Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.47106 * 119.99875 * 2 1 4 4 O 1.21615 * 119.99963 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99867 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47030 * 180.02562 * 6 5 3 8 8 N 1.46506 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.39673 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.38914 * 120.07707 * 359.72057 * 9 8 7 11 11 C 1.38106 * 119.92380 * 179.76726 * 10 9 8 12 12 C 1.38287 * 120.07267 * 0.51577 * 11 10 9 13 13 C 1.50701 * 119.92365 * 179.72214 * 12 11 10 14 14 C 1.50700 * 109.47054 * 270.02104 * 13 12 11 15 15 H 1.08007 * 120.00062 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00347 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99604 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00234 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46762 * 89.99753 * 18 16 14 20 20 H 1.48501 * 109.46735 * 209.99882 * 18 16 14 21 21 H 1.48500 * 109.46894 * 329.99867 * 18 16 14 22 22 C 1.38283 * 120.15072 * 359.74237 * 12 11 10 23 23 C 1.38101 * 120.07597 * 359.97438 * 22 12 11 24 24 H 1.07999 * 120.00358 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.99400 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00358 * 179.97438 * 2 1 3 27 27 H 0.96999 * 120.00047 * 0.02562 * 5 3 2 28 28 H 1.09004 * 109.47074 * 60.00441 * 6 5 3 29 29 H 1.09004 * 109.47714 * 300.00350 * 6 5 3 30 30 H 1.09004 * 109.46930 * 60.00232 * 7 6 5 31 31 H 1.09000 * 109.47312 * 300.00176 * 7 6 5 32 32 H 0.96999 * 120.00080 * 0.02562 * 8 7 6 33 33 H 1.07998 * 120.03713 * 0.02562 * 10 9 8 34 34 H 1.07994 * 119.96460 * 180.25714 * 11 10 9 35 35 H 1.08994 * 109.47299 * 30.02087 * 13 12 11 36 36 H 1.09002 * 109.47442 * 150.02258 * 13 12 11 37 37 H 0.97006 * 119.99840 * 180.02562 * 17 16 14 38 38 H 1.08009 * 119.96048 * 180.02562 * 22 12 11 39 39 H 1.08005 * 120.03673 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3272 -0.0005 5 7 3.4132 1.2741 0.0005 6 6 4.1456 2.5428 0.0000 7 6 5.6498 2.2633 0.0001 8 7 6.3823 3.5322 0.0001 9 6 7.7790 3.5322 -0.0003 10 6 8.4752 2.3301 0.0051 11 6 9.8562 2.3338 -0.0002 12 6 10.5460 3.5323 -0.0001 13 6 12.0530 3.5324 0.0004 14 6 12.5548 3.5321 1.4214 15 1 11.8527 3.5323 2.2421 16 6 13.9103 3.5326 1.6740 17 7 14.7652 3.5329 0.6747 18 14 14.5323 3.5330 3.4354 19 1 14.6976 2.1329 3.9022 20 1 15.8401 4.2335 3.4983 21 1 13.5535 4.2327 4.3058 22 6 9.8561 4.7308 -0.0001 23 6 8.4751 4.7343 -0.0007 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8700 -0.9353 0.0004 27 1 3.8982 0.4341 0.0005 28 1 3.8819 3.1149 0.8895 29 1 3.8825 3.1139 -0.8905 30 1 5.9132 1.6914 -0.8897 31 1 5.9132 1.6921 0.8903 32 1 5.8972 4.3722 0.0005 33 1 7.9371 1.3937 0.0092 34 1 10.3981 1.3996 -0.0002 35 1 12.4166 2.6427 -0.5134 36 1 12.4166 4.4226 -0.5130 37 1 15.7189 3.5330 0.8523 38 1 10.3979 5.6651 -0.0004 39 1 7.9369 5.6707 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169804332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -21.865040 kcal Electronic energy + Delta-G solvation = -19164.950304 eV Core-core repulsion = 16071.413964 eV Total energy + Delta-G solvation = -3093.536340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79795 -40.25493 -37.55419 -35.80848 -34.84088 -33.85102 -32.31679 -31.63422 -29.93711 -27.62169 -25.27429 -24.51489 -23.60605 -22.58008 -21.56408 -20.71579 -18.49302 -18.44355 -18.26909 -16.83400 -16.80890 -16.79922 -16.42087 -15.74738 -15.43091 -15.29841 -14.88170 -14.56239 -14.46451 -14.20785 -14.10438 -13.84175 -13.26863 -13.17927 -12.79432 -12.74460 -12.71683 -12.53717 -12.39387 -11.62450 -11.59195 -11.35921 -11.11066 -10.77941 -10.60120 -10.57458 -10.14860 -9.67374 -8.30916 -7.97366 -6.29364 0.46909 0.68202 0.88322 1.40224 1.41462 1.53062 1.94044 2.31900 2.41935 2.84094 3.13322 3.16365 3.66833 3.92809 4.05185 4.12447 4.24802 4.29301 4.40905 4.52191 4.73311 4.76406 4.78733 4.82270 4.86817 5.03467 5.20829 5.29932 5.35052 5.38031 5.40743 5.49438 5.55797 5.70831 5.81654 6.01558 6.24217 6.25193 6.50094 6.56284 6.84081 6.89540 7.18757 7.38818 8.92539 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.038419 B = 0.002439 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.637894 B =11477.257240 C =11733.166408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.225 4.225 3 C 0.534 3.466 4 O -0.596 6.596 5 N -0.711 5.711 6 C 0.117 3.883 7 C 0.124 3.876 8 N -0.745 5.745 9 C 0.197 3.803 10 C -0.190 4.190 11 C -0.090 4.090 12 C -0.123 4.123 13 C 0.062 3.938 14 C -0.524 4.524 15 H 0.053 0.947 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.091 4.091 23 C -0.190 4.190 24 H 0.094 0.906 25 H 0.150 0.850 26 H 0.162 0.838 27 H 0.420 0.580 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.406 0.594 33 H 0.141 0.859 34 H 0.112 0.888 35 H -0.001 1.001 36 H -0.003 1.003 37 H 0.264 0.736 38 H 0.109 0.891 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.534 -8.430 -1.580 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.246 4.246 3 C 0.324 3.676 4 O -0.479 6.479 5 N -0.363 5.363 6 C -0.007 4.007 7 C -0.001 4.001 8 N -0.378 5.378 9 C 0.095 3.905 10 C -0.212 4.212 11 C -0.109 4.109 12 C -0.125 4.125 13 C 0.025 3.975 14 C -0.562 4.562 15 H 0.071 0.929 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.110 4.110 23 C -0.212 4.212 24 H 0.112 0.888 25 H 0.168 0.832 26 H 0.179 0.821 27 H 0.258 0.742 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.241 0.759 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.017 0.983 36 H 0.015 0.985 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.822 -7.881 -1.622 28.003 hybrid contribution 1.111 0.235 0.638 1.303 sum -25.710 -7.645 -0.984 26.841 Atomic orbital electron populations 1.25013 0.95353 1.04096 0.87907 1.22907 0.96724 0.96378 1.08552 1.19378 0.82377 0.90665 0.75131 1.90783 1.69257 1.35362 1.52474 1.45614 1.06047 1.10038 1.74593 1.21240 0.90313 0.86697 1.02487 1.21338 0.89209 0.86956 1.02616 1.44182 1.01455 1.08170 1.83995 1.17617 0.83885 0.93418 0.95555 1.20708 0.93211 0.97217 1.10056 1.20861 0.94211 0.97113 0.98716 1.20172 0.96361 0.93991 1.01952 1.17995 0.88358 0.95265 0.95881 1.21447 0.91743 1.50313 0.92745 0.92907 1.25962 0.97183 0.94833 1.01762 1.70091 1.02433 1.51691 1.33010 0.85446 0.77639 0.78569 0.79398 1.19601 1.20544 1.19119 1.20833 0.94108 0.97194 0.98879 1.20672 0.93302 0.97257 1.09963 0.88795 0.83250 0.82082 0.74217 0.91638 0.91487 0.90820 0.91089 0.75858 0.84097 0.87018 0.98304 0.98470 0.92690 0.87249 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 14.31 66.65 0.95 0.23 16 2 C -0.23 -2.19 10.03 23.43 0.23 -1.95 16 3 C 0.53 9.27 7.76 86.57 0.67 9.94 16 4 O -0.60 -16.02 16.22 -4.08 -0.07 -16.08 16 5 N -0.71 -8.82 5.55 -466.70 -2.59 -11.41 16 6 C 0.12 1.72 5.79 86.38 0.50 2.22 16 7 C 0.12 1.81 5.03 86.38 0.43 2.24 16 8 N -0.74 -14.93 5.73 -339.39 -1.95 -16.88 16 9 C 0.20 5.61 6.65 38.22 0.25 5.87 16 10 C -0.19 -5.82 9.31 22.40 0.21 -5.61 16 11 C -0.09 -3.54 9.69 22.25 0.22 -3.33 16 12 C -0.12 -5.59 5.07 -19.84 -0.10 -5.70 16 13 C 0.06 3.43 5.10 29.10 0.15 3.58 16 14 C -0.52 -30.75 9.09 25.60 0.23 -30.52 16 15 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 16 C 0.00 0.01 5.46 84.66 0.46 0.47 16 17 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 18 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C -0.09 -3.66 9.69 22.25 0.22 -3.44 16 23 C -0.19 -6.03 9.90 22.40 0.22 -5.80 16 24 H 0.09 1.20 7.49 -2.91 -0.02 1.17 16 25 H 0.15 0.23 8.06 -2.91 -0.02 0.21 16 26 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 27 H 0.42 2.48 8.46 -92.71 -0.78 1.69 16 28 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 0.99 7.96 -2.38 -0.02 0.97 16 31 H 0.07 1.00 7.94 -2.39 -0.02 0.98 16 32 H 0.41 6.94 8.49 -92.71 -0.79 6.15 16 33 H 0.14 3.34 6.73 -2.91 -0.02 3.32 16 34 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 36 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 37 H 0.26 15.20 8.31 -92.70 -0.77 14.42 16 38 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -76.25 340.39 1.84 -74.40 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -0.52 Total: 11.65 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 4.65 Total: -31.79 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -4.25 Total: -85.28 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.07 Total: -16.08 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.25 1.84 -74.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169804332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.538 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds