Wall clock time and date at job start Mon Mar 30 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47234 * 2 1 4 4 C 1.50694 * 109.47197 * 120.00388 * 2 1 3 5 5 C 1.38386 * 119.92276 * 155.99992 * 4 2 1 6 6 C 1.38343 * 120.30555 * 179.97438 * 5 4 2 7 7 C 1.37970 * 120.15034 * 359.97438 * 6 5 4 8 8 C 1.39615 * 119.84531 * 0.02562 * 7 6 5 9 9 C 1.43196 * 120.14637 * 179.97438 * 8 7 6 10 10 N 5.95820 * 77.30367 * 106.16072 * 2 1 3 11 11 C 1.37920 * 119.92615 * 335.72348 * 4 2 1 12 12 N 1.46903 * 109.47079 * 240.00714 * 2 1 3 13 13 C 1.46898 * 110.99639 * 305.55268 * 12 2 1 14 14 C 1.46901 * 110.99961 * 69.50315 * 12 2 1 15 15 C 1.53001 * 109.46643 * 170.00392 * 14 12 2 16 16 H 1.09001 * 109.47628 * 60.00243 * 15 14 12 17 17 O 1.42900 * 109.47269 * 299.99581 * 15 14 12 18 18 C 1.50707 * 109.46853 * 180.02562 * 15 14 12 19 19 H 1.07998 * 119.99729 * 359.97438 * 18 15 14 20 20 C 1.37880 * 119.99826 * 179.72550 * 18 15 14 21 21 N 1.31508 * 120.00156 * 0.26758 * 20 18 15 22 22 Si 1.86799 * 119.99813 * 180.27706 * 20 18 15 23 23 H 1.48506 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47545 * 119.99547 * 22 20 18 25 25 H 1.48502 * 109.46959 * 239.99929 * 22 20 18 26 26 H 1.08999 * 109.47077 * 59.99127 * 1 2 3 27 27 H 1.08995 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46998 * 299.99867 * 1 2 3 29 29 H 1.07997 * 119.84784 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.92461 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.07546 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.07892 * 359.97438 * 11 4 2 33 33 H 1.09000 * 109.47061 * 191.09651 * 13 12 2 34 34 H 1.09007 * 109.47301 * 311.08986 * 13 12 2 35 35 H 1.09000 * 109.47706 * 71.08671 * 13 12 2 36 36 H 1.09000 * 109.47389 * 50.00420 * 14 12 2 37 37 H 1.09003 * 109.47119 * 289.99868 * 14 12 2 38 38 H 0.96702 * 114.00428 * 300.00435 * 17 15 14 39 39 H 0.97001 * 119.99979 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 3.2955 -1.2757 1.2337 6 6 3.7648 -1.9293 2.3591 7 6 2.9753 -2.0213 3.4868 8 6 1.7000 -1.4532 3.4903 9 6 0.8749 -1.5453 4.6571 10 7 0.2205 -1.6178 5.5828 11 6 1.2344 -0.7909 2.3524 12 7 2.0197 -0.6924 -1.1995 13 6 1.4433 -2.0397 -1.3018 14 6 1.7424 0.0921 -2.4102 15 6 2.4774 -0.5290 -3.5997 16 1 2.1345 -1.5535 -3.7442 17 8 3.8833 -0.5289 -3.3437 18 6 2.1935 0.2761 -4.8416 19 1 1.5526 1.1437 -4.7879 20 6 2.7562 -0.0919 -6.0454 21 7 3.5363 -1.1486 -6.1108 22 14 2.4105 0.9105 -7.5832 23 1 1.5090 2.0411 -7.2449 24 1 3.6870 1.4402 -8.1263 25 1 1.7599 0.0469 -8.6012 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9181 -1.2056 0.3541 30 1 4.7514 -2.3686 2.3548 31 1 3.3431 -2.5314 4.3648 32 1 0.2507 -0.3451 2.3502 33 1 1.9644 -2.5998 -2.0782 34 1 1.5520 -2.5548 -0.3473 35 1 0.3859 -1.9643 -1.5555 36 1 2.0854 1.1166 -2.2659 37 1 0.6700 0.0920 -2.6055 38 1 4.2579 0.3518 -3.2051 39 1 3.9319 -1.4077 -6.9578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930764796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:26 Heat of formation + Delta-G solvation = -7.946888 kcal Electronic energy + Delta-G solvation = -20654.188425 eV Core-core repulsion = 17561.255621 eV Total energy + Delta-G solvation = -3092.932804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93851 -39.06316 -37.56017 -36.79074 -34.16347 -33.25165 -32.24437 -30.21573 -29.67883 -27.57848 -26.27477 -24.58591 -24.05837 -22.05447 -20.97374 -19.22924 -18.88036 -17.24552 -16.76227 -16.59952 -16.46008 -16.21751 -15.93845 -15.37433 -15.03843 -14.87681 -14.54003 -14.42412 -14.33295 -14.00310 -13.87711 -13.51594 -13.14758 -12.92080 -12.87190 -12.81399 -12.75206 -12.51377 -12.29585 -12.14084 -12.05569 -11.83546 -11.61859 -10.92435 -10.64616 -10.02235 -9.83293 -9.63785 -9.00685 -8.08658 -6.33385 -0.10286 0.43991 1.41694 1.43961 1.54853 1.60779 1.98674 2.41589 2.83364 2.95183 3.17171 3.20965 3.74650 4.00397 4.17684 4.26104 4.34255 4.40602 4.44804 4.48273 4.52752 4.63933 4.71875 4.79155 4.84407 4.91826 4.98243 5.11227 5.16157 5.18926 5.29199 5.38158 5.54019 5.67015 5.70866 5.85306 5.96751 6.08094 6.28500 6.38543 6.44707 6.81037 7.40979 7.72209 8.95536 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.040889 B = 0.003612 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.621243 B = 7750.736188 C = 8166.858101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.115 3.885 3 H 0.096 0.904 4 C -0.079 4.079 5 C -0.065 4.065 6 C -0.120 4.120 7 C -0.065 4.065 8 C -0.047 4.047 9 C 0.283 3.717 10 N -0.469 5.469 11 C -0.067 4.067 12 N -0.524 5.524 13 C 0.033 3.967 14 C 0.050 3.950 15 C 0.238 3.762 16 H 0.019 0.981 17 O -0.568 6.568 18 C -0.585 4.585 19 H 0.058 0.942 20 C 0.027 3.973 21 N -0.898 5.898 22 Si 0.955 3.045 23 H -0.264 1.264 24 H -0.280 1.280 25 H -0.282 1.282 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.352 0.648 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 0.952 15.866 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.007 3.993 3 H 0.114 0.886 4 C -0.080 4.080 5 C -0.084 4.084 6 C -0.138 4.138 7 C -0.085 4.085 8 C -0.050 4.050 9 C -0.031 4.031 10 N -0.145 5.145 11 C -0.088 4.088 12 N -0.247 5.247 13 C -0.115 4.115 14 C -0.078 4.078 15 C 0.180 3.820 16 H 0.037 0.963 17 O -0.371 6.371 18 C -0.624 4.624 19 H 0.076 0.924 20 C -0.176 4.176 21 N -0.535 5.535 22 Si 0.780 3.220 23 H -0.188 1.188 24 H -0.206 1.206 25 H -0.208 1.208 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.148 0.852 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.196 0.804 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.222 0.021 17.170 17.313 hybrid contribution -0.785 0.982 -1.623 2.053 sum -3.007 1.004 15.547 15.867 Atomic orbital electron populations 1.22514 0.96254 1.02629 1.02866 1.20649 0.93337 0.97676 0.87618 0.88628 1.19653 0.94706 0.99470 0.94179 1.21526 0.95001 0.93473 0.98424 1.21365 1.01137 0.99367 0.91932 1.21396 0.91184 0.96501 0.99454 1.15954 0.93996 1.06314 0.88742 1.25909 0.92433 0.92177 0.92569 1.81266 1.10535 1.10519 1.12216 1.21167 1.00105 0.96803 0.90717 1.62111 1.58311 1.02571 1.01701 1.22271 0.96684 0.90826 1.01744 1.22683 0.97722 0.97131 0.90226 1.19151 0.79102 0.94444 0.89300 0.96273 1.86501 1.24790 1.31940 1.93917 1.22115 1.31337 1.13829 0.95090 0.92417 1.25839 0.94104 0.95613 1.02002 1.70218 1.31199 1.25971 1.26153 0.85581 0.78038 0.78948 0.79395 1.18775 1.20594 1.20823 0.92923 0.92133 0.89929 0.85174 0.82879 0.83151 0.84014 0.93721 0.90444 0.95723 0.91174 0.95405 0.80381 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.83 7.59 71.98 0.55 -3.28 16 2 C 0.12 2.69 2.72 44.17 0.12 2.81 16 3 H 0.10 2.20 7.94 -2.39 -0.02 2.18 16 4 C -0.08 -1.61 4.41 -19.91 -0.09 -1.70 16 5 C -0.07 -1.32 8.72 22.33 0.19 -1.13 16 6 C -0.12 -1.85 10.03 22.23 0.22 -1.62 16 7 C -0.06 -0.93 9.76 22.54 0.22 -0.71 16 8 C -0.05 -0.80 5.73 -21.36 -0.12 -0.92 16 9 C 0.28 5.83 15.33 88.33 1.35 7.18 16 10 N -0.47 -11.91 18.54 19.00 0.35 -11.55 16 11 C -0.07 -1.18 8.84 22.54 0.20 -0.98 16 12 N -0.52 -16.10 3.72 -901.45 -3.35 -19.46 16 13 C 0.03 1.01 8.01 127.69 1.02 2.04 16 14 C 0.05 1.87 4.12 86.30 0.36 2.22 16 15 C 0.24 11.54 2.70 29.85 0.08 11.62 16 16 H 0.02 1.07 6.71 -2.39 -0.02 1.05 16 17 O -0.57 -28.27 12.58 -148.98 -1.87 -30.15 16 18 C -0.59 -31.00 8.76 25.60 0.22 -30.78 16 19 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 20 C 0.03 1.46 5.40 84.66 0.46 1.92 16 21 N -0.90 -52.69 12.83 21.45 0.28 -52.41 16 22 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H 0.05 1.22 6.89 -2.39 -0.02 1.20 16 27 H 0.06 1.28 6.58 -2.39 -0.02 1.27 16 28 H 0.08 1.32 6.58 -2.39 -0.02 1.31 16 29 H 0.13 3.15 7.58 -2.91 -0.02 3.13 16 30 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.14 2.15 6.03 -2.91 -0.02 2.14 16 33 H 0.04 1.65 6.83 -2.39 -0.02 1.63 16 34 H 0.08 2.03 6.63 -2.38 -0.02 2.02 16 35 H 0.02 0.73 6.82 -2.39 -0.02 0.72 16 36 H 0.07 2.49 7.94 -2.39 -0.02 2.47 16 37 H 0.03 1.04 6.97 -2.39 -0.02 1.02 16 38 H 0.35 15.57 9.04 -74.06 -0.67 14.90 16 39 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -64.03 325.35 2.62 -61.41 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.41 Total: 21.03 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 4.79 Total: -13.33 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -2.72 Total: -83.42 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.87 Total: -30.15 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -64.03 2.62 -61.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930764796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.466 kcal (2) G-P(sol) polarization free energy of solvation -64.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds