Wall clock time and date at job start Mon Mar 30 2020 01:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.55519 * 2 1 4 4 C 1.51164 * 110.51024 * 122.67529 * 2 1 3 5 5 C 1.37753 * 132.74866 * 298.64892 * 4 2 1 6 6 C 1.38248 * 120.00897 * 180.02562 * 5 4 2 7 7 C 1.38985 * 119.75239 * 359.97438 * 6 5 4 8 8 N 1.39672 * 119.89635 * 179.71812 * 7 6 5 9 9 C 1.46494 * 119.99789 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.47345 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47269 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46839 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00302 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99625 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99403 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00070 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47277 * 89.99949 * 16 14 12 18 18 H 1.48505 * 109.46906 * 210.00173 * 16 14 12 19 19 H 1.48498 * 109.46866 * 329.99580 * 16 14 12 20 20 C 1.38614 * 120.21274 * 0.02562 * 7 6 5 21 21 C 1.38962 * 106.32008 * 118.64927 * 4 2 1 22 22 N 1.39541 * 110.22310 * 359.97438 * 21 4 2 23 23 C 1.34366 * 112.25270 * 0.02562 * 22 21 4 24 24 O 1.21279 * 126.43573 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.47246 * 297.32267 * 1 2 3 26 26 H 1.08999 * 109.47097 * 57.32519 * 1 2 3 27 27 H 1.09005 * 109.46825 * 177.32534 * 1 2 3 28 28 H 1.07998 * 119.99935 * 0.02562 * 5 4 2 29 29 H 1.07999 * 120.13049 * 179.97438 * 6 5 4 30 30 H 0.97003 * 120.00322 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47343 * 299.99889 * 9 8 7 32 32 H 1.09002 * 109.47475 * 59.99790 * 9 8 7 33 33 H 1.08995 * 109.46912 * 300.00059 * 10 9 8 34 34 H 1.09002 * 109.46653 * 59.99718 * 10 9 8 35 35 H 1.08995 * 109.47475 * 300.00049 * 11 10 9 36 36 H 1.09002 * 109.46769 * 60.00166 * 11 10 9 37 37 H 0.97001 * 119.99203 * 180.02562 * 15 14 12 38 38 H 1.07999 * 119.96259 * 180.02562 * 20 7 6 39 39 H 0.96996 * 123.87503 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0597 -0.7644 1.1918 5 6 1.9331 -0.5817 2.5512 6 6 2.5429 -1.4608 3.4268 7 6 3.2822 -2.5276 2.9298 8 7 3.9044 -3.4142 3.8116 9 6 3.7768 -3.2191 5.2579 10 6 4.5464 -4.3197 5.9909 11 6 4.4136 -4.1156 7.5014 12 6 5.1712 -5.2001 8.2233 13 1 5.6953 -5.9587 7.6610 14 6 5.1951 -5.2237 9.6017 15 7 5.8567 -6.1698 10.2317 16 14 4.2880 -3.9119 10.5743 17 1 2.8983 -4.3637 10.8383 18 1 4.9867 -3.6801 11.8640 19 1 4.2582 -2.6490 9.7936 20 6 3.4092 -2.7109 1.5617 21 6 2.7954 -1.8260 0.6792 22 7 2.7752 -1.7979 -0.7158 23 6 2.0601 -0.7655 -1.1936 24 8 1.8743 -0.4974 -2.3617 25 1 -0.3633 0.4717 0.9130 26 1 -0.3633 0.5548 -0.8650 27 1 -0.3633 -1.0266 -0.0480 28 1 1.3574 0.2484 2.9332 29 1 2.4452 -1.3192 4.4930 30 1 4.4204 -4.1595 3.4664 31 1 4.1853 -2.2461 5.5308 32 1 2.7245 -3.2631 5.5390 33 1 4.1374 -5.2925 5.7180 34 1 5.5986 -4.2761 5.7098 35 1 4.8229 -3.1429 7.7740 36 1 3.3614 -4.1589 7.7827 37 1 5.8732 -6.1866 11.2014 38 1 3.9843 -3.5415 1.1799 39 1 3.2258 -2.4488 -1.2763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:19 Heat of formation + Delta-G solvation = -37.267644 kcal Electronic energy + Delta-G solvation = -19744.180477 eV Core-core repulsion = 16649.976229 eV Total energy + Delta-G solvation = -3094.204247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.47809 -39.83478 -38.04465 -36.31994 -35.07388 -34.32422 -33.06145 -30.94211 -29.47925 -27.89195 -26.02423 -24.75225 -23.41575 -21.92568 -21.83563 -21.44561 -18.98986 -18.69005 -18.10565 -17.18449 -16.93093 -16.51767 -16.30005 -16.10891 -15.48090 -15.36758 -14.75685 -14.62927 -14.46615 -14.40272 -13.97608 -13.73086 -13.58944 -13.24197 -13.00452 -12.77841 -12.67902 -12.25324 -12.09521 -11.79813 -11.76028 -11.62669 -11.50258 -11.29641 -11.13421 -10.74662 -10.62132 -9.18357 -8.27785 -8.25609 -6.32526 0.28648 0.62222 1.39878 1.41784 1.46138 1.53458 1.94269 2.38791 2.59098 2.94147 3.08306 3.17966 3.51717 3.98007 4.13522 4.22383 4.27571 4.29810 4.37496 4.48156 4.56239 4.64136 4.78987 4.88501 4.93766 4.96919 5.00401 5.05850 5.16234 5.25572 5.39260 5.48996 5.53608 5.59446 5.60347 5.67286 5.81857 6.00643 6.28247 6.43043 6.76552 6.84970 6.93279 7.32475 8.89053 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.046340 B = 0.002752 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.085708 B =10173.669571 C =10683.390991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 H 0.134 0.866 4 C -0.205 4.205 5 C -0.012 4.012 6 C -0.224 4.224 7 C 0.242 3.758 8 N -0.740 5.740 9 C 0.133 3.867 10 C -0.104 4.104 11 C -0.009 4.009 12 C -0.534 4.534 13 H 0.029 0.971 14 C -0.001 4.001 15 N -0.955 5.955 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.288 1.288 19 H -0.239 1.239 20 C -0.223 4.223 21 C 0.173 3.827 22 N -0.654 5.654 23 C 0.527 3.473 24 O -0.545 6.545 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.404 0.596 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.132 0.868 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 14.097 -18.658 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.151 0.849 4 C -0.210 4.210 5 C -0.031 4.031 6 C -0.247 4.247 7 C 0.136 3.864 8 N -0.368 5.368 9 C 0.009 3.991 10 C -0.142 4.142 11 C -0.047 4.047 12 C -0.572 4.572 13 H 0.048 0.952 14 C -0.197 4.197 15 N -0.595 5.595 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.215 1.215 19 H -0.162 1.162 20 C -0.249 4.249 21 C 0.075 3.925 22 N -0.296 5.296 23 C 0.316 3.684 24 O -0.423 6.423 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.239 0.761 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.150 0.850 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.616 14.307 -18.930 25.995 hybrid contribution 0.762 -1.045 0.282 1.323 sum -9.854 13.263 -18.648 24.915 Atomic orbital electron populations 1.21563 0.89897 1.02553 1.04145 1.20572 0.99135 1.00598 0.88854 0.84883 1.19646 1.07152 0.99710 0.94476 1.20181 0.95470 0.97735 0.89690 1.20828 1.05489 0.97685 1.00694 1.17578 0.90642 0.89549 0.88669 1.44839 1.56599 1.30860 1.04504 1.21356 1.00160 0.98682 0.78909 1.21459 0.99599 0.97823 0.95297 1.19451 0.96367 0.95837 0.93085 1.21523 1.31830 1.11912 0.91967 0.95228 1.26102 0.96108 0.98218 0.99296 1.70084 1.44523 1.35871 1.09065 0.85606 0.78628 0.80441 0.77666 1.19150 1.21460 1.16187 1.19672 1.10712 1.04101 0.90400 1.17815 0.96644 0.95935 0.82067 1.43720 1.50479 1.29433 1.05966 1.21088 0.76754 0.80692 0.89856 1.90765 1.60611 1.71061 1.19863 0.88912 0.91351 0.93105 0.82965 0.84767 0.76117 0.91685 0.91631 0.92743 0.92761 0.95593 0.95726 0.92583 0.84963 0.74376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 9.29 71.98 0.67 -0.92 16 2 C -0.07 -1.11 3.59 -11.92 -0.04 -1.15 16 3 H 0.13 1.68 8.14 -2.39 -0.02 1.67 16 4 C -0.21 -3.54 5.67 -19.66 -0.11 -3.65 16 5 C -0.01 -0.19 10.03 22.16 0.22 0.03 16 6 C -0.22 -4.30 9.32 22.45 0.21 -4.09 16 7 C 0.24 5.11 6.64 38.16 0.25 5.36 16 8 N -0.74 -16.58 5.73 -339.61 -1.95 -18.53 16 9 C 0.13 3.41 4.91 86.38 0.42 3.83 16 10 C -0.10 -3.52 5.27 30.60 0.16 -3.36 16 11 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 12 C -0.53 -29.76 9.66 25.60 0.25 -29.51 16 13 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 14 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 15 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 16 Si 0.95 42.48 27.47 68.60 1.88 44.37 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 20 C -0.22 -4.32 9.91 22.60 0.22 -4.09 16 21 C 0.17 3.28 7.10 38.33 0.27 3.55 16 22 N -0.65 -11.79 5.88 -303.28 -1.78 -13.57 16 23 C 0.53 11.02 8.04 87.94 0.71 11.73 16 24 O -0.55 -14.99 18.03 -3.03 -0.05 -15.05 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.13 2.44 6.72 -2.91 -0.02 2.42 16 30 H 0.40 8.36 8.48 -92.71 -0.79 7.58 16 31 H 0.06 1.61 7.94 -2.39 -0.02 1.59 16 32 H 0.07 1.61 7.94 -2.39 -0.02 1.59 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 35 H 0.03 1.07 7.20 -2.39 -0.02 1.06 16 36 H 0.02 1.00 7.57 -2.39 -0.02 0.99 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.42 6.03 8.96 -92.71 -0.83 5.20 16 Total: -1.00 -68.87 326.83 1.62 -67.26 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.60 Total: 16.57 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 3.82 Total: -22.14 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -3.43 Total: -91.01 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.05 Total: -15.05 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.88 Total: 44.37 kcal Total: -68.87 1.62 -67.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.990 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds