Wall clock time and date at job start Mon Mar 30 2020 01:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 6 6 F 1.39899 * 109.47162 * 305.00618 * 4 2 1 7 7 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 8 8 O 1.21281 * 119.99593 * 315.00426 * 7 4 2 9 9 N 1.34770 * 120.00023 * 135.00310 * 7 4 2 10 10 C 1.46504 * 119.99948 * 180.02562 * 9 7 4 11 11 H 1.09003 * 110.88468 * 34.29613 * 10 9 7 12 12 C 1.54905 * 111.00190 * 270.41746 * 10 9 7 13 13 N 1.47474 * 104.81161 * 204.94542 * 12 10 9 14 14 C 1.36933 * 125.63078 * 204.04548 * 13 12 10 15 15 H 1.07999 * 120.00296 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99985 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47397 * 89.99591 * 18 16 14 20 20 H 1.48502 * 109.46979 * 210.00266 * 18 16 14 21 21 H 1.48502 * 109.46879 * 329.99865 * 18 16 14 22 22 C 1.47025 * 108.71765 * 24.07437 * 13 12 10 23 23 C 1.54325 * 107.27191 * 358.97181 * 22 13 12 24 24 H 1.09004 * 110.71478 * 219.44666 * 23 22 13 25 25 O 1.42893 * 110.71834 * 96.17574 * 23 22 13 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 0.96996 * 120.00144 * 359.97438 * 9 7 4 34 34 H 1.08999 * 110.36966 * 323.75220 * 12 10 9 35 35 H 1.09005 * 110.36891 * 86.07648 * 12 10 9 36 36 H 0.97000 * 120.00439 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.87707 * 239.55505 * 22 13 12 38 38 H 1.08998 * 109.88369 * 118.39165 * 22 13 12 39 39 H 0.96698 * 114.00396 * 66.47931 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1263 -0.6442 1.2952 6 9 1.4821 -0.1314 2.3886 7 6 1.6414 -2.1733 1.1890 8 8 0.5143 -2.4796 0.8622 9 7 2.5373 -3.1314 1.4982 10 6 2.1499 -4.5431 1.4391 11 1 1.4384 -4.7173 0.6319 12 6 1.5763 -5.0187 2.7971 13 7 1.8064 -6.4753 2.8142 14 6 1.0952 -7.3867 3.5480 15 1 0.2866 -7.0559 4.1830 16 6 1.4134 -8.7360 3.4757 17 7 2.3990 -9.1392 2.7022 18 14 0.4427 -9.9795 4.4761 19 1 -0.7122 -10.4637 3.6781 20 1 1.3191 -11.1265 4.8250 21 1 -0.0504 -9.3368 5.7207 22 6 2.9261 -6.7866 1.9136 23 6 3.3956 -5.4558 1.2891 24 1 3.6498 -5.5916 0.2379 25 8 4.5047 -4.9207 2.0140 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.4388 -2.8864 1.7592 34 1 2.1068 -4.5415 3.6211 35 1 0.5097 -4.8018 2.8554 36 1 2.6212 -10.0820 2.6513 37 1 2.5931 -7.4669 1.1297 38 1 3.7413 -7.2391 2.4783 39 1 5.3089 -5.4541 1.9526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220174203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:15 Heat of formation + Delta-G solvation = -110.893727 kcal Electronic energy + Delta-G solvation = -22125.527250 eV Core-core repulsion = 18597.361112 eV Total energy + Delta-G solvation = -3528.166139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.93559 -39.76357 -38.02537 -35.41543 -34.87271 -34.08594 -31.74906 -29.02780 -27.93470 -27.23664 -26.57243 -24.40839 -21.52197 -20.59084 -20.08029 -20.01666 -17.86296 -17.18820 -17.07437 -16.44658 -15.92477 -15.23147 -14.90813 -14.64371 -14.24041 -13.95241 -13.83192 -13.31148 -13.18692 -13.04957 -12.76558 -12.62597 -12.29081 -12.22058 -12.08432 -11.33375 -11.31276 -11.08675 -10.99081 -10.86847 -10.80947 -10.55313 -10.49625 -10.12843 -9.83883 -9.47248 -9.30526 -8.79890 -8.67185 -6.89929 -5.76841 -3.09835 2.51443 3.06563 3.39557 3.44658 3.46609 4.24693 4.36007 4.47659 4.50561 4.64488 4.70183 5.06567 5.19998 5.23775 5.32027 5.37571 5.50902 5.53745 5.66824 5.72817 5.80796 5.83676 5.88707 5.99285 6.13498 6.15867 6.37371 6.62308 6.63997 6.88181 7.29217 7.41240 7.61218 7.72109 8.01250 8.17266 8.27406 9.16017 9.75943 10.40052 11.35518 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.033174 B = 0.004145 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.840179 B = 6754.225025 C = 7184.481075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.087 3.913 5 H 0.097 0.903 6 F -0.189 7.189 7 C 0.488 3.512 8 O -0.518 6.518 9 N -0.698 5.698 10 C 0.136 3.864 11 H 0.105 0.895 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.225 4.225 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.927 5.927 18 Si 0.915 3.085 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.062 0.938 25 O -0.568 6.568 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.408 0.592 34 H 0.027 0.973 35 H 0.045 0.955 36 H 0.253 0.747 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 16.590 -6.760 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.047 3.953 5 H 0.115 0.885 6 F -0.169 7.169 7 C 0.271 3.729 8 O -0.394 6.394 9 N -0.350 5.350 10 C 0.031 3.969 11 H 0.123 0.877 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.353 4.353 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.575 5.575 18 Si 0.746 3.254 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.029 3.971 23 C 0.008 3.992 24 H 0.080 0.920 25 O -0.374 6.374 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.244 0.756 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.370 16.592 -6.773 18.235 hybrid contribution 0.448 -1.073 0.607 1.311 sum 3.817 15.519 -6.166 17.130 Atomic orbital electron populations 1.22129 0.93173 1.05572 1.01412 1.21542 0.98725 0.96633 0.95904 1.21859 1.00866 0.95137 1.02723 1.21618 0.98990 0.89992 0.84689 0.88530 1.92862 1.87568 1.84530 1.51984 1.20922 0.85969 0.87791 0.78184 1.90632 1.19621 1.82735 1.46442 1.45876 1.15307 1.06280 1.67494 1.22421 0.95793 0.77979 1.00717 0.87673 1.21836 0.98189 0.86282 0.93285 1.44290 1.36805 1.00146 1.51509 1.19108 1.10768 0.86730 1.18721 0.90228 1.24790 0.98751 0.96877 1.00046 1.69907 1.30977 1.14627 1.41994 0.86060 0.78935 0.80909 0.79542 1.21518 1.21657 1.20632 1.21871 0.91569 0.90027 0.93662 1.23508 0.85843 0.95552 0.94288 0.92027 1.86238 1.22499 1.53358 1.75346 0.88594 0.92936 0.92505 0.89420 0.91945 0.92464 0.91845 0.75587 0.95565 0.93659 0.93713 0.92597 0.92820 0.77168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 8.71 37.16 0.32 -1.64 16 2 C -0.11 -1.11 2.75 -90.62 -0.25 -1.36 16 3 C -0.15 -1.19 9.11 37.16 0.34 -0.85 16 4 C 0.09 1.00 3.46 -27.88 -0.10 0.91 16 5 H 0.10 0.82 7.99 -51.93 -0.42 0.40 16 6 F -0.19 -2.58 16.03 2.25 0.04 -2.55 16 7 C 0.49 7.33 7.17 -10.99 -0.08 7.25 16 8 O -0.52 -9.49 13.49 5.56 0.07 -9.42 16 9 N -0.70 -10.40 5.18 -51.73 -0.27 -10.67 16 10 C 0.14 2.48 3.25 -65.78 -0.21 2.27 16 11 H 0.11 2.02 7.63 -51.93 -0.40 1.62 16 12 C 0.13 2.90 6.92 -2.50 -0.02 2.89 16 13 N -0.60 -15.48 3.40 -170.03 -0.58 -16.06 16 14 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.93 -26.71 10.31 55.49 0.57 -26.14 16 18 Si 0.92 22.21 29.55 -169.99 -5.02 17.18 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.15 3.57 5.14 -3.06 -0.02 3.55 16 23 C 0.07 1.19 4.20 -24.90 -0.10 1.08 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 O -0.57 -8.71 12.13 -35.23 -0.43 -9.14 16 26 H 0.10 1.40 5.25 -51.93 -0.27 1.13 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.69 7.69 -51.93 -0.40 0.29 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.53 7.93 -51.93 -0.41 0.12 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.41 5.27 7.46 -40.82 -0.30 4.96 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.06 1.42 7.39 -51.93 -0.38 1.04 16 38 H 0.05 1.36 7.43 -51.93 -0.39 0.97 16 39 H 0.38 4.46 9.12 45.56 0.42 4.88 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -32.27 318.90 -6.23 -38.50 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.06 Total: 6.23 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.36 Total: 7.24 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.27 Total: -52.86 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.35 Total: -18.56 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.27 -6.23 -38.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220174203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.395 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds