Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46863 * 2 1 4 4 C 1.50698 * 109.47216 * 240.00240 * 2 1 3 5 5 C 1.38384 * 119.91861 * 285.50079 * 4 2 1 6 6 C 1.38350 * 120.30004 * 179.76626 * 5 4 2 7 7 C 1.37968 * 120.15175 * 0.51487 * 6 5 4 8 8 C 1.39614 * 119.84268 * 359.74779 * 7 6 5 9 9 C 1.43203 * 120.14912 * 179.97438 * 8 7 6 10 10 N 5.95826 * 114.85662 * 277.39549 * 2 1 3 11 11 C 1.37919 * 119.92340 * 105.78222 * 4 2 1 12 12 N 1.46896 * 109.46973 * 119.99829 * 2 1 3 13 13 C 1.46905 * 111.00342 * 305.40252 * 12 2 1 14 14 C 1.46901 * 111.00178 * 181.45160 * 12 2 1 15 15 C 1.52994 * 109.47400 * 200.94024 * 14 12 2 16 16 H 1.09003 * 109.47160 * 53.89399 * 15 14 12 17 17 O 1.42902 * 109.47082 * 293.89995 * 15 14 12 18 18 C 1.50694 * 109.47342 * 173.89958 * 15 14 12 19 19 H 1.07999 * 120.00214 * 359.97438 * 18 15 14 20 20 C 1.37883 * 120.00256 * 180.02562 * 18 15 14 21 21 N 1.31508 * 119.99959 * 180.02562 * 20 18 15 22 22 Si 1.86799 * 119.99916 * 359.97438 * 20 18 15 23 23 H 1.48501 * 109.46997 * 90.00491 * 22 20 18 24 24 H 1.48500 * 109.47213 * 210.00554 * 22 20 18 25 25 H 1.48501 * 109.47172 * 330.00394 * 22 20 18 26 26 H 1.09001 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47392 * 299.99943 * 1 2 3 28 28 H 1.08999 * 109.47026 * 60.00146 * 1 2 3 29 29 H 1.07992 * 119.85358 * 0.02562 * 5 4 2 30 30 H 1.08000 * 119.92057 * 180.25768 * 6 5 4 31 31 H 1.07994 * 120.07549 * 179.71998 * 7 6 5 32 32 H 1.07998 * 120.08233 * 359.97438 * 11 4 2 33 33 H 1.09008 * 109.46602 * 56.44352 * 13 12 2 34 34 H 1.08996 * 109.47531 * 176.44124 * 13 12 2 35 35 H 1.08995 * 109.47013 * 296.44511 * 13 12 2 36 36 H 1.09004 * 109.46523 * 320.93939 * 14 12 2 37 37 H 1.09002 * 109.47237 * 80.93566 * 14 12 2 38 38 H 0.96699 * 114.00133 * 299.99605 * 17 15 14 39 39 H 0.97000 * 119.99941 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 1.9602 -2.0901 -1.3087 6 6 2.4147 -2.7500 -2.4366 7 6 2.9530 -2.0361 -3.4874 8 6 3.0338 -0.6443 -3.4127 9 6 3.5919 0.1031 -4.4993 10 7 4.0346 0.6959 -5.3613 11 6 2.5682 0.0157 -2.2735 12 7 2.0196 -0.6924 1.1994 13 6 1.4461 -0.1049 2.4176 14 6 3.4877 -0.6821 1.2509 15 6 3.9739 -1.8065 2.1675 16 1 3.5419 -2.7529 1.8422 17 8 3.5688 -1.5348 3.5107 18 6 5.4770 -1.8921 2.1038 19 1 6.0303 -1.2127 1.4723 20 6 6.1460 -2.8384 2.8508 21 7 7.4579 -2.9127 2.7955 22 14 5.1891 -4.0139 3.9425 23 1 4.8384 -5.2326 3.1698 24 1 6.0220 -4.3922 5.1123 25 1 3.9462 -3.3515 4.4133 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.5435 -2.6540 -0.4874 30 1 2.3516 -3.8266 -2.4929 31 1 3.3115 -2.5528 -4.3653 32 1 2.6277 1.0922 -2.2094 33 1 0.3580 -0.1316 2.3563 34 1 1.7751 -0.6756 3.2860 35 1 1.7793 0.9283 2.5143 36 1 3.8874 -0.8323 0.2480 37 1 3.8309 0.2770 1.6389 38 1 3.9171 -0.7059 3.8666 39 1 7.9285 -3.5782 3.3214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930764791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = -5.213571 kcal Electronic energy + Delta-G solvation = -21052.269737 eV Core-core repulsion = 17959.455458 eV Total energy + Delta-G solvation = -3092.814278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87297 -39.10328 -37.65405 -36.88542 -34.37481 -33.13911 -32.18747 -31.23545 -29.62940 -27.50348 -25.66774 -24.92502 -23.39706 -22.18354 -21.55411 -19.44797 -18.78353 -17.25503 -16.99459 -16.69908 -16.56157 -16.24097 -15.98520 -15.39000 -15.12998 -14.98992 -14.65019 -14.43491 -14.14259 -14.05502 -13.86338 -13.59446 -13.31330 -13.11361 -12.93538 -12.84084 -12.60451 -12.36214 -12.27273 -12.14492 -12.03246 -11.76407 -11.54995 -11.00990 -10.74668 -10.00624 -9.85468 -9.64782 -9.05716 -8.29390 -6.43681 -0.12778 0.41544 1.46354 1.51661 1.56632 1.81440 1.95293 2.49686 2.79430 2.93954 3.09561 3.16739 3.72831 3.97061 4.11000 4.23053 4.33077 4.36406 4.40949 4.43578 4.53617 4.61340 4.78686 4.84060 4.88427 4.95696 5.06888 5.08771 5.14816 5.33607 5.36407 5.42421 5.48043 5.55205 5.64886 5.68794 5.94300 6.12315 6.28592 6.39357 6.40696 6.69759 7.24941 7.40779 8.85090 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.005687 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.122911 B = 4921.988954 C = 5836.556249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.115 3.885 3 H 0.045 0.955 4 C -0.084 4.084 5 C -0.061 4.061 6 C -0.123 4.123 7 C -0.068 4.068 8 C -0.049 4.049 9 C 0.282 3.718 10 N -0.468 5.468 11 C -0.070 4.070 12 N -0.532 5.532 13 C 0.013 3.987 14 C 0.056 3.944 15 C 0.216 3.784 16 H 0.056 0.944 17 O -0.575 6.575 18 C -0.562 4.562 19 H 0.030 0.970 20 C 0.028 3.972 21 N -0.944 5.944 22 Si 0.940 3.060 23 H -0.285 1.285 24 H -0.304 1.304 25 H -0.199 1.199 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.018 0.982 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.363 0.637 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 2.968 -6.212 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 H 0.063 0.937 4 C -0.085 4.085 5 C -0.080 4.080 6 C -0.140 4.140 7 C -0.089 4.089 8 C -0.052 4.052 9 C -0.032 4.032 10 N -0.144 5.144 11 C -0.091 4.091 12 N -0.256 5.256 13 C -0.134 4.134 14 C -0.072 4.072 15 C 0.158 3.842 16 H 0.074 0.926 17 O -0.381 6.381 18 C -0.600 4.600 19 H 0.048 0.952 20 C -0.171 4.171 21 N -0.584 5.584 22 Si 0.765 3.235 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.120 1.120 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.211 0.789 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.154 2.790 -7.602 18.970 hybrid contribution 1.196 0.687 0.691 1.543 sum -15.958 3.477 -6.911 17.735 Atomic orbital electron populations 1.21874 0.91550 1.03182 1.02703 1.20661 0.96930 0.94378 0.87361 0.93746 1.19738 0.99311 0.94417 0.95005 1.21482 0.95237 0.93927 0.97364 1.21407 0.98374 1.01608 0.92658 1.21402 0.96376 0.91200 0.99887 1.15977 1.05667 0.92761 0.90808 1.25942 0.92249 0.92475 0.92559 1.81241 1.11170 1.09971 1.12050 1.21111 0.95981 1.00512 0.91524 1.62053 1.06594 1.54559 1.02427 1.22751 1.00532 0.97010 0.93112 1.22469 0.87110 0.97508 1.00155 1.19460 0.90277 0.94558 0.79932 0.92617 1.86596 1.75677 1.44816 1.31044 1.21855 0.93082 1.17827 1.27244 0.95183 1.25868 0.95256 0.98590 0.97421 1.70103 1.09475 1.36342 1.42475 0.85973 0.81668 0.77997 0.77880 1.21198 1.23146 1.12023 0.91521 0.91203 0.91012 0.84545 0.82757 0.83342 0.84573 0.89897 0.89724 0.96315 0.91902 0.95980 0.78929 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.72 71.98 0.63 -1.65 16 2 C 0.11 2.56 2.27 44.17 0.10 2.66 16 3 H 0.04 1.00 7.94 -2.39 -0.02 0.98 16 4 C -0.08 -1.91 3.32 -19.91 -0.07 -1.98 16 5 C -0.06 -1.37 9.03 22.33 0.20 -1.17 16 6 C -0.12 -2.38 10.03 22.23 0.22 -2.16 16 7 C -0.07 -1.33 9.76 22.54 0.22 -1.11 16 8 C -0.05 -1.08 5.73 -21.36 -0.12 -1.21 16 9 C 0.28 7.21 15.33 88.33 1.35 8.57 16 10 N -0.47 -14.02 18.54 19.00 0.35 -13.66 16 11 C -0.07 -1.55 9.37 22.54 0.21 -1.34 16 12 N -0.53 -14.68 4.02 -901.47 -3.62 -18.30 16 13 C 0.01 0.33 8.83 127.69 1.13 1.46 16 14 C 0.06 1.98 4.52 86.30 0.39 2.37 16 15 C 0.22 9.21 2.53 29.84 0.08 9.28 16 16 H 0.06 2.48 7.57 -2.39 -0.02 2.47 16 17 O -0.57 -22.69 7.33 -148.98 -1.09 -23.78 16 18 C -0.56 -30.44 9.34 25.60 0.24 -30.20 16 19 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 20 C 0.03 1.57 5.47 84.66 0.46 2.03 16 21 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 22 Si 0.94 43.81 26.99 68.60 1.85 45.67 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.20 -8.62 5.31 99.48 0.53 -8.09 16 26 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 27 H 0.07 1.06 6.25 -2.39 -0.01 1.05 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.14 3.12 7.88 -2.91 -0.02 3.10 16 30 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.14 2.65 7.99 -2.91 -0.02 2.63 16 33 H 0.08 1.65 6.01 -2.38 -0.01 1.64 16 34 H 0.08 2.40 5.49 -2.39 -0.01 2.39 16 35 H 0.02 0.44 8.09 -2.39 -0.02 0.42 16 36 H 0.06 2.36 6.53 -2.38 -0.02 2.35 16 37 H 0.02 0.80 7.94 -2.39 -0.02 0.78 16 38 H 0.36 12.89 9.04 -74.06 -0.67 12.22 16 39 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -66.58 323.99 3.05 -63.53 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.21 Total: 18.83 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 5.05 Total: -14.45 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -2.97 Total: -89.79 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.09 Total: -23.78 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.85 Total: 45.67 kcal Total: -66.58 3.05 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930764791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.312 kcal (2) G-P(sol) polarization free energy of solvation -66.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds