Wall clock time and date at job start Mon Mar 30 2020 01:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 C 1.53004 * 109.47356 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47442 * 180.02562 * 4 3 2 6 6 C 1.36886 * 119.99944 * 270.52841 * 5 4 3 7 7 H 1.07996 * 120.00678 * 138.29774 * 6 5 4 8 8 C 1.38784 * 119.99864 * 318.29749 * 6 5 4 9 9 N 1.31582 * 119.99922 * 162.10665 * 8 6 5 10 10 Si 1.86799 * 119.99765 * 342.10435 * 8 6 5 11 11 H 1.48505 * 109.47097 * 95.09280 * 10 8 6 12 12 H 1.48500 * 109.47321 * 215.09304 * 10 8 6 13 13 H 1.48497 * 109.47455 * 335.09527 * 10 8 6 14 14 C 1.38487 * 120.00103 * 90.52038 * 5 4 3 15 15 N 1.32520 * 120.04441 * 353.71420 * 14 5 4 16 16 C 1.32186 * 121.99033 * 180.23298 * 15 14 5 17 17 C 1.37831 * 121.63458 * 0.06116 * 16 15 14 18 18 C 1.39322 * 119.10154 * 359.95528 * 17 16 15 19 19 O 1.34380 * 134.54979 * 179.97438 * 18 17 16 20 20 C 1.34561 * 110.86124 * 180.02562 * 19 18 17 21 21 C 1.50701 * 124.95554 * 180.02562 * 20 19 18 22 22 C 1.34169 * 110.09682 * 0.02562 * 20 19 18 23 23 C 1.40055 * 120.04142 * 173.98536 * 14 5 4 24 24 H 1.09005 * 109.47194 * 299.99704 * 1 2 3 25 25 H 1.08999 * 109.47634 * 59.99665 * 1 2 3 26 26 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46894 * 240.00543 * 2 1 3 28 28 H 1.08995 * 109.47280 * 119.99989 * 2 1 3 29 29 H 1.09004 * 109.47396 * 60.00142 * 3 2 1 30 30 H 1.09003 * 109.47600 * 300.00410 * 3 2 1 31 31 H 1.08998 * 109.46549 * 59.99936 * 4 3 2 32 32 H 1.08999 * 109.46650 * 300.00310 * 4 3 2 33 33 H 0.97002 * 119.99583 * 180.02562 * 9 8 6 34 34 H 1.08004 * 119.18249 * 180.02562 * 16 15 14 35 35 H 1.08002 * 120.45270 * 179.97438 * 17 16 15 36 36 H 1.09004 * 109.46549 * 359.97438 * 21 20 19 37 37 H 1.08997 * 109.46852 * 119.97131 * 21 20 19 38 38 H 1.09001 * 109.47191 * 239.97808 * 21 20 19 39 39 H 1.07994 * 126.91482 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2757 3.4734 -1.1852 7 1 3.9796 4.5059 -1.2973 8 6 4.8765 2.8051 -2.2427 9 7 4.7744 3.2814 -3.4651 10 14 5.8303 1.2296 -1.9309 11 1 4.9441 0.0605 -2.1617 12 1 6.9902 1.1617 -2.8557 13 1 6.3149 1.2138 -0.5273 14 6 4.2999 3.4723 1.1995 15 7 3.9732 2.8918 2.3451 16 6 4.1823 3.4775 3.5116 17 6 4.7525 4.7292 3.6002 18 6 5.1178 5.3917 2.4303 19 8 5.6782 6.5820 2.1567 20 6 5.8240 6.7493 0.8295 21 6 6.4183 7.9687 0.1730 22 6 5.3631 5.6721 0.1757 23 6 4.8847 4.7449 1.2032 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 5.1941 2.8141 -4.2043 34 1 3.8987 2.9626 4.4177 35 1 4.9142 5.1901 4.5634 36 1 6.7086 8.6882 0.9386 37 1 7.2959 7.6789 -0.4047 38 1 5.6802 8.4209 -0.4894 39 1 5.3480 5.5195 -0.8933 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:05 Heat of formation + Delta-G solvation = 26.966927 kcal Electronic energy + Delta-G solvation = -21475.667365 eV Core-core repulsion = 18384.248538 eV Total energy + Delta-G solvation = -3091.418827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.31336 -40.25696 -38.15220 -35.74347 -34.24532 -33.80253 -32.58117 -31.26937 -29.78045 -28.16167 -26.13988 -25.08142 -23.41058 -22.89378 -22.12181 -21.53341 -19.72380 -18.02656 -17.63342 -17.48713 -17.18209 -16.89424 -16.20429 -15.71967 -15.53730 -15.19066 -14.70002 -14.41130 -14.21646 -14.14174 -13.86191 -13.80955 -13.70810 -13.38541 -13.19748 -13.06984 -12.88458 -12.30636 -12.17301 -12.07689 -11.89073 -11.78555 -11.44752 -11.12795 -10.87659 -10.32456 -10.30814 -9.78584 -8.58286 -8.28199 -6.07589 0.24832 0.64519 1.13868 1.26652 1.35045 1.54927 1.87502 2.10332 2.48934 2.74604 3.18451 3.68434 3.92256 3.95434 4.04602 4.15104 4.27216 4.33289 4.36632 4.43225 4.54246 4.55904 4.73780 4.76311 4.80195 4.89458 4.92865 4.95418 5.00683 5.07468 5.14139 5.27737 5.35517 5.37390 5.46354 5.56173 5.66534 5.71878 5.99900 6.30166 6.57160 7.01036 7.14608 7.68319 8.55338 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.007809 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.575425 B = 3584.660174 C = 4801.511004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.113 4.113 4 C 0.111 3.889 5 N -0.451 5.451 6 C -0.311 4.311 7 H 0.080 0.920 8 C 0.030 3.970 9 N -0.895 5.895 10 Si 0.929 3.071 11 H -0.252 1.252 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.410 3.590 15 N -0.592 5.592 16 C 0.170 3.830 17 C -0.268 4.268 18 C 0.105 3.895 19 O -0.198 6.198 20 C -0.030 4.030 21 C -0.062 4.062 22 C -0.174 4.174 23 C -0.267 4.267 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.281 0.719 34 H 0.198 0.802 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -0.319 8.677 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.152 4.152 4 C -0.012 4.012 5 N -0.145 5.145 6 C -0.440 4.440 7 H 0.098 0.902 8 C -0.174 4.174 9 N -0.531 5.531 10 Si 0.755 3.245 11 H -0.178 1.178 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.169 3.831 15 N -0.316 5.316 16 C 0.014 3.986 17 C -0.294 4.294 18 C 0.050 3.950 19 O -0.099 6.099 20 C -0.077 4.077 21 C -0.118 4.118 22 C -0.194 4.194 23 C -0.275 4.275 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.215 0.785 35 H 0.175 0.825 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.389 -1.061 8.335 8.516 hybrid contribution 0.846 0.228 -0.608 1.067 sum -0.542 -0.832 7.727 7.790 Atomic orbital electron populations 1.21708 0.94379 1.02372 1.01678 1.21460 0.97137 0.94788 1.02221 1.21741 0.94174 0.98190 1.01083 1.21768 0.95692 0.83061 1.00647 1.42556 1.58173 1.12141 1.01629 1.18902 1.38997 0.99026 0.87081 0.90234 1.25854 0.96222 1.00896 0.94473 1.69831 1.42086 1.41858 0.99309 0.86072 0.79236 0.80919 0.78239 1.17775 1.21121 1.19994 1.18464 0.89539 0.88097 0.87020 1.67356 1.29228 1.37784 0.97236 1.22703 0.90550 0.90305 0.95034 1.20658 1.15123 0.98370 0.95269 1.19995 0.95153 0.84147 0.95693 1.83765 1.66806 1.33312 1.26002 1.22925 1.05377 1.00022 0.79347 1.20419 1.01154 0.90429 0.99786 1.22557 1.03714 0.93262 0.99852 1.20242 1.13681 0.98686 0.94863 0.92563 0.93385 0.90946 0.92393 0.90828 0.92376 0.93789 0.92978 0.90395 0.90918 0.78493 0.82518 0.88833 0.88811 0.88743 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.47 5.93 30.59 0.18 -3.29 16 3 C -0.11 -4.30 5.54 30.59 0.17 -4.13 16 4 C 0.11 4.80 4.17 86.38 0.36 5.16 16 5 N -0.45 -22.36 2.20 -517.46 -1.14 -23.50 16 6 C -0.31 -16.86 7.74 84.04 0.65 -16.21 16 7 H 0.08 4.70 5.95 -2.91 -0.02 4.69 16 8 C 0.03 1.61 5.35 84.86 0.45 2.06 16 9 N -0.89 -49.73 13.97 21.64 0.30 -49.43 16 10 Si 0.93 42.92 24.93 68.60 1.71 44.63 16 11 H -0.25 -10.73 6.73 99.48 0.67 -10.06 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 14 C 0.41 19.71 7.35 133.43 0.98 20.69 16 15 N -0.59 -24.85 9.18 -192.85 -1.77 -26.62 16 16 C 0.17 5.74 11.13 84.54 0.94 6.68 16 17 C -0.27 -9.25 10.13 22.43 0.23 -9.02 16 18 C 0.10 4.38 7.49 23.12 0.17 4.55 16 19 O -0.20 -7.82 10.57 -5.76 -0.06 -7.88 16 20 C -0.03 -1.13 7.24 24.76 0.18 -0.95 16 21 C -0.06 -1.59 10.39 71.24 0.74 -0.85 16 22 C -0.17 -7.91 9.34 23.48 0.22 -7.69 16 23 C -0.27 -12.70 5.98 -20.11 -0.12 -12.82 16 24 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 2.32 3.45 -2.39 -0.01 2.31 16 32 H 0.08 3.23 7.46 -2.39 -0.02 3.21 16 33 H 0.28 14.54 8.31 -92.71 -0.77 13.76 16 34 H 0.20 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.15 7.31 5.93 -2.91 -0.02 7.29 16 Total: -1.00 -64.21 318.13 5.92 -58.28 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.01 Total: 23.16 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 5.87 Total: -18.65 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -2.61 Total: -99.55 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.06 Total: -7.88 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.71 Total: 44.63 kcal Total: -64.21 5.92 -58.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.252 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds