Wall clock time and date at job start Mon Mar 30 2020 01:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 C 1.53004 * 109.47356 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47442 * 180.02562 * 4 3 2 6 6 C 1.36886 * 119.99944 * 270.52841 * 5 4 3 7 7 H 1.07996 * 120.00678 * 138.29774 * 6 5 4 8 8 C 1.38784 * 119.99864 * 318.29749 * 6 5 4 9 9 N 1.31582 * 119.99922 * 162.10665 * 8 6 5 10 10 Si 1.86799 * 119.99765 * 342.10435 * 8 6 5 11 11 H 1.48505 * 109.47097 * 95.09280 * 10 8 6 12 12 H 1.48500 * 109.47321 * 215.09304 * 10 8 6 13 13 H 1.48497 * 109.47455 * 335.09527 * 10 8 6 14 14 C 1.38487 * 120.00103 * 90.52038 * 5 4 3 15 15 N 1.32520 * 120.04441 * 353.71420 * 14 5 4 16 16 C 1.32186 * 121.99033 * 180.23298 * 15 14 5 17 17 C 1.37831 * 121.63458 * 0.06116 * 16 15 14 18 18 C 1.39322 * 119.10154 * 359.95528 * 17 16 15 19 19 O 1.34380 * 134.54979 * 179.97438 * 18 17 16 20 20 C 1.34561 * 110.86124 * 180.02562 * 19 18 17 21 21 C 1.50701 * 124.95554 * 180.02562 * 20 19 18 22 22 C 1.34169 * 110.09682 * 0.02562 * 20 19 18 23 23 C 1.40055 * 120.04142 * 173.98536 * 14 5 4 24 24 H 1.09005 * 109.47194 * 299.99704 * 1 2 3 25 25 H 1.08999 * 109.47634 * 59.99665 * 1 2 3 26 26 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46894 * 240.00543 * 2 1 3 28 28 H 1.08995 * 109.47280 * 119.99989 * 2 1 3 29 29 H 1.09004 * 109.47396 * 60.00142 * 3 2 1 30 30 H 1.09003 * 109.47600 * 300.00410 * 3 2 1 31 31 H 1.08998 * 109.46549 * 59.99936 * 4 3 2 32 32 H 1.08999 * 109.46650 * 300.00310 * 4 3 2 33 33 H 0.97002 * 119.99583 * 180.02562 * 9 8 6 34 34 H 1.08004 * 119.18249 * 180.02562 * 16 15 14 35 35 H 1.08002 * 120.45270 * 179.97438 * 17 16 15 36 36 H 1.09004 * 109.46549 * 359.97438 * 21 20 19 37 37 H 1.08997 * 109.46852 * 119.97131 * 21 20 19 38 38 H 1.09001 * 109.47191 * 239.97808 * 21 20 19 39 39 H 1.07994 * 126.91482 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2757 3.4734 -1.1852 7 1 3.9796 4.5059 -1.2973 8 6 4.8765 2.8051 -2.2427 9 7 4.7744 3.2814 -3.4651 10 14 5.8303 1.2296 -1.9309 11 1 4.9441 0.0605 -2.1617 12 1 6.9902 1.1617 -2.8557 13 1 6.3149 1.2138 -0.5273 14 6 4.2999 3.4723 1.1995 15 7 3.9732 2.8918 2.3451 16 6 4.1823 3.4775 3.5116 17 6 4.7525 4.7292 3.6002 18 6 5.1178 5.3917 2.4303 19 8 5.6782 6.5820 2.1567 20 6 5.8240 6.7493 0.8295 21 6 6.4183 7.9687 0.1730 22 6 5.3631 5.6721 0.1757 23 6 4.8847 4.7449 1.2032 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 5.1941 2.8141 -4.2043 34 1 3.8987 2.9626 4.4177 35 1 4.9142 5.1901 4.5634 36 1 6.7086 8.6882 0.9386 37 1 7.2959 7.6789 -0.4047 38 1 5.6802 8.4209 -0.4894 39 1 5.3480 5.5195 -0.8933 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:06 Heat of formation + Delta-G solvation = 41.573585 kcal Electronic energy + Delta-G solvation = -21475.033973 eV Core-core repulsion = 18384.248538 eV Total energy + Delta-G solvation = -3090.785435 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68525 -38.58251 -36.51434 -34.30722 -32.46462 -32.20053 -31.01264 -29.74799 -28.28484 -26.59584 -24.45176 -23.55041 -21.77215 -21.29146 -20.76769 -19.88133 -17.93116 -16.24921 -16.05307 -15.79519 -15.56426 -15.22216 -14.77931 -14.12836 -13.94610 -13.62674 -13.14221 -12.84912 -12.73693 -12.63672 -12.55675 -12.40462 -12.16708 -11.93088 -11.71649 -11.47244 -11.30358 -10.76486 -10.69774 -10.58192 -10.39260 -10.14646 -9.84979 -9.43492 -9.04699 -8.67509 -8.60396 -8.12474 -6.67212 -6.56712 -4.13011 1.84623 2.33752 2.97911 3.13773 3.16536 3.21414 3.42884 3.98305 4.18420 4.59408 4.89852 5.17761 5.33985 5.35442 5.48894 5.51353 5.56782 5.76400 5.78217 5.82290 5.89396 6.02122 6.08958 6.12662 6.15280 6.20073 6.21388 6.26452 6.38916 6.47849 6.62678 6.67504 6.77733 6.88362 6.94816 7.20453 7.32104 7.45496 7.88930 8.02546 8.36532 8.76437 9.00863 9.45985 10.44565 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.007809 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.575425 B = 3584.660174 C = 4801.511004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.110 3.890 5 N -0.429 5.429 6 C -0.317 4.317 7 H 0.112 0.888 8 C 0.066 3.934 9 N -0.854 5.854 10 Si 0.881 3.119 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.261 1.261 14 C 0.428 3.572 15 N -0.587 5.587 16 C 0.175 3.825 17 C -0.286 4.286 18 C 0.123 3.877 19 O -0.198 6.198 20 C -0.057 4.057 21 C -0.062 4.062 22 C -0.132 4.132 23 C -0.232 4.232 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.278 0.722 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 -0.033 6.148 6.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.163 4.163 4 C -0.013 4.013 5 N -0.119 5.119 6 C -0.445 4.445 7 H 0.129 0.871 8 C -0.143 4.143 9 N -0.488 5.488 10 Si 0.708 3.292 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.185 1.185 14 C 0.185 3.815 15 N -0.311 5.311 16 C 0.017 3.983 17 C -0.313 4.313 18 C 0.069 3.931 19 O -0.099 6.099 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.152 4.152 23 C -0.240 4.240 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.166 0.834 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.481 -0.779 5.758 5.997 hybrid contribution 0.858 -0.050 -0.076 0.863 sum -0.623 -0.829 5.682 5.776 Atomic orbital electron populations 1.21735 0.96177 1.00848 1.01748 1.21468 0.95577 0.97432 1.01553 1.21846 0.95772 0.95968 1.02685 1.21717 0.94271 0.84258 1.01077 1.42566 1.56003 1.11292 1.02079 1.19206 1.39233 1.00058 0.86008 0.87074 1.25410 0.95618 0.98496 0.94756 1.69767 1.40164 1.40185 0.98656 0.86825 0.80058 0.82750 0.79534 1.19820 1.21275 1.18469 1.18164 0.89150 0.87832 0.86330 1.67290 1.29515 1.37356 0.96920 1.21835 0.91713 0.90138 0.94577 1.20100 1.17823 0.98769 0.94602 1.19508 0.94519 0.83771 0.95350 1.83732 1.66900 1.33701 1.25597 1.22083 1.08647 0.99676 0.79941 1.20152 1.00458 0.92171 0.99035 1.22675 1.00448 0.91467 1.00573 1.19836 1.12808 0.98038 0.93347 0.92892 0.92842 0.93300 0.92427 0.92179 0.91632 0.91472 0.92060 0.90833 0.91142 0.83449 0.86343 0.91460 0.90356 0.90318 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.12 -2.33 5.54 -26.73 -0.15 -2.48 16 4 C 0.11 2.35 4.17 -4.04 -0.02 2.33 16 5 N -0.43 -10.28 2.20 -114.91 -0.25 -10.53 16 6 C -0.32 -8.11 7.74 -15.09 -0.12 -8.23 16 7 H 0.11 3.02 5.95 -52.49 -0.31 2.71 16 8 C 0.07 1.68 5.35 -17.46 -0.09 1.59 16 9 N -0.85 -22.66 13.97 55.49 0.77 -21.88 16 10 Si 0.88 20.29 24.93 -169.99 -4.24 16.05 16 11 H -0.27 -5.95 6.73 56.52 0.38 -5.57 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.43 10.12 7.35 -155.07 -1.14 8.98 16 15 N -0.59 -12.66 9.18 -12.31 -0.11 -12.77 16 16 C 0.17 3.23 11.13 -17.55 -0.20 3.03 16 17 C -0.29 -5.39 10.13 -39.33 -0.40 -5.78 16 18 C 0.12 2.65 7.49 -38.27 -0.29 2.36 16 19 O -0.20 -4.07 10.57 4.79 0.05 -4.02 16 20 C -0.06 -1.09 7.24 -35.74 -0.26 -1.35 16 21 C -0.06 -0.86 10.39 36.01 0.37 -0.48 16 22 C -0.13 -2.89 9.34 -37.71 -0.35 -3.24 16 23 C -0.23 -5.43 5.98 -105.00 -0.63 -6.06 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.35 3.45 -51.93 -0.18 1.17 16 32 H 0.07 1.53 7.46 -51.93 -0.39 1.15 16 33 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 35 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.17 3.85 5.93 -52.49 -0.31 3.54 16 LS Contribution 318.13 15.07 4.79 4.79 Total: -1.00 -28.25 318.13 -7.45 -35.70 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.42 Total: 5.59 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -3.05 Total: -12.93 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.41 Total: -45.18 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: 0.05 Total: -4.02 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.24 Total: 16.05 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.25 -7.45 -35.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.275 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds