Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46863 * 2 1 4 4 C 1.50698 * 109.47216 * 240.00240 * 2 1 3 5 5 C 1.38384 * 119.91861 * 285.50079 * 4 2 1 6 6 C 1.38350 * 120.30004 * 179.76626 * 5 4 2 7 7 C 1.37968 * 120.15175 * 0.51487 * 6 5 4 8 8 C 1.39614 * 119.84268 * 359.74779 * 7 6 5 9 9 C 1.43203 * 120.14912 * 179.97438 * 8 7 6 10 10 N 5.95826 * 114.85662 * 277.39549 * 2 1 3 11 11 C 1.37919 * 119.92340 * 105.78222 * 4 2 1 12 12 N 1.46896 * 109.46973 * 119.99829 * 2 1 3 13 13 C 1.46905 * 111.00342 * 305.40252 * 12 2 1 14 14 C 1.46901 * 111.00178 * 181.45160 * 12 2 1 15 15 C 1.52994 * 109.47400 * 200.94024 * 14 12 2 16 16 H 1.09003 * 109.47160 * 53.89399 * 15 14 12 17 17 O 1.42902 * 109.47082 * 293.89995 * 15 14 12 18 18 C 1.50694 * 109.47342 * 173.89958 * 15 14 12 19 19 H 1.07999 * 120.00214 * 359.97438 * 18 15 14 20 20 C 1.37883 * 120.00256 * 180.02562 * 18 15 14 21 21 N 1.31508 * 119.99959 * 180.02562 * 20 18 15 22 22 Si 1.86799 * 119.99916 * 359.97438 * 20 18 15 23 23 H 1.48501 * 109.46997 * 90.00491 * 22 20 18 24 24 H 1.48500 * 109.47213 * 210.00554 * 22 20 18 25 25 H 1.48501 * 109.47172 * 330.00394 * 22 20 18 26 26 H 1.09001 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47392 * 299.99943 * 1 2 3 28 28 H 1.08999 * 109.47026 * 60.00146 * 1 2 3 29 29 H 1.07992 * 119.85358 * 0.02562 * 5 4 2 30 30 H 1.08000 * 119.92057 * 180.25768 * 6 5 4 31 31 H 1.07994 * 120.07549 * 179.71998 * 7 6 5 32 32 H 1.07998 * 120.08233 * 359.97438 * 11 4 2 33 33 H 1.09008 * 109.46602 * 56.44352 * 13 12 2 34 34 H 1.08996 * 109.47531 * 176.44124 * 13 12 2 35 35 H 1.08995 * 109.47013 * 296.44511 * 13 12 2 36 36 H 1.09004 * 109.46523 * 320.93939 * 14 12 2 37 37 H 1.09002 * 109.47237 * 80.93566 * 14 12 2 38 38 H 0.96699 * 114.00133 * 299.99605 * 17 15 14 39 39 H 0.97000 * 119.99941 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 1.9602 -2.0901 -1.3087 6 6 2.4147 -2.7500 -2.4366 7 6 2.9530 -2.0361 -3.4874 8 6 3.0338 -0.6443 -3.4127 9 6 3.5919 0.1031 -4.4993 10 7 4.0346 0.6959 -5.3613 11 6 2.5682 0.0157 -2.2735 12 7 2.0196 -0.6924 1.1994 13 6 1.4461 -0.1049 2.4176 14 6 3.4877 -0.6821 1.2509 15 6 3.9739 -1.8065 2.1675 16 1 3.5419 -2.7529 1.8422 17 8 3.5688 -1.5348 3.5107 18 6 5.4770 -1.8921 2.1038 19 1 6.0303 -1.2127 1.4723 20 6 6.1460 -2.8384 2.8508 21 7 7.4579 -2.9127 2.7955 22 14 5.1891 -4.0139 3.9425 23 1 4.8384 -5.2326 3.1698 24 1 6.0220 -4.3922 5.1123 25 1 3.9462 -3.3515 4.4133 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.5435 -2.6540 -0.4874 30 1 2.3516 -3.8266 -2.4929 31 1 3.3115 -2.5528 -4.3653 32 1 2.6277 1.0922 -2.2094 33 1 0.3580 -0.1316 2.3563 34 1 1.7751 -0.6756 3.2860 35 1 1.7793 0.9283 2.5143 36 1 3.8874 -0.8323 0.2480 37 1 3.8309 0.2770 1.6389 38 1 3.9171 -0.7059 3.8666 39 1 7.9285 -3.5782 3.3214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930764791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = 14.997633 kcal Electronic energy + Delta-G solvation = -21051.393313 eV Core-core repulsion = 17959.455458 eV Total energy + Delta-G solvation = -3091.937855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90934 -37.85280 -36.43258 -35.50320 -32.28413 -32.04581 -31.27414 -29.96831 -28.29686 -26.13608 -24.27106 -23.91863 -22.39485 -20.73763 -20.29820 -18.10623 -17.17226 -16.31113 -15.90665 -15.36395 -14.94844 -14.84760 -14.45320 -14.27727 -14.01114 -13.67752 -13.49000 -13.13942 -12.87298 -12.74940 -12.60122 -12.40083 -12.20541 -12.10477 -11.62390 -11.52585 -11.32806 -11.04559 -11.01279 -10.81504 -10.61923 -10.27625 -10.01117 -9.04094 -8.95997 -8.75373 -8.61417 -8.30286 -7.79513 -6.11967 -4.23207 0.81077 1.29299 2.61227 2.95214 3.40119 3.49522 3.75331 3.78655 3.88526 4.29741 4.54228 4.64351 4.82508 5.06037 5.21418 5.24226 5.26508 5.35151 5.45024 5.56421 5.68659 5.76693 5.82470 5.82974 5.90774 5.96478 6.06694 6.14667 6.22737 6.29539 6.38711 6.50417 6.58969 6.74106 6.82714 7.22647 7.42942 7.46576 7.53716 7.72260 8.28695 8.83395 9.01423 9.52750 10.98756 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.005687 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.122911 B = 4921.988954 C = 5836.556249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.114 3.886 3 H 0.044 0.956 4 C -0.073 4.073 5 C -0.052 4.052 6 C -0.122 4.122 7 C -0.072 4.072 8 C -0.038 4.038 9 C 0.262 3.738 10 N -0.430 5.430 11 C -0.068 4.068 12 N -0.530 5.530 13 C 0.012 3.988 14 C 0.039 3.961 15 C 0.205 3.795 16 H 0.062 0.938 17 O -0.577 6.577 18 C -0.564 4.564 19 H 0.069 0.931 20 C 0.084 3.916 21 N -0.894 5.894 22 Si 0.873 3.127 23 H -0.288 1.288 24 H -0.298 1.298 25 H -0.216 1.216 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.013 0.987 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.352 0.648 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.027 3.330 -6.524 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.006 3.994 3 H 0.062 0.938 4 C -0.074 4.074 5 C -0.071 4.071 6 C -0.140 4.140 7 C -0.092 4.092 8 C -0.042 4.042 9 C -0.053 4.053 10 N -0.105 5.105 11 C -0.089 4.089 12 N -0.255 5.255 13 C -0.136 4.136 14 C -0.088 4.088 15 C 0.147 3.853 16 H 0.080 0.920 17 O -0.383 6.383 18 C -0.602 4.602 19 H 0.087 0.913 20 C -0.120 4.120 21 N -0.531 5.531 22 Si 0.699 3.301 23 H -0.214 1.214 24 H -0.225 1.225 25 H -0.139 1.139 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.032 0.968 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.198 0.802 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.664 3.130 -7.909 16.953 hybrid contribution 0.429 0.527 0.821 1.065 sum -14.235 3.657 -7.088 16.317 Atomic orbital electron populations 1.21912 0.93695 1.02824 1.01561 1.20580 0.95346 0.94776 0.88706 0.93817 1.19681 0.98693 0.94189 0.94817 1.21365 0.94972 0.93841 0.96906 1.21148 0.99110 1.00448 0.93267 1.21137 0.97259 0.91637 0.99213 1.15885 1.04970 0.92252 0.91073 1.25784 0.93220 0.93284 0.93004 1.81225 1.09694 1.08805 1.10793 1.20998 0.96335 0.99900 0.91690 1.62159 1.09113 1.53349 1.00839 1.22774 0.99154 0.97249 0.94413 1.22883 0.84558 0.99458 1.01928 1.19737 0.93658 0.93270 0.78617 0.92032 1.86665 1.76021 1.43860 1.31785 1.21496 0.90353 1.19389 1.28913 0.91252 1.24991 0.94612 0.96681 0.95761 1.69962 1.07574 1.34904 1.40666 0.87007 0.82749 0.80230 0.80104 1.21431 1.22508 1.13853 0.91521 0.92006 0.92473 0.84274 0.84920 0.85334 0.85510 0.92329 0.88076 0.96804 0.90797 0.95332 0.80221 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.72 37.16 0.32 -1.09 16 2 C 0.11 1.40 2.27 -68.87 -0.16 1.25 16 3 H 0.04 0.54 7.94 -51.93 -0.41 0.13 16 4 C -0.07 -0.90 3.32 -104.69 -0.35 -1.24 16 5 C -0.05 -0.63 9.03 -39.49 -0.36 -0.98 16 6 C -0.12 -1.31 10.03 -39.64 -0.40 -1.71 16 7 C -0.07 -0.77 9.76 -39.17 -0.38 -1.15 16 8 C -0.04 -0.45 5.73 -106.93 -0.61 -1.07 16 9 C 0.26 3.45 15.33 -22.47 -0.34 3.11 16 10 N -0.43 -6.49 18.54 41.84 0.78 -5.72 16 11 C -0.07 -0.80 9.37 -39.17 -0.37 -1.16 16 12 N -0.53 -7.87 4.02 -236.28 -0.95 -8.82 16 13 C 0.01 0.16 8.83 60.07 0.53 0.69 16 14 C 0.04 0.71 4.52 -3.83 -0.02 0.69 16 15 C 0.20 4.47 2.53 -27.89 -0.07 4.40 16 16 H 0.06 1.42 7.57 -51.93 -0.39 1.03 16 17 O -0.58 -12.00 7.33 -35.23 -0.26 -12.25 16 18 C -0.56 -15.10 9.34 -34.44 -0.32 -15.42 16 19 H 0.07 2.03 7.99 -52.49 -0.42 1.62 16 20 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 21 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 22 Si 0.87 21.26 26.99 -169.99 -4.59 16.68 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.22 -5.08 5.31 56.52 0.30 -4.78 16 26 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.06 0.58 6.25 -51.93 -0.32 0.26 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.14 1.72 7.88 -52.49 -0.41 1.31 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.32 7.99 -52.49 -0.42 0.90 16 33 H 0.06 0.69 6.01 -51.92 -0.31 0.38 16 34 H 0.10 1.57 5.49 -51.93 -0.29 1.28 16 35 H 0.01 0.18 8.09 -51.93 -0.42 -0.24 16 36 H 0.07 1.40 6.53 -51.93 -0.34 1.06 16 37 H 0.03 0.53 7.94 -51.93 -0.41 0.12 16 38 H 0.35 6.57 9.04 45.56 0.41 6.98 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -30.82 323.99 -6.65 -37.46 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.66 Total: 5.34 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.62 Total: -11.43 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.60 Total: -40.68 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.26 Total: -12.25 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.59 Total: 16.68 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.82 -6.65 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930764791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.460 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds