Wall clock time and date at job start Mon Mar 30 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47234 * 2 1 4 4 C 1.50694 * 109.47197 * 120.00388 * 2 1 3 5 5 C 1.38386 * 119.92276 * 155.99992 * 4 2 1 6 6 C 1.38343 * 120.30555 * 179.97438 * 5 4 2 7 7 C 1.37970 * 120.15034 * 359.97438 * 6 5 4 8 8 C 1.39615 * 119.84531 * 0.02562 * 7 6 5 9 9 C 1.43196 * 120.14637 * 179.97438 * 8 7 6 10 10 N 5.95820 * 77.30367 * 106.16072 * 2 1 3 11 11 C 1.37920 * 119.92615 * 335.72348 * 4 2 1 12 12 N 1.46903 * 109.47079 * 240.00714 * 2 1 3 13 13 C 1.46898 * 110.99639 * 305.55268 * 12 2 1 14 14 C 1.46901 * 110.99961 * 69.50315 * 12 2 1 15 15 C 1.53001 * 109.46643 * 170.00392 * 14 12 2 16 16 H 1.09001 * 109.47628 * 60.00243 * 15 14 12 17 17 O 1.42900 * 109.47269 * 299.99581 * 15 14 12 18 18 C 1.50707 * 109.46853 * 180.02562 * 15 14 12 19 19 H 1.07998 * 119.99729 * 359.97438 * 18 15 14 20 20 C 1.37880 * 119.99826 * 179.72550 * 18 15 14 21 21 N 1.31508 * 120.00156 * 0.26758 * 20 18 15 22 22 Si 1.86799 * 119.99813 * 180.27706 * 20 18 15 23 23 H 1.48506 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47545 * 119.99547 * 22 20 18 25 25 H 1.48502 * 109.46959 * 239.99929 * 22 20 18 26 26 H 1.08999 * 109.47077 * 59.99127 * 1 2 3 27 27 H 1.08995 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46998 * 299.99867 * 1 2 3 29 29 H 1.07997 * 119.84784 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.92461 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.07546 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.07892 * 359.97438 * 11 4 2 33 33 H 1.09000 * 109.47061 * 191.09651 * 13 12 2 34 34 H 1.09007 * 109.47301 * 311.08986 * 13 12 2 35 35 H 1.09000 * 109.47706 * 71.08671 * 13 12 2 36 36 H 1.09000 * 109.47389 * 50.00420 * 14 12 2 37 37 H 1.09003 * 109.47119 * 289.99868 * 14 12 2 38 38 H 0.96702 * 114.00428 * 300.00435 * 17 15 14 39 39 H 0.97001 * 119.99979 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 3.2955 -1.2757 1.2337 6 6 3.7648 -1.9293 2.3591 7 6 2.9753 -2.0213 3.4868 8 6 1.7000 -1.4532 3.4903 9 6 0.8749 -1.5453 4.6571 10 7 0.2205 -1.6178 5.5828 11 6 1.2344 -0.7909 2.3524 12 7 2.0197 -0.6924 -1.1995 13 6 1.4433 -2.0397 -1.3018 14 6 1.7424 0.0921 -2.4102 15 6 2.4774 -0.5290 -3.5997 16 1 2.1345 -1.5535 -3.7442 17 8 3.8833 -0.5289 -3.3437 18 6 2.1935 0.2761 -4.8416 19 1 1.5526 1.1437 -4.7879 20 6 2.7562 -0.0919 -6.0454 21 7 3.5363 -1.1486 -6.1108 22 14 2.4105 0.9105 -7.5832 23 1 1.5090 2.0411 -7.2449 24 1 3.6870 1.4402 -8.1263 25 1 1.7599 0.0469 -8.6012 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9181 -1.2056 0.3541 30 1 4.7514 -2.3686 2.3548 31 1 3.3431 -2.5314 4.3648 32 1 0.2507 -0.3451 2.3502 33 1 1.9644 -2.5998 -2.0782 34 1 1.5520 -2.5548 -0.3473 35 1 0.3859 -1.9643 -1.5555 36 1 2.0854 1.1166 -2.2659 37 1 0.6700 0.0920 -2.6055 38 1 4.2579 0.3518 -3.2051 39 1 3.9319 -1.4077 -6.9578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930764796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:26 Heat of formation + Delta-G solvation = 11.096327 kcal Electronic energy + Delta-G solvation = -20653.362649 eV Core-core repulsion = 17561.255621 eV Total energy + Delta-G solvation = -3092.107028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.03737 -37.86123 -36.48256 -35.19313 -32.22825 -32.03059 -31.41924 -29.04325 -28.24312 -26.12443 -24.85745 -23.75640 -22.77550 -20.76988 -19.69950 -18.23244 -17.04029 -16.41710 -15.65151 -15.26364 -14.99457 -14.60645 -14.45686 -14.21923 -14.10291 -13.79682 -13.28227 -13.22318 -13.10598 -12.75655 -12.69121 -12.41078 -11.95298 -11.91184 -11.56563 -11.34274 -11.15543 -11.05483 -10.96045 -10.86148 -10.65064 -10.50083 -10.04494 -9.06613 -9.02356 -8.82240 -8.58418 -8.13221 -7.69659 -6.02286 -4.20408 0.70885 1.20043 2.49189 2.84670 3.25036 3.33758 3.36320 3.70811 3.76368 4.28279 4.45615 4.61048 4.76411 4.95691 5.20636 5.24963 5.25677 5.34171 5.37805 5.58575 5.68791 5.73724 5.82977 5.88850 5.95379 6.09700 6.11514 6.22095 6.28724 6.34932 6.47431 6.50460 6.58399 6.76662 6.79653 7.30947 7.47454 7.55127 7.76028 7.86129 8.18671 8.83675 9.44829 9.61079 11.01744 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.040889 B = 0.003612 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.621243 B = 7750.736188 C = 8166.858101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.113 3.887 3 H 0.094 0.906 4 C -0.071 4.071 5 C -0.056 4.056 6 C -0.125 4.125 7 C -0.076 4.076 8 C -0.042 4.042 9 C 0.261 3.739 10 N -0.431 5.431 11 C -0.073 4.073 12 N -0.519 5.519 13 C 0.024 3.976 14 C 0.030 3.970 15 C 0.238 3.762 16 H 0.054 0.946 17 O -0.554 6.554 18 C -0.574 4.574 19 H 0.054 0.946 20 C 0.080 3.920 21 N -0.858 5.858 22 Si 0.887 3.113 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.148 0.852 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.342 0.658 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 0.189 14.677 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.004 3.996 3 H 0.111 0.889 4 C -0.071 4.071 5 C -0.075 4.075 6 C -0.143 4.143 7 C -0.097 4.097 8 C -0.046 4.046 9 C -0.053 4.053 10 N -0.106 5.106 11 C -0.094 4.094 12 N -0.242 5.242 13 C -0.124 4.124 14 C -0.097 4.097 15 C 0.179 3.821 16 H 0.072 0.928 17 O -0.356 6.356 18 C -0.613 4.613 19 H 0.072 0.928 20 C -0.126 4.126 21 N -0.493 5.493 22 Si 0.715 3.285 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.166 0.834 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.185 0.815 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.946 -0.757 15.964 16.100 hybrid contribution -0.915 1.249 -1.312 2.029 sum -2.861 0.492 14.652 14.937 Atomic orbital electron populations 1.22561 0.97338 1.02558 1.02263 1.20640 0.92489 0.97749 0.88676 0.88859 1.19839 0.94336 0.98518 0.94430 1.21572 0.95090 0.92610 0.98179 1.21181 1.00252 1.00155 0.92741 1.21138 0.92022 0.97665 0.98890 1.15918 0.93610 1.05709 0.89320 1.25817 0.93216 0.93346 0.92965 1.81236 1.09333 1.09074 1.10968 1.21146 0.99892 0.97164 0.91213 1.62256 1.57551 1.02651 1.01725 1.22393 0.97162 0.90999 1.01817 1.23134 0.98821 0.97068 0.90658 1.19312 0.78894 0.96259 0.87593 0.92791 1.86556 1.24223 1.31006 1.93798 1.21691 1.31889 1.13795 0.93892 0.92758 1.25011 0.94237 0.94621 0.98733 1.70083 1.29712 1.24144 1.25390 0.86649 0.78149 0.80364 0.83380 1.19778 1.20867 1.20955 0.91765 0.91953 0.92302 0.83396 0.84979 0.85496 0.85085 0.90536 0.92455 0.95947 0.91881 0.95200 0.81489 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 7.59 37.16 0.28 -1.85 16 2 C 0.11 1.40 2.72 -68.87 -0.19 1.22 16 3 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 4 C -0.07 -0.78 4.41 -104.69 -0.46 -1.24 16 5 C -0.06 -0.61 8.72 -39.49 -0.34 -0.95 16 6 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 7 C -0.08 -0.67 9.76 -39.17 -0.38 -1.05 16 8 C -0.04 -0.42 5.73 -106.93 -0.61 -1.03 16 9 C 0.26 2.97 15.33 -22.48 -0.34 2.63 16 10 N -0.43 -5.78 18.54 41.84 0.78 -5.01 16 11 C -0.07 -0.74 8.84 -39.17 -0.35 -1.08 16 12 N -0.52 -8.05 3.72 -236.28 -0.88 -8.93 16 13 C 0.02 0.37 8.01 60.06 0.48 0.86 16 14 C 0.03 0.57 4.12 -3.82 -0.02 0.55 16 15 C 0.24 5.62 2.70 -27.88 -0.08 5.55 16 16 H 0.05 1.42 6.71 -51.93 -0.35 1.07 16 17 O -0.55 -13.49 12.58 -35.23 -0.44 -13.93 16 18 C -0.57 -15.09 8.76 -34.44 -0.30 -15.39 16 19 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 20 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 21 N -0.86 -24.66 12.83 55.43 0.71 -23.95 16 22 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.79 6.89 -51.93 -0.36 0.43 16 27 H 0.06 0.72 6.58 -51.93 -0.34 0.38 16 28 H 0.06 0.55 6.58 -51.93 -0.34 0.21 16 29 H 0.15 1.83 7.58 -52.49 -0.40 1.43 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.19 6.03 -52.49 -0.32 0.87 16 33 H 0.08 1.35 6.83 -51.93 -0.35 1.00 16 34 H 0.06 0.78 6.63 -51.92 -0.34 0.43 16 35 H 0.02 0.33 6.82 -51.93 -0.35 -0.02 16 36 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 37 H 0.03 0.56 6.97 -51.93 -0.36 0.20 16 38 H 0.34 7.47 9.04 45.56 0.41 7.88 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -29.61 325.35 -7.07 -36.69 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.32 Total: 5.90 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.80 Total: -11.26 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.61 Total: -37.88 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.44 Total: -13.93 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.61 -7.07 -36.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930764796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.784 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds