 -32.50384 -30.75960 -29.66107 -26.97191 -26.39061 -24.15086 -24.04568 -22.22663 -20.82339 -20.62756 -19.65411 -17.98097 -17.40499 -16.91253 -16.82286 -16.48380 -16.10927 -15.56214 -15.19097 -14.84649 -14.43408 -14.25160 -14.07341 -13.92094 -13.74548 -13.40103 -13.00323 -12.93539 -12.77255 -12.42663 -12.36854 -12.11354 -11.96685 -11.63832 -11.63033 -11.54124 -11.33791 -11.13404 -10.55128 -10.44044 -10.28852 -9.81378 -9.60381 -8.09394 -5.96459 0.63609 0.79117 1.40164 1.44636 1.56192 1.88998 2.23310 2.71787 3.16365 3.27240 3.71296 3.72992 3.92463 4.05642 4.19841 4.38299 4.45738 4.51348 4.55012 4.59789 4.62851 4.68261 4.79777 4.80305 4.86892 5.02519 5.07247 5.11906 5.15233 5.24242 5.34021 5.41997 5.46580 5.48575 5.49919 5.52081 5.64849 5.72265 6.08959 6.49617 7.06601 7.44495 7.52207 7.89120 8.72191 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.007444 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.541501 B = 3760.690834 C = 5025.014886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.088 0.912 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.091 4.091 7 H 0.094 0.906 8 C 0.467 3.533 9 O -0.631 6.631 10 N -0.425 5.425 11 C -0.348 4.348 12 H 0.132 0.868 13 C -0.015 4.015 14 N -0.889 5.889 15 Si 0.996 3.004 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.248 1.248 19 C 0.434 3.566 20 C -0.150 4.150 21 C -0.076 4.076 22 C -0.195 4.195 23 C 0.091 3.909 24 N -0.537 5.537 25 C -0.095 4.095 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.053 0.947 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 2.673 -3.816 7.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.151 4.151 5 C -0.138 4.138 6 C -0.112 4.112 7 H 0.112 0.888 8 C 0.258 3.742 9 O -0.518 6.518 10 N -0.142 5.142 11 C -0.474 4.474 12 H 0.149 0.851 13 C -0.216 4.216 14 N -0.527 5.527 15 Si 0.819 3.181 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.171 1.171 19 C 0.208 3.792 20 C -0.173 4.173 21 C -0.102 4.102 22 C -0.215 4.215 23 C -0.066 4.066 24 N -0.251 5.251 25 C -0.133 4.133 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.072 0.928 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.474 3.177 -3.178 7.082 hybrid contribution 0.986 -0.980 -0.599 1.513 sum -4.488 2.198 -3.777 6.264 Atomic orbital electron populations 1.21759 0.93719 1.01724 1.02376 1.21970 0.96454 0.99227 0.93216 0.89376 1.22246 0.96002 0.98912 0.97905 1.22083 0.99374 0.99785 0.92590 1.21890 0.98549 0.94287 0.96458 0.88828 1.21021 0.81074 0.86995 0.85113 1.90501 1.57624 1.67175 1.36520 1.41613 1.17259 1.28753 1.26579 1.20475 1.05884 1.13810 1.07251 0.85089 1.26200 0.97807 0.95955 1.01671 1.69807 1.22131 1.22315 1.38428 0.84865 0.78259 0.77391 0.77577 1.20562 1.21181 1.17129 1.17767 0.87602 0.86972 0.86850 1.21582 1.02314 0.93411 0.99961 1.21513 0.95488 0.98975 0.94198 1.22101 1.02638 0.97896 0.98896 1.22722 0.96734 0.89147 0.97996 1.67093 1.11088 1.39335 1.07564 1.22369 0.93269 0.99451 0.98191 0.92384 0.90905 0.93379 0.89679 0.91419 0.90426 0.93862 0.92172 0.88174 0.83003 0.82044 0.81892 0.92785 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.15 71.98 0.66 -2.21 16 2 C -0.09 -2.25 3.45 -9.73 -0.03 -2.28 16 3 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 4 C -0.11 -2.88 6.38 31.32 0.20 -2.68 16 5 C -0.10 -3.42 5.00 31.32 0.16 -3.27 16 6 C -0.09 -3.57 2.36 -10.46 -0.02 -3.60 16 7 H 0.09 3.57 8.03 -2.39 -0.02 3.55 16 8 C 0.47 23.86 6.89 87.66 0.60 24.46 16 9 O -0.63 -36.00 15.75 -3.00 -0.05 -36.05 16 10 N -0.42 -22.75 2.74 -464.37 -1.27 -24.02 16 11 C -0.35 -17.64 8.71 84.01 0.73 -16.91 16 12 H 0.13 5.96 4.45 -2.91 -0.01 5.95 16 13 C -0.02 -0.76 5.44 84.91 0.46 -0.30 16 14 N -0.89 -47.31 9.56 21.65 0.21 -47.11 16 15 Si 1.00 39.53 29.56 68.60 2.03 41.56 16 16 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.29 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 19 C 0.43 23.53 3.05 132.90 0.41 23.93 16 20 C -0.15 -7.41 8.57 22.50 0.19 -7.22 16 21 C -0.08 -3.04 10.17 22.45 0.23 -2.81 16 22 C -0.20 -7.31 10.11 22.39 0.23 -7.09 16 23 C 0.09 3.95 11.18 84.66 0.95 4.90 16 24 N -0.54 -28.74 10.31 -192.96 -1.99 -30.73 16 25 C -0.09 -3.22 5.34 31.88 0.17 -3.05 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.65 7.80 -2.39 -0.02 1.63 16 31 H 0.08 2.57 6.44 -2.39 -0.02 2.55 16 32 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 33 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 35 H 0.15 4.80 8.06 -2.91 -0.02 4.78 16 36 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.16 5.80 8.06 -2.91 -0.02 5.77 16 38 H 0.05 2.07 7.45 -2.39 -0.02 2.05 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -69.46 316.35 4.89 -64.57 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 1.04 Total: 29.91 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 4.92 Total: 1.87 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -3.05 Total: -101.86 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.05 Total: -36.05 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -69.46 4.89 -64.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.671 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds