Wall clock time and date at job start Mon Mar 30 2020 01:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 6 6 F 1.39899 * 109.47162 * 305.00618 * 4 2 1 7 7 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 8 8 O 1.21281 * 119.99593 * 315.00426 * 7 4 2 9 9 N 1.34770 * 120.00023 * 135.00310 * 7 4 2 10 10 C 1.46504 * 119.99948 * 180.02562 * 9 7 4 11 11 H 1.09003 * 110.88468 * 34.29613 * 10 9 7 12 12 C 1.54905 * 111.00190 * 270.41746 * 10 9 7 13 13 N 1.47474 * 104.81161 * 204.94542 * 12 10 9 14 14 C 1.36933 * 125.63078 * 204.04548 * 13 12 10 15 15 H 1.07999 * 120.00296 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99985 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47397 * 89.99591 * 18 16 14 20 20 H 1.48502 * 109.46979 * 210.00266 * 18 16 14 21 21 H 1.48502 * 109.46879 * 329.99865 * 18 16 14 22 22 C 1.47025 * 108.71765 * 24.07437 * 13 12 10 23 23 C 1.54325 * 107.27191 * 358.97181 * 22 13 12 24 24 H 1.09004 * 110.71478 * 219.44666 * 23 22 13 25 25 O 1.42893 * 110.71834 * 96.17574 * 23 22 13 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 0.96996 * 120.00144 * 359.97438 * 9 7 4 34 34 H 1.08999 * 110.36966 * 323.75220 * 12 10 9 35 35 H 1.09005 * 110.36891 * 86.07648 * 12 10 9 36 36 H 0.97000 * 120.00439 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.87707 * 239.55505 * 22 13 12 38 38 H 1.08998 * 109.88369 * 118.39165 * 22 13 12 39 39 H 0.96698 * 114.00396 * 66.47931 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1263 -0.6442 1.2952 6 9 1.4821 -0.1314 2.3886 7 6 1.6414 -2.1733 1.1890 8 8 0.5143 -2.4796 0.8622 9 7 2.5373 -3.1314 1.4982 10 6 2.1499 -4.5431 1.4391 11 1 1.4384 -4.7173 0.6319 12 6 1.5763 -5.0187 2.7971 13 7 1.8064 -6.4753 2.8142 14 6 1.0952 -7.3867 3.5480 15 1 0.2866 -7.0559 4.1830 16 6 1.4134 -8.7360 3.4757 17 7 2.3990 -9.1392 2.7022 18 14 0.4427 -9.9795 4.4761 19 1 -0.7122 -10.4637 3.6781 20 1 1.3191 -11.1265 4.8250 21 1 -0.0504 -9.3368 5.7207 22 6 2.9261 -6.7866 1.9136 23 6 3.3956 -5.4558 1.2891 24 1 3.6498 -5.5916 0.2379 25 8 4.5047 -4.9207 2.0140 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.4388 -2.8864 1.7592 34 1 2.1068 -4.5415 3.6211 35 1 0.5097 -4.8018 2.8554 36 1 2.6212 -10.0820 2.6513 37 1 2.5931 -7.4669 1.1297 38 1 3.7413 -7.2391 2.4783 39 1 5.3089 -5.4541 1.9526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220174203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:15 Heat of formation + Delta-G solvation = -135.629326 kcal Electronic energy + Delta-G solvation = -22126.599866 eV Core-core repulsion = 18597.361112 eV Total energy + Delta-G solvation = -3529.238755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.93718 -41.08749 -39.51303 -36.47669 -36.27802 -35.50451 -33.66061 -30.62844 -29.41102 -28.08228 -27.98839 -26.27365 -22.83062 -22.17437 -21.57123 -21.07226 -19.35411 -18.63751 -18.42795 -17.65545 -16.90656 -16.89825 -16.47271 -16.02324 -15.77443 -15.37089 -14.83948 -14.76154 -14.54934 -14.39865 -14.16331 -13.96289 -13.77130 -13.20733 -13.13084 -12.91529 -12.84684 -12.76092 -12.31847 -12.19275 -12.12782 -11.92451 -11.88925 -11.86364 -11.62837 -10.90473 -10.78506 -10.57624 -10.15873 -8.97250 -7.90821 -5.26761 1.31773 1.44617 1.46249 1.54912 1.87226 2.46694 3.12048 3.28217 3.35731 3.47457 3.67627 3.70763 3.82174 3.83612 3.92732 4.23053 4.29286 4.46157 4.47040 4.59977 4.64282 4.79125 4.82269 4.92764 5.01330 5.07331 5.15333 5.30452 5.36896 5.40773 5.45575 5.60450 5.63446 6.12593 6.43412 6.86194 7.04959 7.11215 7.68484 8.31826 9.18932 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.033174 B = 0.004145 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.840179 B = 6754.225025 C = 7184.481075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.089 3.911 5 H 0.139 0.861 6 F -0.201 7.201 7 C 0.484 3.516 8 O -0.555 6.555 9 N -0.686 5.686 10 C 0.150 3.850 11 H 0.095 0.905 12 C 0.131 3.869 13 N -0.622 5.622 14 C -0.251 4.251 15 H 0.075 0.925 16 C -0.058 4.058 17 N -0.946 5.946 18 Si 0.980 3.020 19 H -0.285 1.285 20 H -0.288 1.288 21 H -0.273 1.273 22 C 0.158 3.842 23 C 0.094 3.906 24 H 0.096 0.904 25 O -0.564 6.564 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.421 0.579 34 H 0.023 0.977 35 H 0.026 0.974 36 H 0.250 0.750 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 18.136 -7.384 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.127 4.127 3 C -0.201 4.201 4 C 0.050 3.950 5 H 0.157 0.843 6 F -0.182 7.182 7 C 0.269 3.731 8 O -0.433 6.433 9 N -0.339 5.339 10 C 0.043 3.957 11 H 0.113 0.887 12 C 0.004 3.996 13 N -0.349 5.349 14 C -0.379 4.379 15 H 0.093 0.907 16 C -0.251 4.251 17 N -0.595 5.595 18 Si 0.807 3.193 19 H -0.212 1.212 20 H -0.214 1.214 21 H -0.198 1.198 22 C 0.033 3.967 23 C 0.034 3.966 24 H 0.114 0.886 25 O -0.373 6.373 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.784 18.179 -7.393 20.199 hybrid contribution -0.001 -1.541 0.825 1.747 sum 4.783 16.638 -6.569 18.516 Atomic orbital electron populations 1.22078 0.94912 1.03568 1.01744 1.21606 0.97283 0.98225 0.95587 1.21833 1.02121 0.93160 1.02938 1.21853 1.01273 0.87065 0.84797 0.84300 1.92841 1.88058 1.84435 1.52878 1.21683 0.85244 0.89272 0.76898 1.90643 1.21287 1.83617 1.47778 1.45724 1.16047 1.04741 1.67393 1.21989 0.95836 0.80162 0.97703 0.88674 1.21880 0.97283 0.84780 0.95654 1.44568 1.37397 1.01344 1.51576 1.19412 1.11266 0.87871 1.19395 0.90738 1.25591 0.99849 0.98436 1.01231 1.70100 1.31927 1.14627 1.42831 0.85070 0.77531 0.78360 0.78296 1.21163 1.21434 1.19838 1.21756 0.89929 0.92856 0.92189 1.23122 0.86116 0.91825 0.95535 0.88590 1.86200 1.22707 1.53256 1.75163 0.91641 0.91282 0.93525 0.88207 0.92705 0.90430 0.90715 0.73996 0.95943 0.95578 0.94051 0.95594 0.95461 0.74936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 8.71 71.98 0.63 -3.16 16 2 C -0.11 -1.93 2.75 -10.79 -0.03 -1.96 16 3 C -0.14 -1.81 9.11 71.98 0.66 -1.15 16 4 C 0.09 1.83 3.46 29.85 0.10 1.94 16 5 H 0.14 1.72 7.99 -2.39 -0.02 1.70 16 6 F -0.20 -5.17 16.03 44.97 0.72 -4.45 16 7 C 0.48 13.87 7.17 87.66 0.63 14.50 16 8 O -0.56 -20.42 13.49 -3.03 -0.04 -20.46 16 9 N -0.69 -19.11 5.18 -435.97 -2.26 -21.37 16 10 C 0.15 5.34 3.25 46.38 0.15 5.49 16 11 H 0.10 3.64 7.63 -2.39 -0.02 3.62 16 12 C 0.13 5.89 6.92 86.84 0.60 6.49 16 13 N -0.62 -32.85 3.40 -691.85 -2.35 -35.20 16 14 C -0.25 -14.54 10.28 84.04 0.86 -13.68 16 15 H 0.07 4.25 7.83 -2.91 -0.02 4.22 16 16 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 17 N -0.95 -55.59 10.31 21.65 0.22 -55.37 16 18 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 22 C 0.16 7.43 5.14 86.73 0.45 7.87 16 23 C 0.09 3.14 4.20 31.78 0.13 3.27 16 24 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 25 O -0.56 -15.77 12.13 -148.98 -1.81 -17.58 16 26 H 0.06 1.93 5.25 -2.39 -0.01 1.92 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.12 7.69 -2.38 -0.02 1.10 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 0.79 7.93 -2.39 -0.02 0.77 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 9.51 7.46 -92.71 -0.69 8.82 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.03 1.36 7.39 -2.39 -0.02 1.34 16 38 H 0.03 1.41 7.43 -2.39 -0.02 1.39 16 39 H 0.40 8.19 9.12 -74.06 -0.68 7.51 16 Total: -1.00 -72.27 318.90 0.86 -71.41 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -0.30 Total: 18.04 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 4.64 Total: 16.79 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -4.38 Total: -111.94 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.85 Total: -38.04 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.72 Total: -4.45 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -72.27 0.86 -71.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220174203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.218 kcal (2) G-P(sol) polarization free energy of solvation -72.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds