Wall clock time and date at job start Mon Mar 30 2020 02:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.79771 * 2 1 4 4 C 1.54595 * 110.74161 * 236.70971 * 2 1 3 5 5 N 1.47914 * 102.62358 * 267.19454 * 4 2 1 6 6 C 1.46899 * 110.99641 * 210.87492 * 5 4 2 7 7 C 1.50691 * 109.47416 * 303.38228 * 6 5 4 8 8 O 1.21282 * 120.00367 * 353.91141 * 7 6 5 9 9 N 1.34785 * 119.99869 * 173.90909 * 7 6 5 10 10 C 1.46498 * 119.99514 * 180.02562 * 9 7 6 11 11 C 1.50708 * 109.46970 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99371 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00046 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 120.00167 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47366 * 89.99208 * 15 13 11 17 17 H 1.48492 * 109.47212 * 209.99357 * 15 13 11 18 18 H 1.48502 * 109.46952 * 329.99386 * 15 13 11 19 19 C 1.40034 * 107.87031 * 332.68441 * 5 4 2 20 20 C 1.39404 * 129.94953 * 198.29720 * 19 5 4 21 21 C 1.37912 * 120.19647 * 180.38749 * 20 19 5 22 22 C 1.38305 * 120.26474 * 359.79165 * 21 20 19 23 23 C 1.38309 * 119.88263 * 0.34350 * 22 21 20 24 24 C 1.37920 * 120.08189 * 359.51269 * 23 22 21 25 25 H 1.08992 * 109.47226 * 298.15900 * 1 2 3 26 26 H 1.09001 * 109.46871 * 58.16451 * 1 2 3 27 27 H 1.08999 * 109.46765 * 178.16223 * 1 2 3 28 28 H 1.08999 * 110.78018 * 148.90670 * 4 2 1 29 29 H 1.09010 * 110.94198 * 25.54839 * 4 2 1 30 30 H 1.09002 * 109.47370 * 63.38732 * 6 5 4 31 31 H 1.09003 * 109.47094 * 183.38223 * 6 5 4 32 32 H 0.96995 * 120.00183 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47370 * 299.99683 * 10 9 7 34 34 H 1.08994 * 109.47547 * 60.00345 * 10 9 7 35 35 H 0.96999 * 119.99843 * 180.02562 * 14 13 11 36 36 H 1.07994 * 119.89939 * 0.40971 * 20 19 5 37 37 H 1.07996 * 119.86792 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.05927 * 180.11139 * 22 21 20 39 39 H 1.08000 * 119.95809 * 179.79240 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0776 -0.7935 -1.2085 5 7 2.2582 -2.1508 -0.6490 6 6 3.3748 -2.8457 -1.3034 7 6 3.1358 -2.8913 -2.7905 8 8 2.0854 -2.4940 -3.2484 9 7 4.0894 -3.3738 -3.6118 10 6 3.8571 -3.4177 -5.0576 11 6 5.0680 -3.9960 -5.7436 12 1 5.9246 -4.3008 -5.1607 13 6 5.0818 -4.1370 -7.1150 14 7 6.1387 -4.6412 -7.7136 15 14 3.5999 -3.6105 -8.1231 16 1 3.7495 -2.1864 -8.5166 17 1 3.5054 -4.4535 -9.3418 18 1 2.3665 -3.7729 -7.3120 19 6 2.4845 -2.0218 0.7269 20 6 3.0365 -2.9270 1.6320 21 6 3.1598 -2.5889 2.9633 22 6 2.7409 -1.3485 3.4092 23 6 2.1896 -0.4460 2.5179 24 6 2.0668 -0.7780 1.1849 25 1 -0.3633 0.4849 0.9060 26 1 -0.3633 0.5421 -0.8731 27 1 -0.3633 -1.0271 -0.0330 28 1 3.0307 -0.3825 -1.5413 29 1 1.3566 -0.8051 -2.0260 30 1 4.3035 -2.3121 -1.1009 31 1 3.4477 -3.8618 -0.9157 32 1 4.9293 -3.6920 -3.2457 33 1 2.9885 -4.0419 -5.2674 34 1 3.6771 -2.4084 -5.4275 35 1 6.1485 -4.7400 -8.6785 36 1 3.3690 -3.8958 1.2895 37 1 3.5887 -3.2941 3.6598 38 1 2.8407 -1.0865 4.4522 39 1 1.8590 0.5217 2.8653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915684285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:17 Heat of formation + Delta-G solvation = -21.159406 kcal Electronic energy + Delta-G solvation = -20605.980868 eV Core-core repulsion = 17512.475126 eV Total energy + Delta-G solvation = -3093.505742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03871 -40.34228 -37.58974 -36.15993 -34.89790 -34.41705 -31.24783 -30.66093 -30.08884 -28.37668 -26.32833 -24.10767 -23.59547 -22.12550 -21.79280 -21.18463 -19.14623 -17.89188 -17.79504 -16.95885 -16.85713 -16.64631 -16.22107 -16.03781 -15.73666 -14.90623 -14.68871 -14.62366 -14.40068 -14.27938 -14.20763 -13.86187 -13.52850 -13.23199 -13.07493 -12.93203 -12.70197 -12.43132 -12.19841 -11.95184 -11.88166 -11.68070 -11.54717 -11.17099 -10.93633 -10.58305 -9.96681 -9.70228 -8.69051 -8.41745 -6.49021 0.44978 0.50255 1.31363 1.34000 1.46256 1.62716 2.18356 2.26773 2.71028 2.93638 2.96062 3.52621 3.56801 3.81891 3.94876 4.10880 4.19001 4.24654 4.28093 4.39951 4.48541 4.63308 4.64952 4.73906 4.76521 4.85895 4.96893 4.98938 5.00424 5.11474 5.23734 5.33223 5.40738 5.47105 5.57551 5.67083 5.77674 5.92782 6.07390 6.29098 6.51725 6.78403 7.13146 7.34293 8.72990 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.003744 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.742565 B = 7476.196240 C = 8128.396126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.053 4.053 3 H 0.100 0.900 4 C 0.053 3.947 5 N -0.472 5.472 6 C 0.040 3.960 7 C 0.501 3.499 8 O -0.576 6.576 9 N -0.704 5.704 10 C 0.234 3.766 11 C -0.548 4.548 12 H 0.060 0.940 13 C 0.027 3.973 14 N -0.931 5.931 15 Si 0.938 3.062 16 H -0.264 1.264 17 H -0.273 1.273 18 H -0.261 1.261 19 C 0.075 3.925 20 C -0.151 4.151 21 C -0.096 4.096 22 C -0.146 4.146 23 C -0.085 4.085 24 C -0.148 4.148 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.409 0.591 33 H 0.012 0.988 34 H 0.013 0.987 35 H 0.273 0.727 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 8.576 23.049 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 H 0.118 0.882 4 C -0.073 4.073 5 N -0.186 5.186 6 C -0.089 4.089 7 C 0.287 3.713 8 O -0.456 6.456 9 N -0.354 5.354 10 C 0.111 3.889 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.174 4.174 14 N -0.570 5.570 15 Si 0.761 3.239 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.185 1.185 19 C -0.023 4.023 20 C -0.172 4.172 21 C -0.115 4.115 22 C -0.165 4.165 23 C -0.103 4.103 24 C -0.151 4.151 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.146 0.854 32 H 0.245 0.755 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.909 8.477 22.314 25.146 hybrid contribution 0.646 0.010 -0.959 1.156 sum -7.263 8.487 21.356 24.101 Atomic orbital electron populations 1.21644 0.92750 1.01553 1.02620 1.20917 0.97061 0.99030 0.90176 0.88177 1.23323 1.00996 0.84991 0.97953 1.60207 1.38141 1.19067 1.01203 1.22194 0.93629 1.03285 0.89779 1.20956 0.83476 0.77324 0.89543 1.90632 1.27257 1.49276 1.78444 1.45989 1.19017 1.62847 1.07580 1.19085 0.95914 0.95663 0.78284 1.21291 1.01318 1.42981 0.92953 0.92209 1.25597 0.98735 0.94201 0.98842 1.69980 1.30671 1.45463 1.10841 0.85856 0.80160 0.79189 0.78677 1.18916 1.19827 1.18544 1.19912 0.97915 0.95359 0.89148 1.20741 1.03408 0.99584 0.93447 1.21222 0.98409 0.97363 0.94457 1.21364 1.00611 0.93921 1.00611 1.20675 0.98252 1.00627 0.90738 1.20682 1.03764 0.94863 0.95803 0.90867 0.91676 0.94058 0.93090 0.89433 0.89106 0.85367 0.75514 0.96992 0.96949 0.91814 0.85285 0.83277 0.83247 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.22 71.99 0.66 -1.99 16 2 C -0.05 -1.18 3.67 -10.72 -0.04 -1.22 16 3 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 4 C 0.05 1.51 5.06 86.65 0.44 1.95 16 5 N -0.47 -13.64 4.92 -692.95 -3.41 -17.05 16 6 C 0.04 1.10 5.02 85.55 0.43 1.53 16 7 C 0.50 18.56 7.44 87.65 0.65 19.21 16 8 O -0.58 -25.67 14.32 -3.03 -0.04 -25.71 16 9 N -0.70 -27.77 5.55 -466.78 -2.59 -30.36 16 10 C 0.23 11.43 4.50 85.64 0.39 11.81 16 11 C -0.55 -30.10 9.83 25.60 0.25 -29.85 16 12 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 13 C 0.03 1.50 5.47 84.65 0.46 1.97 16 14 N -0.93 -55.50 13.96 21.44 0.30 -55.20 16 15 Si 0.94 44.03 27.47 68.60 1.88 45.91 16 16 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 19 C 0.07 1.86 5.95 38.29 0.23 2.09 16 20 C -0.15 -3.11 9.54 22.47 0.21 -2.90 16 21 C -0.10 -1.56 10.02 22.21 0.22 -1.33 16 22 C -0.15 -2.21 10.06 22.30 0.22 -1.99 16 23 C -0.08 -1.48 10.03 22.21 0.22 -1.26 16 24 C -0.15 -3.32 5.57 -19.49 -0.11 -3.42 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.43 7.87 -2.39 -0.02 1.41 16 29 H 0.09 2.91 6.64 -2.38 -0.02 2.90 16 30 H 0.09 2.13 8.13 -2.39 -0.02 2.11 16 31 H 0.13 2.96 7.48 -2.39 -0.02 2.94 16 32 H 0.41 14.00 8.32 -92.71 -0.77 13.23 16 33 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 34 H 0.01 0.63 7.57 -2.39 -0.02 0.62 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.13 2.33 7.47 -2.91 -0.02 2.31 16 37 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -68.98 321.89 0.61 -68.37 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.22 Total: 19.45 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 4.25 Total: -5.41 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.70 Total: -102.61 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.71 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -68.98 0.61 -68.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915684285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.206 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds