Wall clock time and date at job start Mon Mar 30 2020 02:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.79771 * 2 1 4 4 C 1.54595 * 110.74161 * 236.70971 * 2 1 3 5 5 N 1.47914 * 102.62358 * 267.19454 * 4 2 1 6 6 C 1.46899 * 110.99641 * 210.87492 * 5 4 2 7 7 C 1.50691 * 109.47416 * 303.38228 * 6 5 4 8 8 O 1.21282 * 120.00367 * 353.91141 * 7 6 5 9 9 N 1.34785 * 119.99869 * 173.90909 * 7 6 5 10 10 C 1.46498 * 119.99514 * 180.02562 * 9 7 6 11 11 C 1.50708 * 109.46970 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99371 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00046 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 120.00167 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47366 * 89.99208 * 15 13 11 17 17 H 1.48492 * 109.47212 * 209.99357 * 15 13 11 18 18 H 1.48502 * 109.46952 * 329.99386 * 15 13 11 19 19 C 1.40034 * 107.87031 * 332.68441 * 5 4 2 20 20 C 1.39404 * 129.94953 * 198.29720 * 19 5 4 21 21 C 1.37912 * 120.19647 * 180.38749 * 20 19 5 22 22 C 1.38305 * 120.26474 * 359.79165 * 21 20 19 23 23 C 1.38309 * 119.88263 * 0.34350 * 22 21 20 24 24 C 1.37920 * 120.08189 * 359.51269 * 23 22 21 25 25 H 1.08992 * 109.47226 * 298.15900 * 1 2 3 26 26 H 1.09001 * 109.46871 * 58.16451 * 1 2 3 27 27 H 1.08999 * 109.46765 * 178.16223 * 1 2 3 28 28 H 1.08999 * 110.78018 * 148.90670 * 4 2 1 29 29 H 1.09010 * 110.94198 * 25.54839 * 4 2 1 30 30 H 1.09002 * 109.47370 * 63.38732 * 6 5 4 31 31 H 1.09003 * 109.47094 * 183.38223 * 6 5 4 32 32 H 0.96995 * 120.00183 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47370 * 299.99683 * 10 9 7 34 34 H 1.08994 * 109.47547 * 60.00345 * 10 9 7 35 35 H 0.96999 * 119.99843 * 180.02562 * 14 13 11 36 36 H 1.07994 * 119.89939 * 0.40971 * 20 19 5 37 37 H 1.07996 * 119.86792 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.05927 * 180.11139 * 22 21 20 39 39 H 1.08000 * 119.95809 * 179.79240 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0776 -0.7935 -1.2085 5 7 2.2582 -2.1508 -0.6490 6 6 3.3748 -2.8457 -1.3034 7 6 3.1358 -2.8913 -2.7905 8 8 2.0854 -2.4940 -3.2484 9 7 4.0894 -3.3738 -3.6118 10 6 3.8571 -3.4177 -5.0576 11 6 5.0680 -3.9960 -5.7436 12 1 5.9246 -4.3008 -5.1607 13 6 5.0818 -4.1370 -7.1150 14 7 6.1387 -4.6412 -7.7136 15 14 3.5999 -3.6105 -8.1231 16 1 3.7495 -2.1864 -8.5166 17 1 3.5054 -4.4535 -9.3418 18 1 2.3665 -3.7729 -7.3120 19 6 2.4845 -2.0218 0.7269 20 6 3.0365 -2.9270 1.6320 21 6 3.1598 -2.5889 2.9633 22 6 2.7409 -1.3485 3.4092 23 6 2.1896 -0.4460 2.5179 24 6 2.0668 -0.7780 1.1849 25 1 -0.3633 0.4849 0.9060 26 1 -0.3633 0.5421 -0.8731 27 1 -0.3633 -1.0271 -0.0330 28 1 3.0307 -0.3825 -1.5413 29 1 1.3566 -0.8051 -2.0260 30 1 4.3035 -2.3121 -1.1009 31 1 3.4477 -3.8618 -0.9157 32 1 4.9293 -3.6920 -3.2457 33 1 2.9885 -4.0419 -5.2674 34 1 3.6771 -2.4084 -5.4275 35 1 6.1485 -4.7400 -8.6785 36 1 3.3690 -3.8958 1.2895 37 1 3.5887 -3.2941 3.6598 38 1 2.8407 -1.0865 4.4522 39 1 1.8590 0.5217 2.8653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915684285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:17 Heat of formation + Delta-G solvation = 0.186055 kcal Electronic energy + Delta-G solvation = -20605.055260 eV Core-core repulsion = 17512.475126 eV Total energy + Delta-G solvation = -3092.580133 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05980 -38.89559 -36.66414 -34.37054 -33.89758 -32.39887 -30.24150 -29.74272 -28.59772 -27.06783 -25.22065 -22.85942 -22.16053 -21.13487 -20.69625 -19.79789 -17.34325 -16.83849 -16.28188 -15.88122 -15.60678 -15.39467 -15.01645 -14.60790 -14.09524 -13.79321 -13.71185 -13.39422 -13.22396 -12.96625 -12.69383 -12.39669 -12.32552 -12.31204 -11.84915 -11.58224 -11.27576 -11.03204 -10.96819 -10.79254 -10.74548 -10.11739 -9.99468 -9.53682 -9.14812 -8.92081 -8.81516 -8.21900 -7.76571 -6.24792 -4.27538 1.26462 1.29062 3.11177 3.24275 3.30679 3.39243 3.40284 3.71790 3.99020 4.30313 4.45578 4.49154 4.87226 4.88003 4.99100 5.10078 5.11097 5.23558 5.28737 5.32403 5.37128 5.38855 5.56967 5.61306 5.73336 5.81537 5.85846 6.04735 6.20539 6.22976 6.37389 6.43651 6.63454 6.73198 6.86104 7.02282 7.14165 7.18122 7.33955 8.07928 8.44774 8.70514 8.85040 9.34920 10.87117 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.003744 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.742565 B = 7476.196240 C = 8128.396126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 H 0.084 0.916 4 C 0.055 3.945 5 N -0.454 5.454 6 C 0.028 3.972 7 C 0.500 3.500 8 O -0.542 6.542 9 N -0.704 5.704 10 C 0.222 3.778 11 C -0.545 4.545 12 H 0.080 0.920 13 C 0.078 3.922 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.261 1.261 19 C 0.103 3.897 20 C -0.142 4.142 21 C -0.094 4.094 22 C -0.151 4.151 23 C -0.079 4.079 24 C -0.136 4.136 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.397 0.603 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.268 0.732 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 7.769 20.704 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.077 4.077 3 H 0.102 0.898 4 C -0.070 4.070 5 N -0.167 5.167 6 C -0.101 4.101 7 C 0.284 3.716 8 O -0.420 6.420 9 N -0.353 5.353 10 C 0.100 3.900 11 C -0.583 4.583 12 H 0.098 0.902 13 C -0.126 4.126 14 N -0.529 5.529 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.185 1.185 19 C 0.004 3.996 20 C -0.163 4.163 21 C -0.113 4.113 22 C -0.170 4.170 23 C -0.098 4.098 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.230 0.770 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.474 7.671 19.927 22.622 hybrid contribution 0.463 0.271 -0.361 0.647 sum -7.011 7.942 19.566 22.250 Atomic orbital electron populations 1.21691 0.93160 1.02731 1.01506 1.20938 0.96775 0.98678 0.91317 0.89780 1.23431 1.01867 0.84218 0.97523 1.60182 1.37653 1.18846 1.00037 1.22262 0.92670 1.01631 0.93563 1.20222 0.84635 0.78972 0.87818 1.90644 1.25857 1.48107 1.77382 1.46160 1.17878 1.62170 1.09123 1.19497 0.97888 0.96865 0.75760 1.21085 1.01022 1.43461 0.92723 0.90243 1.24796 0.96152 0.94109 0.97548 1.69880 1.28734 1.44059 1.10216 0.86812 0.83694 0.79101 0.80063 1.19843 1.20852 1.18484 1.19760 0.95863 0.94056 0.89951 1.20490 1.03498 0.99462 0.92840 1.20857 0.99024 0.96615 0.94769 1.20951 1.02272 0.94458 0.99342 1.20357 0.98570 0.99417 0.91446 1.20519 1.03340 0.95101 0.94958 0.92708 0.92055 0.91852 0.92581 0.86767 0.91075 0.87452 0.76970 0.95608 0.96138 0.92217 0.86065 0.85853 0.86077 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.22 37.16 0.34 -1.09 16 2 C -0.06 -0.67 3.67 -90.50 -0.33 -1.01 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.06 0.77 5.06 -2.43 -0.01 0.76 16 5 N -0.45 -6.65 4.92 -170.38 -0.84 -7.48 16 6 C 0.03 0.40 5.02 -4.98 -0.03 0.37 16 7 C 0.50 9.26 7.44 -10.99 -0.08 9.18 16 8 O -0.54 -11.85 14.32 5.56 0.08 -11.77 16 9 N -0.70 -13.88 5.55 -61.47 -0.34 -14.22 16 10 C 0.22 5.37 4.50 -5.19 -0.02 5.35 16 11 C -0.55 -14.78 9.83 -34.44 -0.34 -15.12 16 12 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 15 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 19 C 0.10 1.35 5.95 -83.41 -0.50 0.85 16 20 C -0.14 -1.61 9.54 -39.27 -0.37 -1.99 16 21 C -0.09 -0.91 10.02 -39.68 -0.40 -1.31 16 22 C -0.15 -1.42 10.06 -39.53 -0.40 -1.82 16 23 C -0.08 -0.81 10.03 -39.67 -0.40 -1.21 16 24 C -0.14 -1.64 5.57 -104.04 -0.58 -2.22 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 29 H 0.11 1.82 6.64 -51.92 -0.34 1.47 16 30 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 31 H 0.11 1.32 7.48 -51.93 -0.39 0.93 16 32 H 0.40 6.83 8.32 -40.82 -0.34 6.49 16 33 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.12 1.22 7.47 -52.49 -0.39 0.83 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 321.89 15.07 4.85 4.85 Total: -1.00 -31.78 321.89 -8.96 -40.74 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.60 Total: 3.99 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -3.21 Total: -7.17 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.41 Total: -47.24 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.78 -8.96 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915684285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.924 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds