Wall clock time and date at job start Mon Mar 30 2020 01:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00377 * 2 1 4 4 N 1.46501 * 109.47158 * 124.99670 * 3 2 1 5 5 C 1.34773 * 119.99778 * 180.02562 * 4 3 2 6 6 O 1.21594 * 119.99991 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00003 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99734 * 359.97438 * 7 5 4 9 9 C 1.50704 * 109.47243 * 270.00249 * 8 7 5 10 10 H 1.07993 * 119.99709 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00148 * 180.02562 * 9 8 7 12 12 N 1.31525 * 119.99766 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00188 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46940 * 59.99608 * 13 11 9 15 15 H 1.48498 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47007 * 299.99498 * 13 11 9 17 17 C 1.46497 * 120.00021 * 180.02562 * 7 5 4 18 18 C 1.50707 * 109.47012 * 269.99478 * 17 7 5 19 19 C 1.38238 * 119.99792 * 90.00154 * 18 17 7 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98090 * 18 17 7 24 24 H 1.07998 * 120.00356 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99510 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99878 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46684 * 4.99593 * 3 2 1 28 28 H 1.09000 * 109.46690 * 244.99515 * 3 2 1 29 29 H 0.96995 * 120.00005 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.47515 * 30.00540 * 8 7 5 31 31 H 1.09004 * 109.47153 * 150.00388 * 8 7 5 32 32 H 0.96996 * 119.99503 * 180.02562 * 12 11 9 33 33 H 1.09005 * 109.47643 * 149.99939 * 17 7 5 34 34 H 1.09000 * 109.47513 * 29.99103 * 17 7 5 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7783 2.4090 1.3335 6 8 3.7144 3.3583 0.5763 7 7 4.6345 2.4334 2.3741 8 6 4.7119 1.2894 3.2859 9 6 3.7307 1.4789 4.4140 10 1 3.1117 2.3631 4.4484 11 6 3.6240 0.5237 5.4026 12 7 4.3782 -0.5530 5.3608 13 14 2.4072 0.7581 6.8004 14 1 1.0324 0.8583 6.2483 15 1 2.4858 -0.4014 7.7248 16 1 2.7360 2.0038 7.5392 17 6 5.4868 3.6044 2.5940 18 6 6.7873 3.4253 1.8537 19 6 6.9078 3.8705 0.5505 20 6 8.1008 3.7067 -0.1283 21 6 9.1734 3.0982 0.4962 22 6 9.0513 2.6481 1.7975 23 6 7.8597 2.8161 2.4779 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4024 -0.9314 29 1 3.0451 0.5744 1.7352 30 1 4.4700 0.3754 2.7436 31 1 5.7212 1.2152 3.6909 32 1 4.3028 -1.2251 6.0561 33 1 5.6876 3.7128 3.6599 34 1 4.9799 4.4969 2.2271 35 1 6.0698 4.3464 0.0628 36 1 8.1948 4.0542 -1.1465 37 1 10.1056 2.9706 -0.0341 38 1 9.8879 2.1688 2.2839 39 1 7.7658 2.4690 3.4963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202557714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:59 Heat of formation + Delta-G solvation = 0.454521 kcal Electronic energy + Delta-G solvation = -20915.704637 eV Core-core repulsion = 17823.136146 eV Total energy + Delta-G solvation = -3092.568492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19318 -39.84989 -37.05454 -36.48266 -34.66164 -33.73153 -32.23200 -31.73316 -29.25464 -27.79311 -26.01332 -24.76494 -23.34587 -22.35516 -21.28130 -20.45219 -18.81601 -18.58515 -17.66188 -17.44074 -16.56827 -16.40735 -16.16648 -15.89475 -15.84563 -14.95390 -14.89566 -14.46336 -14.22928 -14.00018 -13.95343 -13.52753 -13.38751 -13.32918 -13.00285 -12.73474 -12.56242 -12.14879 -12.12282 -11.98783 -11.78252 -11.68812 -11.19059 -10.60084 -10.52243 -10.00133 -9.77297 -9.67911 -9.28546 -8.19542 -6.35161 0.42455 0.54834 1.20110 1.42522 1.43380 1.51161 2.14758 2.30357 2.43097 2.96173 3.09490 3.33541 3.89875 3.97384 3.98073 4.19557 4.20629 4.33332 4.37007 4.58969 4.64606 4.72553 4.79304 4.81174 4.89486 4.99290 5.14510 5.16636 5.21583 5.58327 5.60230 5.62026 5.63899 5.65867 5.75373 5.82647 5.85999 6.05510 6.16731 6.23008 6.69840 7.11463 7.38173 7.74283 8.84651 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.006858 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.549810 B = 4081.761042 C = 5890.757292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.184 4.184 3 C 0.167 3.833 4 N -0.740 5.740 5 C 0.702 3.298 6 O -0.640 6.640 7 N -0.612 5.612 8 C 0.261 3.739 9 C -0.547 4.547 10 H 0.049 0.951 11 C 0.026 3.974 12 N -0.916 5.916 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.274 1.274 17 C 0.175 3.825 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.117 4.117 24 H 0.123 0.877 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.405 0.595 30 H 0.020 0.980 31 H 0.023 0.977 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 2.128 -8.563 9.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.203 4.203 3 C 0.044 3.956 4 N -0.396 5.396 5 C 0.403 3.597 6 O -0.524 6.524 7 N -0.345 5.345 8 C 0.140 3.860 9 C -0.586 4.586 10 H 0.067 0.933 11 C -0.175 4.175 12 N -0.555 5.555 13 Si 0.781 3.219 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.199 1.199 17 C 0.051 3.949 18 C -0.113 4.113 19 C -0.131 4.131 20 C -0.148 4.148 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.136 4.136 24 H 0.141 0.859 25 H 0.121 0.879 26 H 0.138 0.862 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.242 0.758 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.731 2.622 -8.990 9.754 hybrid contribution -0.671 -0.411 1.267 1.492 sum 2.060 2.211 -7.722 8.292 Atomic orbital electron populations 1.24130 0.95186 1.03358 0.96708 1.22959 0.96753 0.97321 1.03224 1.20241 0.90837 0.96264 0.88273 1.45324 1.42291 1.19558 1.32437 1.16015 0.79381 0.82957 0.81312 1.90748 1.74367 1.37393 1.49854 1.47322 1.39436 1.19925 1.27840 1.18911 0.96744 0.82973 0.87352 1.21643 1.22080 1.05953 1.08910 0.93259 1.25602 0.97329 0.94603 0.99968 1.70004 1.40176 1.09997 1.35357 0.85647 0.79489 0.77675 0.79071 1.19898 1.20556 1.19931 1.20093 0.87437 0.87954 0.99371 1.20355 0.95553 0.99791 0.95624 1.21209 0.98104 0.99761 0.94027 1.21415 0.92821 0.99871 1.00669 1.21482 0.99502 0.97806 0.94944 1.21424 0.97545 1.00086 0.95471 1.21240 0.93494 0.98435 1.00383 0.85886 0.87892 0.86160 0.92405 0.91705 0.75788 0.96244 0.95908 0.92274 0.89890 0.90760 0.87062 0.84098 0.83103 0.83882 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 14.32 67.78 0.97 -2.43 16 2 C -0.18 -4.80 9.63 25.65 0.25 -4.55 16 3 C 0.17 5.42 6.11 85.63 0.52 5.94 16 4 N -0.74 -29.35 5.41 -482.29 -2.61 -31.97 16 5 C 0.70 31.40 8.28 179.06 1.48 32.88 16 6 O -0.64 -30.33 15.44 -4.01 -0.06 -30.39 16 7 N -0.61 -27.16 2.44 -848.55 -2.07 -29.23 16 8 C 0.26 12.67 4.93 85.64 0.42 13.09 16 9 C -0.55 -28.56 9.39 25.60 0.24 -28.32 16 10 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 11 C 0.03 1.34 5.46 84.65 0.46 1.80 16 12 N -0.92 -49.71 13.29 21.45 0.28 -49.42 16 13 Si 0.96 41.69 29.54 68.60 2.03 43.71 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 C 0.17 6.97 5.53 85.64 0.47 7.45 16 18 C -0.11 -4.04 5.46 -19.86 -0.11 -4.15 16 19 C -0.11 -3.81 9.70 22.27 0.22 -3.59 16 20 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 21 C -0.12 -2.93 10.05 22.27 0.22 -2.70 16 22 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 23 C -0.12 -3.87 9.70 22.27 0.22 -3.65 16 24 H 0.12 2.13 8.06 -2.91 -0.02 2.10 16 25 H 0.10 2.14 7.84 -2.91 -0.02 2.12 16 26 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.06 1.91 7.79 -2.39 -0.02 1.89 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.41 16.56 6.19 -92.71 -0.57 15.99 16 30 H 0.02 0.99 6.36 -2.39 -0.02 0.97 16 31 H 0.02 1.17 8.07 -2.38 -0.02 1.15 16 32 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 33 H 0.08 3.24 8.02 -2.38 -0.02 3.22 16 34 H 0.07 2.99 7.36 -2.39 -0.02 2.97 16 35 H 0.11 4.05 7.57 -2.91 -0.02 4.03 16 36 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 39 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -61.58 337.92 3.84 -57.74 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.46 Total: 34.34 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.82 Total: 5.21 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -4.40 Total: -110.62 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.06 Total: -30.39 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -61.58 3.84 -57.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202557714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.194 kcal (2) G-P(sol) polarization free energy of solvation -61.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds