Wall clock time and date at job start Mon Mar 30 2020 01:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46838 * 2 1 4 4 C 1.53002 * 109.47171 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47428 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00044 * 269.49961 * 5 4 3 7 7 H 1.07998 * 119.99701 * 325.90181 * 6 5 4 8 8 C 1.38807 * 120.00344 * 145.90360 * 6 5 4 9 9 N 1.31620 * 119.99777 * 336.77524 * 8 6 5 10 10 Si 1.86796 * 120.00482 * 156.77456 * 8 6 5 11 11 H 1.48505 * 109.47000 * 59.99477 * 10 8 6 12 12 H 1.48494 * 109.47603 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47200 * 300.00174 * 10 8 6 14 14 C 1.46497 * 120.00241 * 89.49580 * 5 4 3 15 15 C 1.50701 * 109.46898 * 90.00060 * 14 5 4 16 16 C 1.38727 * 119.76126 * 269.97692 * 15 14 5 17 17 C 1.37687 * 120.42084 * 180.02562 * 16 15 14 18 18 C 1.39586 * 119.72820 * 0.04347 * 17 16 15 19 19 N 1.36058 * 133.80578 * 179.97438 * 18 17 16 20 20 C 1.29903 * 108.80552 * 179.97438 * 19 18 17 21 21 O 1.34241 * 110.28442 * 0.26763 * 20 19 18 22 22 C 1.35113 * 108.15961 * 359.56580 * 21 20 19 23 23 C 1.37903 * 119.76349 * 90.00537 * 15 14 5 24 24 H 1.09006 * 109.47320 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46940 * 299.99207 * 1 2 3 26 26 H 1.08998 * 109.47777 * 59.99564 * 1 2 3 27 27 H 1.09003 * 109.46940 * 240.00793 * 2 1 3 28 28 H 1.08992 * 109.47376 * 120.00544 * 2 1 3 29 29 H 1.09003 * 109.47204 * 60.00467 * 3 2 1 30 30 H 1.08999 * 109.47948 * 300.00365 * 3 2 1 31 31 H 1.09003 * 109.46813 * 60.00059 * 4 3 2 32 32 H 1.09006 * 109.47245 * 300.00764 * 4 3 2 33 33 H 0.97000 * 120.00460 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47332 * 330.00356 * 14 5 4 35 35 H 1.08998 * 109.47778 * 209.99945 * 14 5 4 36 36 H 1.07998 * 119.78857 * 0.02650 * 16 15 14 37 37 H 1.08001 * 120.13343 * 179.97438 * 17 16 15 38 38 H 1.07994 * 124.86258 * 180.02562 * 20 19 18 39 39 H 1.08002 * 120.06435 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2957 3.4666 -1.1856 7 1 4.6632 2.9119 -2.0364 8 6 4.0643 4.8309 -1.2940 9 7 3.2212 5.4225 -0.4744 10 14 4.9492 5.8274 -2.6028 11 1 4.6041 5.2971 -3.9464 12 1 4.5307 7.2491 -2.5099 13 1 6.4161 5.7280 -2.3933 14 6 4.2924 3.5174 1.2689 15 6 5.7123 3.2816 1.7156 16 6 6.0086 2.1922 2.5219 17 6 7.3010 1.9642 2.9383 18 6 8.3184 2.8360 2.5468 19 7 9.6575 2.8870 2.7823 20 6 10.1508 3.9224 2.1723 21 8 9.1803 4.5885 1.5269 22 6 8.0146 3.9366 1.7312 23 6 6.7075 4.1506 1.3205 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 3.0591 6.3758 -0.5503 34 1 3.6057 3.1350 2.0242 35 1 4.1265 4.5863 1.1348 36 1 5.2206 1.5188 2.8248 37 1 7.5265 1.1149 3.5663 38 1 11.1920 4.2087 2.1858 39 1 6.4693 4.9966 0.6928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232944842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:44 Heat of formation + Delta-G solvation = 26.726261 kcal Electronic energy + Delta-G solvation = -20978.408987 eV Core-core repulsion = 17886.979724 eV Total energy + Delta-G solvation = -3091.429263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.12981 -39.51791 -37.65132 -35.80236 -35.31810 -33.23870 -31.72567 -31.34288 -29.27729 -27.42849 -25.50477 -24.62087 -23.29812 -22.75067 -22.23614 -21.49658 -19.06026 -18.59708 -18.09150 -17.60296 -16.90492 -16.42238 -16.20732 -15.73824 -15.34638 -15.08162 -14.88998 -14.78982 -14.27852 -13.80255 -13.45782 -13.30306 -13.20959 -13.04014 -12.76754 -12.55314 -12.50488 -12.31465 -12.21031 -11.94069 -11.83395 -11.76199 -11.53518 -11.44673 -11.21441 -10.54989 -9.73007 -9.29170 -8.62417 -7.86664 -5.40234 -0.16521 0.30782 1.40156 1.44782 1.49570 1.53741 1.72057 2.47245 2.71201 3.13177 3.22388 3.60127 3.78293 4.08571 4.17117 4.21881 4.32914 4.35171 4.39382 4.47524 4.52300 4.62338 4.83350 4.91680 5.04397 5.05165 5.10513 5.11569 5.13789 5.22843 5.32757 5.40814 5.43975 5.54673 5.57822 5.64817 5.75202 5.76558 5.88321 6.44904 6.62136 7.13765 7.84373 8.34106 9.09998 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.006477 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.187898 B = 4321.758264 C = 5939.403535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.121 4.121 4 C 0.145 3.855 5 N -0.587 5.587 6 C -0.259 4.259 7 H 0.051 0.949 8 C -0.025 4.025 9 N -0.905 5.905 10 Si 0.936 3.064 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.177 3.823 15 C -0.053 4.053 16 C -0.107 4.107 17 C -0.066 4.066 18 C -0.011 4.011 19 N -0.511 5.511 20 C 0.233 3.767 21 O -0.235 6.235 22 C -0.011 4.011 23 C -0.099 4.099 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.028 0.972 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.253 0.747 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.308 0.692 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 -7.007 6.481 11.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.161 4.161 4 C 0.020 3.980 5 N -0.306 5.306 6 C -0.389 4.389 7 H 0.069 0.931 8 C -0.223 4.223 9 N -0.549 5.549 10 Si 0.765 3.235 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.051 3.949 15 C -0.057 4.057 16 C -0.127 4.127 17 C -0.085 4.085 18 C -0.121 4.121 19 N -0.240 5.240 20 C 0.003 3.997 21 O -0.127 6.127 22 C -0.061 4.061 23 C -0.119 4.119 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.323 0.677 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.005 -7.283 6.819 11.645 hybrid contribution 0.104 1.652 -1.445 2.197 sum 6.109 -5.631 5.374 9.895 Atomic orbital electron populations 1.21745 0.95645 1.01863 1.01257 1.21462 0.96096 0.95720 1.02080 1.21977 0.97952 0.96318 0.99898 1.21090 0.92262 0.85324 0.99327 1.43947 1.74096 1.11310 1.01235 1.19134 1.36758 0.91770 0.91262 0.93134 1.25484 0.97911 0.99197 0.99730 1.70054 1.33473 1.10300 1.41062 0.85832 0.78981 0.78184 0.80532 1.20193 1.21578 1.21312 1.19906 0.87517 1.01003 0.86508 1.21016 0.98050 0.93147 0.93456 1.21206 0.96527 0.97220 0.97721 1.20523 0.89833 0.98340 0.99787 1.20065 0.91763 0.98144 1.02166 1.70532 1.07029 1.21645 1.24810 1.29431 0.96784 0.86024 0.87484 1.84510 1.16081 1.49580 1.62563 1.20496 0.87540 0.95343 1.02710 1.19718 0.87668 1.02171 1.02377 0.91291 0.93078 0.93916 0.92233 0.90974 0.94039 0.95319 0.94420 0.92205 0.93799 0.92775 0.90402 0.82591 0.82534 0.67734 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.16 5.93 30.59 0.18 -2.98 16 3 C -0.12 -4.45 5.54 30.59 0.17 -4.28 16 4 C 0.14 5.64 5.67 86.38 0.49 6.13 16 5 N -0.59 -27.54 2.43 -706.35 -1.72 -29.26 16 6 C -0.26 -13.76 9.48 84.03 0.80 -12.96 16 7 H 0.05 2.75 7.93 -2.91 -0.02 2.73 16 8 C -0.03 -1.36 4.94 84.86 0.42 -0.94 16 9 N -0.91 -50.66 11.34 21.65 0.25 -50.42 16 10 Si 0.94 44.29 29.61 68.60 2.03 46.33 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 13 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 14 C 0.18 7.84 5.41 85.63 0.46 8.30 16 15 C -0.05 -2.13 5.47 -19.83 -0.11 -2.24 16 16 C -0.11 -3.47 9.67 22.26 0.22 -3.25 16 17 C -0.07 -2.05 10.10 22.46 0.23 -1.83 16 18 C -0.01 -0.39 7.24 39.32 0.28 -0.10 16 19 N -0.51 -15.84 11.34 -308.42 -3.50 -19.34 16 20 C 0.23 5.72 13.13 130.53 1.71 7.44 16 21 O -0.24 -7.90 10.77 -10.04 -0.11 -8.01 16 22 C -0.01 -0.44 7.43 22.88 0.17 -0.27 16 23 C -0.10 -4.22 9.70 22.29 0.22 -4.01 16 24 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 32 H 0.06 2.01 8.07 -2.38 -0.02 1.99 16 33 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 34 H 0.05 2.20 8.01 -2.39 -0.02 2.18 16 35 H 0.08 4.03 5.27 -2.39 -0.01 4.02 16 36 H 0.16 4.10 8.05 -2.91 -0.02 4.08 16 37 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.31 2.95 8.06 -2.91 -0.02 2.92 16 39 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -65.67 331.26 3.93 -61.74 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.03 Total: 12.86 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.95 Total: -13.90 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -4.97 Total: -99.02 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.11 Total: -8.01 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.67 3.93 -61.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232944842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.465 kcal (2) G-P(sol) polarization free energy of solvation -65.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds