Wall clock time and date at job start Mon Mar 30 2020 01:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99961 * 2 1 4 4 O 1.21282 * 119.99979 * 4.86700 * 3 2 1 5 5 C 1.50690 * 119.99954 * 184.85897 * 3 2 1 6 6 C 1.52997 * 109.47093 * 168.71001 * 5 3 2 7 7 C 1.53001 * 109.47332 * 288.71273 * 5 3 2 8 8 F 1.39903 * 109.46996 * 48.71115 * 5 3 2 9 9 C 1.46498 * 119.99935 * 179.97438 * 2 1 3 10 10 H 1.08997 * 110.78105 * 182.21904 * 9 2 1 11 11 C 1.54324 * 110.72146 * 305.45912 * 9 2 1 12 12 N 1.47027 * 107.26889 * 140.55501 * 11 9 2 13 13 C 1.36934 * 125.65102 * 181.04176 * 12 11 9 14 14 H 1.07993 * 120.00207 * 185.56337 * 13 12 11 15 15 C 1.38821 * 119.99628 * 5.55724 * 13 12 11 16 16 N 1.31619 * 119.99700 * 6.57133 * 15 13 12 17 17 Si 1.86798 * 119.99923 * 186.57165 * 15 13 12 18 18 H 1.48501 * 109.47086 * 84.99433 * 17 15 13 19 19 H 1.48500 * 109.47271 * 204.99425 * 17 15 13 20 20 H 1.48505 * 109.47062 * 324.99724 * 17 15 13 21 21 C 1.47430 * 108.70205 * 1.05736 * 12 11 9 22 22 C 1.54900 * 104.83370 * 335.87254 * 21 12 11 23 23 H 1.09001 * 111.04110 * 278.91861 * 22 21 12 24 24 O 1.42905 * 111.00402 * 155.08005 * 22 21 12 25 25 H 1.09001 * 109.47025 * 275.20029 * 1 2 3 26 26 H 1.09006 * 109.47312 * 35.19521 * 1 2 3 27 27 H 1.08997 * 109.47637 * 155.19613 * 1 2 3 28 28 H 1.08995 * 109.47405 * 60.00152 * 6 5 3 29 29 H 1.09004 * 109.47233 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.47537 * 300.00018 * 6 5 3 31 31 H 1.08987 * 109.47391 * 65.67126 * 7 5 3 32 32 H 1.09008 * 109.47065 * 185.67145 * 7 5 3 33 33 H 1.08996 * 109.47146 * 305.66334 * 7 5 3 34 34 H 1.08994 * 109.88058 * 259.97155 * 11 9 2 35 35 H 1.08999 * 109.87990 * 21.14176 * 11 9 2 36 36 H 0.97001 * 119.99674 * 179.97438 * 16 15 13 37 37 H 1.08996 * 110.36492 * 217.02604 * 21 12 11 38 38 H 1.09004 * 110.36140 * 94.71191 * 21 12 11 39 39 H 0.96705 * 113.99399 * 67.80616 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5357 2.2156 0.0891 5 6 3.6417 1.1695 -0.1105 6 6 4.1318 2.5956 -0.3694 7 6 4.2499 0.6501 1.1938 8 9 4.0327 0.3427 -1.1692 9 6 2.1975 -1.2687 0.0006 10 1 3.2727 -1.0945 0.0399 11 6 1.7453 -2.1598 1.1767 12 7 1.6880 -3.5423 0.6799 13 6 1.3097 -4.6376 1.4095 14 1 1.3863 -5.6254 0.9799 15 6 0.8277 -4.4780 2.7016 16 7 0.6122 -3.2706 3.1791 17 14 0.4851 -5.9769 3.7624 18 1 1.7383 -6.4043 4.4348 19 1 -0.5347 -5.6360 4.7865 20 1 -0.0205 -7.0822 2.9090 21 6 2.1056 -3.5543 -0.7340 22 6 1.8243 -2.1186 -1.2428 23 1 0.7725 -1.9936 -1.5000 24 8 2.6624 -1.7956 -2.3543 25 1 -0.3633 0.0931 1.0234 26 1 -0.3634 0.8398 -0.5923 27 1 -0.3634 -0.9328 -0.4311 28 1 3.8272 3.2398 0.4553 29 1 5.2189 2.5972 -0.4498 30 1 3.6986 2.9657 -1.2987 31 1 3.9826 -0.3980 1.3272 32 1 5.3350 0.7459 1.1522 33 1 3.8656 1.2326 2.0311 34 1 2.4639 -2.0887 1.9931 35 1 0.7589 -1.8480 1.5200 36 1 0.2751 -3.1591 4.0818 37 1 1.5172 -4.2786 -1.2972 38 1 3.1683 -3.7837 -0.8137 39 1 2.4665 -2.3017 -3.1547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047275935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:15 Heat of formation + Delta-G solvation = -113.347827 kcal Electronic energy + Delta-G solvation = -23370.026417 eV Core-core repulsion = 19841.753861 eV Total energy + Delta-G solvation = -3528.272556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.93719 -41.26950 -39.60791 -36.73270 -36.24591 -34.71598 -33.71015 -30.44049 -29.13615 -28.62800 -28.14214 -26.32206 -24.01987 -22.35523 -21.97692 -20.30314 -19.12893 -18.90446 -17.87702 -17.62963 -17.02133 -16.60454 -16.13412 -16.00971 -15.72997 -15.53028 -14.98633 -14.81992 -14.34513 -14.11477 -13.86809 -13.66528 -13.44754 -13.33992 -13.21663 -13.07076 -13.04143 -12.96956 -12.84893 -12.68002 -12.47084 -12.11655 -12.03850 -11.84935 -11.50904 -10.98022 -10.80624 -10.75795 -9.76900 -8.94754 -7.85253 -5.25172 1.25725 1.48613 1.50026 1.57835 1.76399 2.48186 2.97749 3.12827 3.34133 3.43604 3.57232 3.66939 3.71719 3.86088 3.94792 4.04540 4.31009 4.37004 4.51175 4.54297 4.55815 4.61476 4.69709 4.79326 4.87145 4.94637 5.03839 5.09188 5.11969 5.29658 5.30963 5.48171 5.67606 6.14112 6.20186 6.83039 6.92629 7.04745 7.70938 8.33757 9.22051 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.006083 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.642399 B = 4602.102100 C = 4926.516194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.587 5.587 3 C 0.496 3.504 4 O -0.559 6.559 5 C 0.099 3.901 6 C -0.149 4.149 7 C -0.179 4.179 8 F -0.188 7.188 9 C 0.114 3.886 10 H 0.120 0.880 11 C 0.179 3.821 12 N -0.619 5.619 13 C -0.242 4.242 14 H 0.087 0.913 15 C -0.059 4.059 16 N -0.946 5.946 17 Si 0.977 3.023 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.268 1.268 21 C 0.105 3.895 22 C 0.094 3.906 23 H 0.071 0.929 24 O -0.555 6.555 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.006 0.994 35 H 0.050 0.950 36 H 0.248 0.752 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 6.625 -8.674 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.316 5.316 3 C 0.283 3.717 4 O -0.439 6.439 5 C 0.077 3.923 6 C -0.206 4.206 7 C -0.236 4.236 8 F -0.169 7.169 9 C 0.010 3.990 10 H 0.137 0.863 11 C 0.053 3.947 12 N -0.347 5.347 13 C -0.371 4.371 14 H 0.105 0.895 15 C -0.253 4.253 16 N -0.594 5.594 17 Si 0.805 3.195 18 H -0.214 1.214 19 H -0.223 1.223 20 H -0.193 1.193 21 C -0.021 4.021 22 C 0.033 3.967 23 H 0.089 0.911 24 O -0.361 6.361 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.653 7.506 -8.056 12.377 hybrid contribution -0.743 -1.371 0.520 1.644 sum 4.911 6.135 -7.536 10.887 Atomic orbital electron populations 1.21625 0.78699 1.03034 1.01998 1.47799 1.07535 1.05704 1.70600 1.21370 0.91032 0.83181 0.76143 1.90648 1.70418 1.31585 1.51205 1.21266 0.89823 0.93620 0.87549 1.22150 1.03323 0.91123 1.04036 1.22609 1.04166 1.02263 0.94558 1.92961 1.91655 1.73679 1.58566 1.22769 0.98052 0.82908 0.95287 0.86265 1.21237 0.99363 0.83066 0.90993 1.44481 1.78693 1.03800 1.07728 1.19419 1.35389 0.86596 0.95700 0.89523 1.25609 1.01300 0.99372 0.99014 1.70109 1.51495 1.21285 1.16559 0.85123 0.77041 0.78938 0.78372 1.21421 1.22342 1.19290 1.22375 0.98300 0.95968 0.85436 1.23087 0.93724 0.93409 0.86475 0.91107 1.86545 1.60272 1.66668 1.22628 0.93149 0.90307 0.90310 0.89632 0.88041 0.91644 0.91935 0.87201 0.89645 0.97610 0.93201 0.94312 0.92288 0.94587 0.75679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.02 8.91 127.77 1.14 4.16 16 2 N -0.59 -21.15 2.89 -815.96 -2.35 -23.50 16 3 C 0.50 17.43 6.73 87.65 0.59 18.02 16 4 O -0.56 -21.65 15.70 -3.04 -0.05 -21.70 16 5 C 0.10 2.85 1.20 -11.54 -0.01 2.83 16 6 C -0.15 -3.38 8.29 71.98 0.60 -2.78 16 7 C -0.18 -4.64 8.57 71.98 0.62 -4.02 16 8 F -0.19 -5.90 13.81 44.97 0.62 -5.28 16 9 C 0.11 4.27 1.76 46.18 0.08 4.35 16 10 H 0.12 4.40 3.50 -2.39 -0.01 4.39 16 11 C 0.18 8.42 5.04 86.73 0.44 8.85 16 12 N -0.62 -30.00 3.39 -691.99 -2.35 -32.35 16 13 C -0.24 -12.86 10.27 84.04 0.86 -12.00 16 14 H 0.09 4.37 7.84 -2.91 -0.02 4.34 16 15 C -0.06 -3.22 5.46 84.86 0.46 -2.76 16 16 N -0.95 -54.35 10.44 21.65 0.23 -54.12 16 17 Si 0.98 44.02 29.56 68.60 2.03 46.04 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 C 0.11 3.99 6.97 86.85 0.61 4.60 16 22 C 0.09 3.16 3.95 31.98 0.13 3.28 16 23 H 0.07 2.33 6.39 -2.39 -0.02 2.31 16 24 O -0.55 -15.92 12.60 -148.98 -1.88 -17.79 16 25 H 0.05 1.83 8.05 -2.39 -0.02 1.81 16 26 H 0.08 2.48 7.66 -2.38 -0.02 2.46 16 27 H 0.08 2.60 6.39 -2.39 -0.02 2.58 16 28 H 0.08 1.89 7.98 -2.39 -0.02 1.87 16 29 H 0.10 1.71 8.14 -2.38 -0.02 1.70 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.93 5.46 -2.39 -0.01 1.91 16 32 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.01 0.30 7.83 -2.39 -0.02 0.28 16 35 H 0.05 2.61 5.65 -2.39 -0.01 2.60 16 36 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.39 7.35 9.12 -74.05 -0.68 6.67 16 Total: -1.00 -66.66 309.90 2.15 -64.52 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.39 Total: 19.64 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 5.50 Total: 24.55 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -4.48 Total: -109.97 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.93 Total: -39.49 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.62 Total: -5.28 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.66 2.15 -64.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047275935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.832 kcal (2) G-P(sol) polarization free energy of solvation -66.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds