Wall clock time and date at job start Mon Mar 30 2020 01:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.55519 * 2 1 4 4 C 1.51164 * 110.51024 * 122.67529 * 2 1 3 5 5 C 1.37753 * 132.74866 * 298.64892 * 4 2 1 6 6 C 1.38248 * 120.00897 * 180.02562 * 5 4 2 7 7 C 1.38985 * 119.75239 * 359.97438 * 6 5 4 8 8 N 1.39672 * 119.89635 * 179.71812 * 7 6 5 9 9 C 1.46494 * 119.99789 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.47345 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47269 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46839 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00302 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99625 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99403 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00070 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47277 * 89.99949 * 16 14 12 18 18 H 1.48505 * 109.46906 * 210.00173 * 16 14 12 19 19 H 1.48498 * 109.46866 * 329.99580 * 16 14 12 20 20 C 1.38614 * 120.21274 * 0.02562 * 7 6 5 21 21 C 1.38962 * 106.32008 * 118.64927 * 4 2 1 22 22 N 1.39541 * 110.22310 * 359.97438 * 21 4 2 23 23 C 1.34366 * 112.25270 * 0.02562 * 22 21 4 24 24 O 1.21279 * 126.43573 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.47246 * 297.32267 * 1 2 3 26 26 H 1.08999 * 109.47097 * 57.32519 * 1 2 3 27 27 H 1.09005 * 109.46825 * 177.32534 * 1 2 3 28 28 H 1.07998 * 119.99935 * 0.02562 * 5 4 2 29 29 H 1.07999 * 120.13049 * 179.97438 * 6 5 4 30 30 H 0.97003 * 120.00322 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47343 * 299.99889 * 9 8 7 32 32 H 1.09002 * 109.47475 * 59.99790 * 9 8 7 33 33 H 1.08995 * 109.46912 * 300.00059 * 10 9 8 34 34 H 1.09002 * 109.46653 * 59.99718 * 10 9 8 35 35 H 1.08995 * 109.47475 * 300.00049 * 11 10 9 36 36 H 1.09002 * 109.46769 * 60.00166 * 11 10 9 37 37 H 0.97001 * 119.99203 * 180.02562 * 15 14 12 38 38 H 1.07999 * 119.96259 * 180.02562 * 20 7 6 39 39 H 0.96996 * 123.87503 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0597 -0.7644 1.1918 5 6 1.9331 -0.5817 2.5512 6 6 2.5429 -1.4608 3.4268 7 6 3.2822 -2.5276 2.9298 8 7 3.9044 -3.4142 3.8116 9 6 3.7768 -3.2191 5.2579 10 6 4.5464 -4.3197 5.9909 11 6 4.4136 -4.1156 7.5014 12 6 5.1712 -5.2001 8.2233 13 1 5.6953 -5.9587 7.6610 14 6 5.1951 -5.2237 9.6017 15 7 5.8567 -6.1698 10.2317 16 14 4.2880 -3.9119 10.5743 17 1 2.8983 -4.3637 10.8383 18 1 4.9867 -3.6801 11.8640 19 1 4.2582 -2.6490 9.7936 20 6 3.4092 -2.7109 1.5617 21 6 2.7954 -1.8260 0.6792 22 7 2.7752 -1.7979 -0.7158 23 6 2.0601 -0.7655 -1.1936 24 8 1.8743 -0.4974 -2.3617 25 1 -0.3633 0.4717 0.9130 26 1 -0.3633 0.5548 -0.8650 27 1 -0.3633 -1.0266 -0.0480 28 1 1.3574 0.2484 2.9332 29 1 2.4452 -1.3192 4.4930 30 1 4.4204 -4.1595 3.4664 31 1 4.1853 -2.2461 5.5308 32 1 2.7245 -3.2631 5.5390 33 1 4.1374 -5.2925 5.7180 34 1 5.5986 -4.2761 5.7098 35 1 4.8229 -3.1429 7.7740 36 1 3.3614 -4.1589 7.7827 37 1 5.8732 -6.1866 11.2014 38 1 3.9843 -3.5415 1.1799 39 1 3.2258 -2.4488 -1.2763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:19 Heat of formation + Delta-G solvation = -16.749010 kcal Electronic energy + Delta-G solvation = -19743.290722 eV Core-core repulsion = 16649.976229 eV Total energy + Delta-G solvation = -3093.314493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68303 -38.96055 -37.06185 -35.10469 -33.90773 -33.05995 -31.55550 -30.05634 -28.35211 -26.67029 -25.16806 -23.54360 -22.25368 -21.07386 -20.71256 -20.28502 -17.94839 -17.25096 -16.89019 -16.25289 -16.14233 -15.41980 -15.04400 -14.68168 -14.60778 -14.20787 -13.90106 -13.54598 -13.42969 -13.15311 -12.74420 -12.60256 -12.47022 -12.17052 -12.03206 -11.65373 -11.26494 -11.10360 -10.99799 -10.87203 -10.29641 -10.15199 -9.97177 -9.77888 -9.71886 -9.29358 -8.61334 -8.37526 -7.39443 -6.11527 -4.10680 1.09879 1.40352 2.29028 2.72939 3.25550 3.33523 3.35595 3.50564 3.73671 3.95239 4.24378 4.38425 4.70394 4.87614 4.94293 5.15367 5.22141 5.26818 5.32115 5.37594 5.43927 5.52740 5.55418 5.61706 5.81895 5.87958 5.94913 6.12708 6.28940 6.35249 6.37199 6.40830 6.58532 6.69416 6.81622 7.14396 7.28400 7.32470 7.69591 7.71033 7.76307 8.44858 8.92418 9.50191 11.01809 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.046340 B = 0.002752 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.085708 B =10173.669571 C =10683.390991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 H 0.117 0.883 4 C -0.207 4.207 5 C -0.015 4.015 6 C -0.215 4.215 7 C 0.258 3.742 8 N -0.737 5.737 9 C 0.117 3.883 10 C -0.113 4.113 11 C -0.010 4.010 12 C -0.524 4.524 13 H 0.071 0.929 14 C 0.066 3.934 15 N -0.902 5.902 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.222 4.222 21 C 0.185 3.815 22 N -0.660 5.660 23 C 0.532 3.468 24 O -0.510 6.510 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.400 0.600 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.122 0.878 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.802 11.687 -18.505 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 H 0.135 0.865 4 C -0.212 4.212 5 C -0.034 4.034 6 C -0.239 4.239 7 C 0.150 3.850 8 N -0.364 5.364 9 C -0.006 4.006 10 C -0.151 4.151 11 C -0.048 4.048 12 C -0.562 4.562 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.541 5.541 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.248 4.248 21 C 0.088 3.912 22 N -0.302 5.302 23 C 0.320 3.680 24 O -0.384 6.384 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.235 0.765 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.946 11.900 -18.749 23.941 hybrid contribution 0.187 -0.215 0.309 0.420 sum -8.759 11.685 -18.440 23.522 Atomic orbital electron populations 1.21552 0.91107 1.02826 1.02972 1.20507 0.98253 1.00293 0.90474 0.86517 1.19429 1.07762 1.00022 0.93957 1.19929 0.95913 0.97433 0.90173 1.20634 1.05476 0.97633 1.00127 1.17447 0.89925 0.89155 0.88464 1.45033 1.55831 1.30232 1.05263 1.21681 1.00569 1.00232 0.78136 1.21674 0.99246 0.96538 0.97671 1.19495 0.96872 0.97742 0.90681 1.21094 1.32061 1.11448 0.91567 0.91059 1.25047 0.95030 0.95591 0.97870 1.69914 1.42259 1.33278 1.08638 0.86758 0.80046 0.82844 0.79514 1.20242 1.21353 1.18941 1.19571 1.10836 1.03806 0.90611 1.17696 0.96134 0.95477 0.81937 1.43742 1.50964 1.29570 1.05964 1.20721 0.77017 0.80453 0.89806 1.90785 1.59186 1.70068 1.18401 0.90943 0.91547 0.92203 0.85661 0.85206 0.76502 0.92258 0.92282 0.92141 0.92119 0.96357 0.96797 0.92652 0.85970 0.75188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.29 37.16 0.35 -0.62 16 2 C -0.07 -0.67 3.59 -92.36 -0.33 -1.00 16 3 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.21 -2.06 5.67 -104.30 -0.59 -2.65 16 5 C -0.02 -0.15 10.03 -39.76 -0.40 -0.54 16 6 C -0.22 -2.37 9.32 -39.30 -0.37 -2.73 16 7 C 0.26 2.99 6.64 -83.87 -0.56 2.43 16 8 N -0.74 -8.91 5.73 -58.69 -0.34 -9.25 16 9 C 0.12 1.64 4.91 -4.04 -0.02 1.62 16 10 C -0.11 -1.98 5.27 -26.73 -0.14 -2.12 16 11 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 12 C -0.52 -14.36 9.66 -34.44 -0.33 -14.70 16 13 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 14 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 15 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 16 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 20 C -0.22 -2.34 9.91 -39.07 -0.39 -2.73 16 21 C 0.19 1.92 7.10 -83.71 -0.59 1.33 16 22 N -0.66 -6.35 5.88 -9.72 -0.06 -6.40 16 23 C 0.53 5.87 8.04 -10.83 -0.09 5.79 16 24 O -0.51 -7.12 18.03 5.56 0.10 -7.02 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.38 6.72 -52.49 -0.35 1.03 16 30 H 0.40 4.39 8.48 -40.82 -0.35 4.04 16 31 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 32 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 36 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.41 3.13 8.96 -40.82 -0.37 2.77 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -31.50 326.83 -8.56 -40.06 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.62 Total: 2.36 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -3.67 Total: -14.48 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.38 Total: -42.14 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.10 Total: -7.02 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.50 -8.56 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.310 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds