Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.47106 * 119.99875 * 2 1 4 4 O 1.21615 * 119.99963 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99867 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47030 * 180.02562 * 6 5 3 8 8 N 1.46506 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.39673 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.38914 * 120.07707 * 359.72057 * 9 8 7 11 11 C 1.38106 * 119.92380 * 179.76726 * 10 9 8 12 12 C 1.38287 * 120.07267 * 0.51577 * 11 10 9 13 13 C 1.50701 * 119.92365 * 179.72214 * 12 11 10 14 14 C 1.50700 * 109.47054 * 270.02104 * 13 12 11 15 15 H 1.08007 * 120.00062 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00347 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99604 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00234 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46762 * 89.99753 * 18 16 14 20 20 H 1.48501 * 109.46735 * 209.99882 * 18 16 14 21 21 H 1.48500 * 109.46894 * 329.99867 * 18 16 14 22 22 C 1.38283 * 120.15072 * 359.74237 * 12 11 10 23 23 C 1.38101 * 120.07597 * 359.97438 * 22 12 11 24 24 H 1.07999 * 120.00358 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.99400 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00358 * 179.97438 * 2 1 3 27 27 H 0.96999 * 120.00047 * 0.02562 * 5 3 2 28 28 H 1.09004 * 109.47074 * 60.00441 * 6 5 3 29 29 H 1.09004 * 109.47714 * 300.00350 * 6 5 3 30 30 H 1.09004 * 109.46930 * 60.00232 * 7 6 5 31 31 H 1.09000 * 109.47312 * 300.00176 * 7 6 5 32 32 H 0.96999 * 120.00080 * 0.02562 * 8 7 6 33 33 H 1.07998 * 120.03713 * 0.02562 * 10 9 8 34 34 H 1.07994 * 119.96460 * 180.25714 * 11 10 9 35 35 H 1.08994 * 109.47299 * 30.02087 * 13 12 11 36 36 H 1.09002 * 109.47442 * 150.02258 * 13 12 11 37 37 H 0.97006 * 119.99840 * 180.02562 * 17 16 14 38 38 H 1.08009 * 119.96048 * 180.02562 * 22 12 11 39 39 H 1.08005 * 120.03673 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3272 -0.0005 5 7 3.4132 1.2741 0.0005 6 6 4.1456 2.5428 0.0000 7 6 5.6498 2.2633 0.0001 8 7 6.3823 3.5322 0.0001 9 6 7.7790 3.5322 -0.0003 10 6 8.4752 2.3301 0.0051 11 6 9.8562 2.3338 -0.0002 12 6 10.5460 3.5323 -0.0001 13 6 12.0530 3.5324 0.0004 14 6 12.5548 3.5321 1.4214 15 1 11.8527 3.5323 2.2421 16 6 13.9103 3.5326 1.6740 17 7 14.7652 3.5329 0.6747 18 14 14.5323 3.5330 3.4354 19 1 14.6976 2.1329 3.9022 20 1 15.8401 4.2335 3.4983 21 1 13.5535 4.2327 4.3058 22 6 9.8561 4.7308 -0.0001 23 6 8.4751 4.7343 -0.0007 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8700 -0.9353 0.0004 27 1 3.8982 0.4341 0.0005 28 1 3.8819 3.1149 0.8895 29 1 3.8825 3.1139 -0.8905 30 1 5.9132 1.6914 -0.8897 31 1 5.9132 1.6921 0.8903 32 1 5.8972 4.3722 0.0005 33 1 7.9371 1.3937 0.0092 34 1 10.3981 1.3996 -0.0002 35 1 12.4166 2.6427 -0.5134 36 1 12.4166 4.4226 -0.5130 37 1 15.7189 3.5330 0.8523 38 1 10.3979 5.6651 -0.0004 39 1 7.9369 5.6707 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169804332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = 1.000922 kcal Electronic energy + Delta-G solvation = -19163.958762 eV Core-core repulsion = 16071.413964 eV Total energy + Delta-G solvation = -3092.544798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06052 -38.92974 -36.51639 -34.67092 -33.37767 -32.94055 -30.85852 -30.20013 -28.68326 -26.02344 -24.27629 -22.86834 -22.65318 -21.45849 -20.26654 -19.89745 -17.84128 -17.20714 -16.24910 -16.06681 -15.95987 -15.50099 -14.78916 -14.66274 -14.61979 -14.13582 -13.87770 -13.48242 -12.98776 -12.90814 -12.73357 -12.33962 -12.33178 -11.91206 -11.74788 -11.23013 -11.20364 -10.66421 -10.52675 -10.37725 -10.29197 -10.11464 -9.81882 -9.48794 -9.42091 -9.04334 -8.37534 -8.25091 -6.81820 -5.97678 -4.02026 0.96712 2.10799 2.33905 2.64683 2.92792 3.32815 3.38953 3.43513 3.74355 4.31148 4.43692 4.51272 4.62885 4.64651 4.78883 5.08948 5.14745 5.35059 5.49052 5.53510 5.56420 5.59432 5.76781 5.82751 5.96385 6.04825 6.10771 6.31020 6.40500 6.69952 6.82439 7.06975 7.28582 7.29996 7.38626 7.60753 7.78680 7.82240 7.97376 7.97783 7.99762 8.40920 9.03795 9.61388 11.10795 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.038419 B = 0.002439 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.637894 B =11477.257240 C =11733.166408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.215 4.215 3 C 0.543 3.457 4 O -0.545 6.545 5 N -0.722 5.722 6 C 0.109 3.891 7 C 0.122 3.878 8 N -0.755 5.755 9 C 0.180 3.820 10 C -0.193 4.193 11 C -0.082 4.082 12 C -0.082 4.082 13 C 0.052 3.948 14 C -0.508 4.508 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.080 4.080 23 C -0.190 4.190 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.404 0.596 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.396 0.604 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.117 0.883 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.216 -7.007 -2.619 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.236 4.236 3 C 0.332 3.668 4 O -0.423 6.423 5 N -0.374 5.374 6 C -0.015 4.015 7 C -0.004 4.004 8 N -0.390 5.390 9 C 0.081 3.919 10 C -0.216 4.216 11 C -0.100 4.100 12 C -0.084 4.084 13 C 0.015 3.985 14 C -0.546 4.546 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.099 4.099 23 C -0.212 4.212 24 H 0.132 0.868 25 H 0.134 0.866 26 H 0.146 0.854 27 H 0.239 0.761 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.230 0.770 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.135 0.865 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -24.479 -6.427 -2.657 25.448 hybrid contribution 0.560 -0.195 1.019 1.179 sum -23.920 -6.622 -1.638 24.873 Atomic orbital electron populations 1.24774 0.95375 1.03436 0.89537 1.22757 0.96489 0.96859 1.07491 1.18723 0.81932 0.90062 0.76121 1.90808 1.68254 1.33384 1.49893 1.45707 1.06422 1.09655 1.75637 1.21427 0.90667 0.86239 1.03174 1.21227 0.89384 0.88132 1.01642 1.44107 1.02883 1.06381 1.85629 1.17551 0.82187 0.94139 0.98057 1.20498 0.94541 0.95388 1.11144 1.20851 0.92642 0.98267 0.98266 1.20488 0.98774 0.91826 0.97287 1.18258 0.84810 0.98024 0.97367 1.21128 0.91321 1.50394 0.91802 0.92563 1.25026 0.96981 0.95409 0.97090 1.69961 1.02045 1.50887 1.30608 0.86566 0.78174 0.78106 0.85030 1.20670 1.21234 1.19858 1.20847 0.92559 0.98319 0.98142 1.20474 0.94553 0.95376 1.10817 0.86766 0.86570 0.85384 0.76099 0.90775 0.90796 0.92054 0.92032 0.77016 0.87405 0.86576 0.95657 0.95633 0.92960 0.86477 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 14.31 28.91 0.41 -0.08 16 2 C -0.22 -1.32 10.03 -37.80 -0.38 -1.70 16 3 C 0.54 5.14 7.76 -12.66 -0.10 5.04 16 4 O -0.54 -7.38 16.22 5.26 0.09 -7.30 16 5 N -0.72 -5.40 5.55 -61.49 -0.34 -5.74 16 6 C 0.11 0.93 5.79 -4.04 -0.02 0.91 16 7 C 0.12 1.12 5.03 -4.04 -0.02 1.10 16 8 N -0.76 -8.91 5.73 -58.63 -0.34 -9.25 16 9 C 0.18 2.81 6.65 -83.79 -0.56 2.25 16 10 C -0.19 -3.20 9.31 -39.38 -0.37 -3.57 16 11 C -0.08 -1.60 9.69 -39.61 -0.38 -1.98 16 12 C -0.08 -1.81 5.07 -104.59 -0.53 -2.34 16 13 C 0.05 1.36 5.10 -29.03 -0.15 1.21 16 14 C -0.51 -14.39 9.09 -34.44 -0.31 -14.70 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.08 -1.58 9.69 -39.62 -0.38 -1.96 16 23 C -0.19 -3.19 9.90 -39.38 -0.39 -3.58 16 24 H 0.11 0.76 7.49 -52.49 -0.39 0.37 16 25 H 0.12 0.29 8.06 -52.49 -0.42 -0.13 16 26 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 27 H 0.40 1.90 8.46 -40.82 -0.35 1.55 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.55 7.96 -51.93 -0.41 0.14 16 31 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 32 H 0.40 4.07 8.49 -40.82 -0.35 3.73 16 33 H 0.11 1.49 6.73 -52.49 -0.35 1.14 16 34 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 35 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 39 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -33.68 340.39 -8.63 -42.31 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.60 Total: 1.98 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -3.28 Total: -17.89 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.06 Total: -40.95 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.68 -8.63 -42.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169804332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.315 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds