Wall clock time and date at job start Mon Mar 30 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46838 * 2 1 4 4 C 1.53002 * 109.47171 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47428 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00044 * 269.49961 * 5 4 3 7 7 H 1.07998 * 119.99701 * 325.90181 * 6 5 4 8 8 C 1.38807 * 120.00344 * 145.90360 * 6 5 4 9 9 N 1.31620 * 119.99777 * 336.77524 * 8 6 5 10 10 Si 1.86796 * 120.00482 * 156.77456 * 8 6 5 11 11 H 1.48505 * 109.47000 * 59.99477 * 10 8 6 12 12 H 1.48494 * 109.47603 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47200 * 300.00174 * 10 8 6 14 14 C 1.46497 * 120.00241 * 89.49580 * 5 4 3 15 15 C 1.50701 * 109.46898 * 90.00060 * 14 5 4 16 16 C 1.38727 * 119.76126 * 269.97692 * 15 14 5 17 17 C 1.37687 * 120.42084 * 180.02562 * 16 15 14 18 18 C 1.39586 * 119.72820 * 0.04347 * 17 16 15 19 19 N 1.36058 * 133.80578 * 179.97438 * 18 17 16 20 20 C 1.29903 * 108.80552 * 179.97438 * 19 18 17 21 21 O 1.34241 * 110.28442 * 0.26763 * 20 19 18 22 22 C 1.35113 * 108.15961 * 359.56580 * 21 20 19 23 23 C 1.37903 * 119.76349 * 90.00537 * 15 14 5 24 24 H 1.09006 * 109.47320 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46940 * 299.99207 * 1 2 3 26 26 H 1.08998 * 109.47777 * 59.99564 * 1 2 3 27 27 H 1.09003 * 109.46940 * 240.00793 * 2 1 3 28 28 H 1.08992 * 109.47376 * 120.00544 * 2 1 3 29 29 H 1.09003 * 109.47204 * 60.00467 * 3 2 1 30 30 H 1.08999 * 109.47948 * 300.00365 * 3 2 1 31 31 H 1.09003 * 109.46813 * 60.00059 * 4 3 2 32 32 H 1.09006 * 109.47245 * 300.00764 * 4 3 2 33 33 H 0.97000 * 120.00460 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47332 * 330.00356 * 14 5 4 35 35 H 1.08998 * 109.47778 * 209.99945 * 14 5 4 36 36 H 1.07998 * 119.78857 * 0.02650 * 16 15 14 37 37 H 1.08001 * 120.13343 * 179.97438 * 17 16 15 38 38 H 1.07994 * 124.86258 * 180.02562 * 20 19 18 39 39 H 1.08002 * 120.06435 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2957 3.4666 -1.1856 7 1 4.6632 2.9119 -2.0364 8 6 4.0643 4.8309 -1.2940 9 7 3.2212 5.4225 -0.4744 10 14 4.9492 5.8274 -2.6028 11 1 4.6041 5.2971 -3.9464 12 1 4.5307 7.2491 -2.5099 13 1 6.4161 5.7280 -2.3933 14 6 4.2924 3.5174 1.2689 15 6 5.7123 3.2816 1.7156 16 6 6.0086 2.1922 2.5219 17 6 7.3010 1.9642 2.9383 18 6 8.3184 2.8360 2.5468 19 7 9.6575 2.8870 2.7823 20 6 10.1508 3.9224 2.1723 21 8 9.1803 4.5885 1.5269 22 6 8.0146 3.9366 1.7312 23 6 6.7075 4.1506 1.3205 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 3.0591 6.3758 -0.5503 34 1 3.6057 3.1350 2.0242 35 1 4.1265 4.5863 1.1348 36 1 5.2206 1.5188 2.8248 37 1 7.5265 1.1149 3.5663 38 1 11.1920 4.2087 2.1858 39 1 6.4693 4.9966 0.6928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232944842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:45 Heat of formation + Delta-G solvation = 43.694131 kcal Electronic energy + Delta-G solvation = -20977.673205 eV Core-core repulsion = 17886.979724 eV Total energy + Delta-G solvation = -3090.693481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.80133 -38.01765 -36.08425 -34.45916 -33.84865 -31.42438 -30.30163 -29.91089 -27.77667 -25.75022 -23.91706 -23.26586 -21.88207 -21.37671 -20.81005 -19.94540 -17.51084 -17.14849 -16.52009 -16.25518 -15.29381 -14.85927 -14.77545 -14.09588 -13.84255 -13.48045 -13.44196 -13.38996 -12.98951 -12.35052 -12.03611 -11.86655 -11.75208 -11.30051 -11.18698 -10.95242 -10.91960 -10.82889 -10.61479 -10.48151 -10.30661 -10.18228 -9.97399 -9.93684 -9.70257 -8.60369 -8.32472 -7.85197 -6.74693 -5.91308 -3.41571 1.16780 1.74180 2.83549 2.98629 3.31473 3.38111 3.41732 4.13118 4.23675 4.42257 4.97268 5.19595 5.29633 5.39772 5.43842 5.56189 5.63663 5.69391 5.73749 5.82209 5.93232 6.02433 6.19251 6.32998 6.34339 6.37944 6.41356 6.44639 6.52103 6.60190 6.66282 6.73526 6.85745 7.03285 7.16170 7.17513 7.25030 7.56303 7.73217 7.92363 8.38640 9.05392 9.69128 10.24905 11.09197 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.006477 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.187898 B = 4321.758264 C = 5939.403535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.133 4.133 4 C 0.148 3.852 5 N -0.573 5.573 6 C -0.253 4.253 7 H 0.062 0.938 8 C 0.012 3.988 9 N -0.881 5.881 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.281 1.281 14 C 0.170 3.830 15 C -0.042 4.042 16 C -0.115 4.115 17 C -0.071 4.071 18 C -0.007 4.007 19 N -0.485 5.485 20 C 0.203 3.797 21 O -0.223 6.223 22 C 0.015 3.985 23 C -0.081 4.081 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.257 0.743 34 H 0.042 0.958 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.247 0.753 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -5.095 5.257 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.173 4.173 4 C 0.022 3.978 5 N -0.291 5.291 6 C -0.383 4.383 7 H 0.080 0.920 8 C -0.189 4.189 9 N -0.523 5.523 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.207 1.207 14 C 0.044 3.956 15 C -0.046 4.046 16 C -0.135 4.135 17 C -0.091 4.091 18 C -0.118 4.118 19 N -0.215 5.215 20 C -0.028 4.028 21 O -0.114 6.114 22 C -0.035 4.035 23 C -0.101 4.101 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.263 0.737 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.518 -5.344 5.583 8.952 hybrid contribution 0.394 1.070 -1.133 1.607 sum 4.912 -4.274 4.450 7.887 Atomic orbital electron populations 1.21760 0.96773 1.00418 1.01690 1.21526 0.95121 0.98568 1.00907 1.22150 0.98888 0.94029 1.02245 1.20959 0.91542 0.86880 0.98442 1.43785 1.73309 1.10334 1.01681 1.19049 1.37412 0.91437 0.90400 0.91988 1.25037 0.97200 0.98499 0.98130 1.69956 1.32092 1.10633 1.39595 0.86567 0.80280 0.79305 0.81990 1.20590 1.21436 1.20743 1.20128 0.85863 1.02959 0.86655 1.21234 0.99559 0.91867 0.91925 1.21023 0.95394 0.98118 0.98927 1.20161 0.90546 0.98006 1.00341 1.19683 0.90590 0.98567 1.02927 1.70476 1.07995 1.19976 1.23026 1.27979 0.95574 0.88142 0.91118 1.84498 1.16011 1.48994 1.61855 1.20515 0.87336 0.94123 1.01515 1.19869 0.86224 1.02316 1.01713 0.93719 0.93078 0.92942 0.92723 0.92925 0.92923 0.91786 0.93906 0.94725 0.93264 0.94008 0.87145 0.85396 0.85713 0.73697 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.80 5.93 -26.73 -0.16 -1.96 16 3 C -0.13 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.15 2.91 5.67 -4.04 -0.02 2.88 16 5 N -0.57 -13.19 2.43 -174.61 -0.42 -13.61 16 6 C -0.25 -6.52 9.48 -15.06 -0.14 -6.66 16 7 H 0.06 1.63 7.93 -52.49 -0.42 1.21 16 8 C 0.01 0.31 4.94 -17.43 -0.09 0.22 16 9 N -0.88 -23.62 11.34 55.49 0.63 -22.99 16 10 Si 0.89 20.82 29.61 -169.99 -5.03 15.79 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.17 3.69 5.41 -5.19 -0.03 3.66 16 15 C -0.04 -0.83 5.47 -104.56 -0.57 -1.40 16 16 C -0.11 -1.97 9.67 -39.60 -0.38 -2.36 16 17 C -0.07 -1.21 10.10 -39.28 -0.40 -1.60 16 18 C -0.01 -0.12 7.24 -84.71 -0.61 -0.74 16 19 N -0.49 -8.23 11.34 -12.54 -0.14 -8.37 16 20 C 0.20 2.83 13.13 51.95 0.68 3.52 16 21 O -0.22 -3.88 10.77 3.60 0.04 -3.84 16 22 C 0.01 0.29 7.43 -38.64 -0.29 0.00 16 23 C -0.08 -1.68 9.70 -39.54 -0.38 -2.06 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 32 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.40 16 34 H 0.04 0.84 8.01 -51.93 -0.42 0.43 16 35 H 0.11 2.72 5.27 -51.93 -0.27 2.45 16 36 H 0.13 1.90 8.05 -52.49 -0.42 1.48 16 37 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.25 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.13 2.90 8.06 -52.49 -0.42 2.47 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -29.04 331.26 -7.84 -36.88 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.73 Total: 1.84 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.17 Total: -10.68 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.06 Total: -44.98 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.04 -7.84 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232944842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.570 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds