Wall clock time and date at job start Mon Mar 30 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00377 * 2 1 4 4 N 1.46501 * 109.47158 * 124.99670 * 3 2 1 5 5 C 1.34773 * 119.99778 * 180.02562 * 4 3 2 6 6 O 1.21594 * 119.99991 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00003 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99734 * 359.97438 * 7 5 4 9 9 C 1.50704 * 109.47243 * 270.00249 * 8 7 5 10 10 H 1.07993 * 119.99709 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00148 * 180.02562 * 9 8 7 12 12 N 1.31525 * 119.99766 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00188 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46940 * 59.99608 * 13 11 9 15 15 H 1.48498 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47007 * 299.99498 * 13 11 9 17 17 C 1.46497 * 120.00021 * 180.02562 * 7 5 4 18 18 C 1.50707 * 109.47012 * 269.99478 * 17 7 5 19 19 C 1.38238 * 119.99792 * 90.00154 * 18 17 7 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98090 * 18 17 7 24 24 H 1.07998 * 120.00356 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99510 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99878 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46684 * 4.99593 * 3 2 1 28 28 H 1.09000 * 109.46690 * 244.99515 * 3 2 1 29 29 H 0.96995 * 120.00005 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.47515 * 30.00540 * 8 7 5 31 31 H 1.09004 * 109.47153 * 150.00388 * 8 7 5 32 32 H 0.96996 * 119.99503 * 180.02562 * 12 11 9 33 33 H 1.09005 * 109.47643 * 149.99939 * 17 7 5 34 34 H 1.09000 * 109.47513 * 29.99103 * 17 7 5 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7783 2.4090 1.3335 6 8 3.7144 3.3583 0.5763 7 7 4.6345 2.4334 2.3741 8 6 4.7119 1.2894 3.2859 9 6 3.7307 1.4789 4.4140 10 1 3.1117 2.3631 4.4484 11 6 3.6240 0.5237 5.4026 12 7 4.3782 -0.5530 5.3608 13 14 2.4072 0.7581 6.8004 14 1 1.0324 0.8583 6.2483 15 1 2.4858 -0.4014 7.7248 16 1 2.7360 2.0038 7.5392 17 6 5.4868 3.6044 2.5940 18 6 6.7873 3.4253 1.8537 19 6 6.9078 3.8705 0.5505 20 6 8.1008 3.7067 -0.1283 21 6 9.1734 3.0982 0.4962 22 6 9.0513 2.6481 1.7975 23 6 7.8597 2.8161 2.4779 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4024 -0.9314 29 1 3.0451 0.5744 1.7352 30 1 4.4700 0.3754 2.7436 31 1 5.7212 1.2152 3.6909 32 1 4.3028 -1.2251 6.0561 33 1 5.6876 3.7128 3.6599 34 1 4.9799 4.4969 2.2271 35 1 6.0698 4.3464 0.0628 36 1 8.1948 4.0542 -1.1465 37 1 10.1056 2.9706 -0.0341 38 1 9.8879 2.1688 2.2839 39 1 7.7658 2.4690 3.4963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202557714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:00 Heat of formation + Delta-G solvation = 15.305228 kcal Electronic energy + Delta-G solvation = -20915.060662 eV Core-core repulsion = 17823.136146 eV Total energy + Delta-G solvation = -3091.924517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59351 -38.53433 -35.63813 -34.80665 -32.84311 -32.29432 -30.84931 -30.52468 -27.39050 -26.40897 -24.54951 -22.92523 -22.09098 -21.05772 -20.03766 -18.94731 -17.16938 -16.79369 -16.15066 -15.94880 -15.14778 -14.85040 -14.61350 -14.55604 -14.44824 -13.49645 -13.41639 -13.06032 -12.82944 -12.69068 -12.32099 -12.15931 -11.99642 -11.61283 -11.31460 -11.02005 -10.95116 -10.86953 -10.73819 -10.53410 -10.18420 -9.78200 -9.60460 -9.24941 -8.59833 -8.55403 -8.42037 -8.39914 -7.58385 -6.19270 -4.27367 1.66150 1.76787 2.26351 3.23559 3.28424 3.31522 3.66487 4.00750 4.23428 4.32081 4.95293 5.02148 5.13266 5.22088 5.23061 5.27735 5.33849 5.52759 5.76292 5.80218 5.88937 5.95043 6.00123 6.07107 6.28097 6.40355 6.44001 6.65917 6.74934 6.78766 6.81174 6.82684 7.06554 7.15239 7.21782 7.36791 7.46113 7.76086 7.91401 8.05078 8.67859 8.90824 9.38554 9.46718 10.86561 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.006858 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.549810 B = 4081.761042 C = 5890.757292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.165 4.165 3 C 0.168 3.832 4 N -0.741 5.741 5 C 0.711 3.289 6 O -0.623 6.623 7 N -0.610 5.610 8 C 0.243 3.757 9 C -0.538 4.538 10 H 0.061 0.939 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.175 3.825 18 C -0.094 4.094 19 C -0.096 4.096 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.101 4.101 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.409 0.591 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 2.626 -8.128 8.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.183 4.183 3 C 0.043 3.957 4 N -0.399 5.399 5 C 0.412 3.588 6 O -0.505 6.505 7 N -0.343 5.343 8 C 0.123 3.877 9 C -0.577 4.577 10 H 0.079 0.921 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.051 3.949 18 C -0.096 4.096 19 C -0.115 4.115 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.120 4.120 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.246 0.754 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.444 3.114 -8.540 9.413 hybrid contribution -0.594 -0.582 1.185 1.448 sum 1.850 2.532 -7.355 7.996 Atomic orbital electron populations 1.23863 0.95774 1.01967 0.99791 1.23073 0.96222 0.98502 1.00495 1.20103 0.91337 0.94693 0.89520 1.45177 1.42383 1.20524 1.31819 1.15796 0.79070 0.82523 0.81380 1.90773 1.73762 1.36635 1.49321 1.47310 1.38927 1.19896 1.28180 1.19280 0.98154 0.82566 0.87710 1.21522 1.21837 1.06318 1.08033 0.92087 1.24947 0.95918 0.94930 0.97984 1.69922 1.39081 1.09420 1.34571 0.86569 0.81566 0.77673 0.81733 1.20152 1.21205 1.20132 1.20059 0.86697 0.89002 0.99179 1.20504 0.96024 0.97996 0.95054 1.21237 0.97279 0.98860 0.94117 1.21095 0.93646 1.00577 0.99600 1.21059 0.98505 0.99647 0.95340 1.21085 0.97785 1.00754 0.95016 1.21189 0.92677 0.97796 1.00337 0.88241 0.88387 0.86856 0.91896 0.91599 0.75374 0.95297 0.94482 0.92489 0.89663 0.90136 0.85534 0.86702 0.86797 0.86504 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 14.32 29.02 0.42 -1.68 16 2 C -0.16 -2.22 9.63 -36.02 -0.35 -2.57 16 3 C 0.17 2.71 6.11 -5.19 -0.03 2.68 16 4 N -0.74 -14.42 5.41 -66.41 -0.36 -14.78 16 5 C 0.71 15.46 8.28 -86.92 -0.72 14.74 16 6 O -0.62 -14.36 15.44 5.28 0.08 -14.28 16 7 N -0.61 -13.08 2.44 -182.18 -0.44 -13.52 16 8 C 0.24 5.73 4.93 -5.19 -0.03 5.70 16 9 C -0.54 -13.84 9.39 -34.44 -0.32 -14.16 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 13 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.17 3.33 5.53 -5.19 -0.03 3.31 16 18 C -0.09 -1.66 5.46 -104.62 -0.57 -2.23 16 19 C -0.10 -1.62 9.70 -39.58 -0.38 -2.01 16 20 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 21 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 22 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 23 C -0.10 -1.67 9.70 -39.58 -0.38 -2.06 16 24 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 25 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 26 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 27 H 0.06 1.03 7.79 -51.93 -0.40 0.63 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.41 8.17 6.19 -40.82 -0.25 7.92 16 30 H 0.03 0.71 6.36 -51.93 -0.33 0.38 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.09 1.58 8.02 -51.93 -0.42 1.16 16 34 H 0.08 1.53 7.36 -51.93 -0.38 1.15 16 35 H 0.13 2.23 7.57 -52.48 -0.40 1.83 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -28.91 337.92 -9.12 -38.04 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.52 Total: 10.85 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.69 Total: -3.42 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.07 Total: -51.71 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.91 -9.12 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202557714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.342 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds