Wall clock time and date at job start Mon Mar 30 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.78229 * 2 1 4 4 C 1.54368 * 110.75931 * 123.24436 * 2 1 3 5 5 N 1.47021 * 107.29146 * 140.50781 * 4 2 1 6 6 C 1.34774 * 125.65302 * 181.13095 * 5 4 2 7 7 O 1.21549 * 120.00236 * 174.33219 * 6 5 4 8 8 C 1.47847 * 119.99964 * 354.32981 * 6 5 4 9 9 C 1.39588 * 120.14050 * 7.00362 * 8 6 5 10 10 C 1.37954 * 119.84733 * 179.74491 * 9 8 6 11 11 C 1.38360 * 120.14803 * 0.53366 * 10 9 8 12 12 C 1.38362 * 120.29229 * 359.74101 * 11 10 9 13 13 C 1.37954 * 120.14288 * 359.97438 * 12 11 10 14 14 C 1.47429 * 108.70369 * 1.09285 * 5 4 2 15 15 C 1.54914 * 104.83155 * 335.87472 * 14 5 4 16 16 H 1.09001 * 111.00113 * 278.89902 * 15 14 5 17 17 N 1.46502 * 111.00544 * 155.08320 * 15 14 5 18 18 C 1.36932 * 120.00013 * 89.58306 * 17 15 14 19 19 H 1.08001 * 120.00196 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99779 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00278 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99939 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47045 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.46755 * 59.99883 * 22 20 18 25 25 H 1.48497 * 109.47047 * 300.00134 * 22 20 18 26 26 H 1.09000 * 109.47032 * 183.23482 * 1 2 3 27 27 H 1.08991 * 109.47319 * 303.23657 * 1 2 3 28 28 H 1.09000 * 109.47024 * 63.24164 * 1 2 3 29 29 H 1.09004 * 109.84454 * 21.10160 * 4 2 1 30 30 H 1.09003 * 110.03003 * 260.01763 * 4 2 1 31 31 H 1.07993 * 120.07109 * 359.97438 * 9 8 6 32 32 H 1.08007 * 119.92248 * 180.26780 * 10 9 8 33 33 H 1.07995 * 119.85180 * 179.75951 * 11 10 9 34 34 H 1.08001 * 119.92675 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.07103 * 180.02562 * 13 12 11 36 36 H 1.08996 * 110.37116 * 217.03581 * 14 5 4 37 37 H 1.09000 * 110.45784 * 94.75745 * 14 5 4 38 38 H 0.96999 * 119.99756 * 269.57666 * 17 15 14 39 39 H 0.97005 * 119.99824 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0771 -0.7913 1.2072 5 7 3.2450 -1.5515 0.7384 6 6 3.9918 -2.3859 1.4883 7 8 4.8742 -3.0427 0.9711 8 6 3.7379 -2.5023 2.9402 9 6 2.6362 -1.8642 3.5124 10 6 2.4020 -1.9812 4.8669 11 6 3.2624 -2.7199 5.6596 12 6 4.3595 -3.3502 5.0996 13 6 4.6018 -3.2460 3.7455 14 6 3.4633 -1.2506 -0.6882 15 6 2.0790 -0.7954 -1.2139 16 1 1.4448 -1.6531 -1.4379 17 7 2.2215 0.0697 -2.3876 18 6 2.2521 -0.4781 -3.6422 19 1 2.1716 -1.5479 -3.7665 20 6 2.3876 0.3415 -4.7542 21 7 2.4862 1.6452 -4.6028 22 14 2.4301 -0.4058 -6.4657 23 1 2.5802 0.6742 -7.4739 24 1 1.1654 -1.1431 -6.7154 25 1 3.5777 -1.3425 -6.5685 26 1 -0.3633 -1.0260 0.0580 27 1 -0.3633 0.5632 0.8595 28 1 -0.3633 0.4627 -0.9176 29 1 1.3138 -1.4756 1.5778 30 1 2.3754 -0.1047 1.9995 31 1 1.9666 -1.2833 2.8956 32 1 1.5475 -1.4916 5.3102 33 1 3.0767 -2.8052 6.7200 34 1 5.0271 -3.9257 5.7238 35 1 5.4583 -3.7388 3.3095 36 1 3.7952 -2.1435 -1.2178 37 1 4.1940 -0.4497 -0.8012 38 1 2.2940 1.0305 -2.2760 39 1 2.4645 2.0333 -3.7140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054341906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:02 Heat of formation + Delta-G solvation = 5.542858 kcal Electronic energy + Delta-G solvation = -20854.108261 eV Core-core repulsion = 17761.760416 eV Total energy + Delta-G solvation = -3092.347845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72009 -39.69064 -38.82570 -36.41086 -34.13389 -32.74230 -32.06562 -31.87404 -29.05746 -27.72468 -26.00264 -24.66025 -23.50774 -22.79516 -21.52063 -20.99175 -19.50507 -18.46919 -17.71738 -17.23516 -16.80062 -16.50654 -15.97183 -15.59737 -15.48246 -15.08189 -14.83124 -14.77963 -14.43655 -14.13490 -14.09891 -13.55214 -13.35107 -13.22412 -12.77963 -12.64293 -12.49024 -12.31638 -12.20001 -11.90975 -11.71688 -11.59614 -11.19042 -11.09845 -10.92202 -10.06646 -9.95145 -9.75161 -9.19861 -8.42610 -5.38643 -0.15663 0.41512 1.57510 1.66396 1.74140 1.79814 1.83431 2.68051 2.87406 3.28021 3.35634 3.41110 3.69369 3.82778 3.96924 4.01041 4.07493 4.17119 4.20941 4.30821 4.41417 4.49086 4.49788 4.53864 4.75408 4.79485 4.82544 4.95838 5.03237 5.06504 5.12224 5.24724 5.38423 5.41768 5.43987 5.50435 5.57504 5.96639 6.38390 6.47439 6.94673 7.03502 7.92585 8.02566 9.08969 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.032900 B = 0.003989 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.850924 B = 7017.872778 C = 7642.828536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 H 0.083 0.917 4 C 0.100 3.900 5 N -0.607 5.607 6 C 0.558 3.442 7 O -0.594 6.594 8 C -0.153 4.153 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.090 4.090 12 C -0.130 4.130 13 C -0.085 4.085 14 C 0.091 3.909 15 C 0.177 3.823 16 H 0.060 0.940 17 N -0.730 5.730 18 C -0.337 4.337 19 H 0.063 0.937 20 C -0.095 4.095 21 N -0.971 5.971 22 Si 1.124 2.876 23 H -0.291 1.291 24 H -0.275 1.275 25 H -0.284 1.284 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.116 0.884 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.365 0.635 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -5.876 23.936 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 H 0.101 0.899 4 C -0.021 4.021 5 N -0.339 5.339 6 C 0.350 3.650 7 O -0.477 6.477 8 C -0.156 4.156 9 C -0.143 4.143 10 C -0.142 4.142 11 C -0.108 4.108 12 C -0.148 4.148 13 C -0.104 4.104 14 C -0.036 4.036 15 C 0.066 3.934 16 H 0.078 0.922 17 N -0.371 5.371 18 C -0.469 4.469 19 H 0.081 0.919 20 C -0.287 4.287 21 N -0.618 5.618 22 Si 0.949 3.051 23 H -0.217 1.217 24 H -0.201 1.201 25 H -0.210 1.210 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.191 0.809 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.134 0.866 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.198 0.802 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.976 -6.149 22.024 23.209 hybrid contribution 0.645 -0.106 0.959 1.161 sum -3.331 -6.254 22.983 24.050 Atomic orbital electron populations 1.21651 0.91723 1.02763 1.02557 1.22529 0.98119 0.99215 0.92740 0.89864 1.22900 0.87040 0.95153 0.97030 1.48383 1.30607 1.43863 1.11017 1.18762 0.80497 0.78175 0.87573 1.90718 1.35260 1.46778 1.74909 1.19820 1.00348 1.04647 0.90810 1.22981 0.96146 0.97557 0.97584 1.21616 1.00780 0.99166 0.92672 1.21873 0.92989 0.94175 1.01774 1.21439 0.99182 1.00656 0.93516 1.21355 0.98109 0.96194 0.94714 1.23004 1.01209 0.98954 0.80399 1.21452 0.91788 0.93514 0.86620 0.92222 1.42360 1.88195 1.04850 1.01694 1.20335 1.46806 0.93534 0.86199 0.91914 1.27099 1.00029 0.95243 1.06375 1.70996 1.55435 1.11336 1.24004 0.82673 0.77084 0.74036 0.71322 1.21676 1.20091 1.21016 0.91751 0.89215 0.93957 0.87563 0.87695 0.80899 0.81916 0.82176 0.83089 0.86633 0.93903 0.93368 0.80163 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.16 71.98 0.66 -2.31 16 2 C -0.11 -2.94 3.19 -9.59 -0.03 -2.97 16 3 H 0.08 2.36 8.00 -2.39 -0.02 2.34 16 4 C 0.10 2.28 4.47 86.74 0.39 2.67 16 5 N -0.61 -20.03 3.33 -828.06 -2.75 -22.78 16 6 C 0.56 19.81 7.81 86.79 0.68 20.49 16 7 O -0.59 -26.37 16.60 -3.87 -0.06 -26.44 16 8 C -0.15 -4.09 5.87 -20.09 -0.12 -4.21 16 9 C -0.13 -2.32 8.61 22.53 0.19 -2.13 16 10 C -0.12 -1.59 10.03 22.23 0.22 -1.37 16 11 C -0.09 -1.09 10.04 22.33 0.22 -0.87 16 12 C -0.13 -2.12 10.03 22.23 0.22 -1.89 16 13 C -0.08 -2.06 9.59 22.52 0.22 -1.84 16 14 C 0.09 3.67 6.63 86.86 0.58 4.25 16 15 C 0.18 6.92 3.14 46.39 0.15 7.06 16 16 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 17 N -0.73 -35.86 5.26 -316.36 -1.66 -37.52 16 18 C -0.34 -18.90 9.97 84.03 0.84 -18.06 16 19 H 0.06 3.50 7.83 -2.91 -0.02 3.47 16 20 C -0.10 -5.51 5.50 84.86 0.47 -5.05 16 21 N -0.97 -59.94 13.70 21.65 0.30 -59.64 16 22 Si 1.12 52.30 29.92 68.60 2.05 54.35 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H 0.06 1.36 8.06 -2.39 -0.02 1.34 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.11 1.87 6.36 -2.39 -0.02 1.86 16 30 H 0.11 1.85 6.73 -2.39 -0.02 1.83 16 31 H 0.17 2.59 2.74 -7.90 -0.02 2.57 16 32 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.12 3.11 7.67 -2.91 -0.02 3.09 16 36 H 0.04 1.96 7.98 -2.39 -0.02 1.94 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.37 18.44 6.57 -92.71 -0.61 17.83 16 39 H 0.25 15.03 6.77 -92.70 -0.63 14.40 16 Total: -1.00 -76.31 319.51 3.13 -73.18 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.58 Total: 25.09 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.68 Total: -6.23 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -4.12 Total: -119.95 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.35 kcal Total: -76.31 3.13 -73.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054341906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.725 kcal (2) G-P(sol) polarization free energy of solvation -76.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds