Wall clock time and date at job start Mon Mar 30 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.30045 * 2 1 4 4 C 1.50252 * 109.38788 * 240.26134 * 2 1 3 5 5 O 1.21290 * 118.62484 * 42.64142 * 4 2 1 6 6 N 1.33714 * 122.75520 * 222.66545 * 4 2 1 7 7 C 1.46006 * 122.92309 * 1.66368 * 6 4 2 8 8 C 1.52991 * 110.04203 * 341.83934 * 7 6 4 9 9 N 1.46903 * 109.38765 * 119.73994 * 2 1 3 10 10 C 1.46889 * 111.00088 * 293.82277 * 9 2 1 11 11 C 1.50698 * 109.47073 * 164.40402 * 10 9 2 12 12 C 1.37643 * 120.13143 * 105.65977 * 11 10 9 13 13 C 1.38608 * 120.24967 * 179.97438 * 12 11 10 14 14 C 1.38651 * 120.50598 * 359.97438 * 13 12 11 15 15 C 1.37601 * 120.24659 * 359.76391 * 14 13 12 16 16 C 1.40697 * 120.12755 * 285.63653 * 11 10 9 17 17 C 1.41389 * 120.24487 * 0.02562 * 16 11 10 18 18 H 1.08004 * 120.00174 * 333.73416 * 17 16 11 19 19 C 1.39948 * 120.00403 * 153.73718 * 17 16 11 20 20 N 1.30827 * 119.99640 * 329.47636 * 19 17 16 21 21 Si 1.86798 * 120.00443 * 149.48103 * 19 17 16 22 22 H 1.48498 * 109.47144 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.46660 * 300.00025 * 21 19 17 24 24 H 1.48494 * 109.47285 * 59.99816 * 21 19 17 25 25 H 1.08999 * 109.46893 * 300.26015 * 1 2 3 26 26 H 1.09000 * 109.46926 * 60.25405 * 1 2 3 27 27 H 1.08996 * 109.46714 * 180.25878 * 1 2 3 28 28 H 0.96996 * 118.54007 * 181.68119 * 6 4 2 29 29 H 1.09000 * 109.37792 * 102.01708 * 7 6 4 30 30 H 1.09000 * 109.37666 * 221.77827 * 7 6 4 31 31 H 1.08997 * 109.61549 * 290.52977 * 8 7 6 32 32 H 1.09005 * 109.59037 * 170.06765 * 8 7 6 33 33 H 1.09004 * 109.47731 * 44.40264 * 10 9 2 34 34 H 1.09004 * 109.47186 * 284.39921 * 10 9 2 35 35 H 1.08003 * 119.86824 * 359.97425 * 12 11 10 36 36 H 1.08004 * 119.74753 * 180.02562 * 13 12 11 37 37 H 1.07995 * 119.87941 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.12869 * 180.25654 * 15 14 13 39 39 H 0.96999 * 120.00082 * 353.58842 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0288 0.0000 4 6 2.0288 -0.7031 -1.2306 5 8 1.4829 -0.4777 -2.2901 6 7 3.0490 -1.5671 -1.2068 7 6 3.7494 -1.9344 0.0205 8 6 3.4714 -0.8996 1.1125 9 7 2.0177 -0.6874 1.2032 10 6 1.6700 0.0643 2.4163 11 6 1.8324 -0.8249 3.6221 12 6 2.9042 -0.6527 4.4683 13 6 3.0557 -1.4688 5.5783 14 6 2.1317 -2.4661 5.8500 15 6 1.0495 -2.6530 5.0209 16 6 0.8887 -1.8342 3.8876 17 6 -0.2163 -2.0205 3.0254 18 1 -0.5909 -1.1931 2.4410 19 6 -0.8249 -3.2771 2.9293 20 7 -0.1157 -4.3624 3.1047 21 14 -2.6496 -3.4048 2.5505 22 1 -3.0465 -4.8349 2.5037 23 1 -3.4248 -2.7108 3.6102 24 1 -2.9281 -2.7700 1.2373 25 1 -0.3633 0.5179 0.8876 26 1 -0.3633 0.5099 -0.8923 27 1 -0.3632 -1.0276 0.0046 28 1 3.3366 -1.9676 -2.0421 29 1 3.4055 -2.9134 0.3541 30 1 4.8213 -1.9743 -0.1730 31 1 3.9628 0.0400 0.8600 32 1 3.8475 -1.2661 2.0677 33 1 0.6356 0.4020 2.3507 34 1 2.3288 0.9276 2.5102 35 1 3.6299 0.1214 4.2665 36 1 3.8996 -1.3262 6.2371 37 1 2.2594 -3.0960 6.7180 38 1 0.3287 -3.4277 5.2367 39 1 0.8467 -4.3013 3.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:32 Heat of formation + Delta-G solvation = -16.056471 kcal Electronic energy + Delta-G solvation = -21986.316856 eV Core-core repulsion = 18893.032394 eV Total energy + Delta-G solvation = -3093.284462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20722 -38.09900 -36.63028 -34.74774 -33.81321 -31.41408 -30.23227 -29.25203 -27.78085 -25.72128 -24.88379 -22.55372 -22.44565 -20.97652 -19.69239 -18.75174 -17.70619 -17.12678 -16.60623 -15.30655 -14.96913 -14.81433 -14.42400 -14.24043 -14.09489 -13.89979 -13.51206 -13.04106 -12.46514 -12.27288 -12.10593 -11.93628 -11.70718 -11.53215 -11.34116 -11.08891 -10.97464 -10.94618 -10.71148 -10.39659 -10.36637 -9.74785 -9.52241 -9.35151 -8.90153 -8.82651 -7.90689 -7.55930 -7.53474 -7.14745 -4.31977 2.72672 2.83237 2.85806 3.19785 3.30945 3.37973 3.46989 4.05693 4.22094 4.60744 4.76242 5.03043 5.26220 5.36662 5.41194 5.51259 5.56936 5.81279 5.90248 6.05546 6.09803 6.11724 6.16546 6.19803 6.34694 6.42426 6.61545 6.72474 6.88816 6.96986 7.20030 7.36406 7.41089 7.46054 7.49140 7.72375 7.85680 7.90642 7.96797 8.26353 8.36548 8.41296 8.83535 8.95415 10.08345 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.008817 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.490031 B = 3174.881993 C = 4431.026774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.068 3.932 3 H 0.063 0.937 4 C 0.533 3.467 5 O -0.561 6.561 6 N -0.718 5.718 7 C 0.117 3.883 8 C 0.037 3.963 9 N -0.503 5.503 10 C 0.126 3.874 11 C -0.203 4.203 12 C -0.073 4.073 13 C -0.265 4.265 14 C -0.082 4.082 15 C -0.221 4.221 16 C 0.119 3.881 17 C -0.495 4.495 18 H 0.079 0.921 19 C 0.046 3.954 20 N -0.787 5.787 21 Si 1.051 2.949 22 H -0.276 1.276 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.395 0.605 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.018 0.982 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 4.568 -3.597 7.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.044 4.044 3 H 0.081 0.919 4 C 0.319 3.681 5 O -0.439 6.439 6 N -0.369 5.369 7 C -0.008 4.008 8 C -0.091 4.091 9 N -0.228 5.228 10 C 0.000 4.000 11 C -0.204 4.204 12 C -0.092 4.092 13 C -0.285 4.285 14 C -0.101 4.101 15 C -0.241 4.241 16 C 0.115 3.885 17 C -0.522 4.522 18 H 0.097 0.903 19 C -0.177 4.177 20 N -0.409 5.409 21 Si 0.875 3.125 22 H -0.201 1.201 23 H -0.201 1.201 24 H -0.200 1.200 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.230 0.770 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.058 3.191 -4.091 6.022 hybrid contribution 2.067 1.531 0.036 2.572 sum 5.124 4.722 -4.054 8.062 Atomic orbital electron populations 1.21705 0.91271 1.04012 1.01781 1.21666 0.98463 0.95735 0.88497 0.91937 1.20190 0.78716 0.78678 0.90473 1.90701 1.56839 1.64683 1.31672 1.45533 1.34671 1.45564 1.11131 1.21517 0.95683 0.99688 0.83906 1.22435 0.89678 0.97114 0.99892 1.62548 1.11322 1.48266 1.00694 1.20689 0.99946 0.92144 0.87213 1.19251 0.98243 1.05126 0.97815 1.20400 0.96206 0.97478 0.95133 1.20190 1.02881 1.03254 1.02154 1.20584 0.95100 0.96723 0.97675 1.21107 1.00104 1.05399 0.97461 1.17346 0.90335 0.90031 0.90747 1.20441 1.11368 0.98344 1.22079 0.90254 1.26838 1.06758 0.91897 0.92246 1.70433 1.11183 1.31421 1.27902 0.83847 0.73722 0.77183 0.77781 1.20076 1.20076 1.19991 0.91380 0.91798 0.90860 0.77000 0.90525 0.90848 0.95012 0.88057 0.90439 0.96342 0.89914 0.89775 0.89702 0.88251 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.40 37.16 0.31 -1.89 16 2 C 0.07 1.13 2.49 -69.08 -0.17 0.96 16 3 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 4 C 0.53 9.23 7.38 -11.68 -0.09 9.14 16 5 O -0.56 -11.16 17.06 5.55 0.09 -11.06 16 6 N -0.72 -10.39 5.52 -61.06 -0.34 -10.72 16 7 C 0.12 1.55 7.39 -4.31 -0.03 1.52 16 8 C 0.04 0.57 5.44 -3.67 -0.02 0.55 16 9 N -0.50 -8.89 4.29 -229.50 -0.98 -9.87 16 10 C 0.13 2.34 4.28 -4.98 -0.02 2.32 16 11 C -0.20 -4.36 4.76 -103.91 -0.50 -4.86 16 12 C -0.07 -1.50 8.90 -39.66 -0.35 -1.86 16 13 C -0.27 -5.61 10.05 -39.29 -0.39 -6.00 16 14 C -0.08 -1.84 10.02 -39.66 -0.40 -2.23 16 15 C -0.22 -5.40 8.18 -38.87 -0.32 -5.72 16 16 C 0.12 2.87 5.23 -106.82 -0.56 2.31 16 17 C -0.50 -12.01 8.23 -37.74 -0.31 -12.32 16 18 H 0.08 1.88 6.00 -52.48 -0.31 1.57 16 19 C 0.05 1.11 4.79 -17.34 -0.08 1.03 16 20 N -0.79 -20.12 12.43 55.55 0.69 -19.43 16 21 Si 1.05 21.25 30.03 -169.99 -5.10 16.15 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H 0.07 1.10 6.05 -51.93 -0.31 0.78 16 26 H 0.06 1.02 7.81 -51.93 -0.41 0.61 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.40 4.95 8.84 -40.82 -0.36 4.59 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.10 1.64 6.68 -51.93 -0.35 1.29 16 33 H 0.08 1.48 4.85 -51.93 -0.25 1.22 16 34 H 0.02 0.31 7.84 -51.93 -0.41 -0.09 16 35 H 0.08 1.50 7.99 -52.48 -0.42 1.08 16 36 H 0.08 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 2.53 6.79 -52.49 -0.36 2.18 16 39 H 0.30 7.86 7.21 -40.82 -0.29 7.56 16 LS Contribution 312.97 15.07 4.72 4.72 Total: -1.00 -27.52 312.97 -9.08 -36.59 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.22 Total: 10.67 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.93 Total: -17.05 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -0.63 Total: -40.02 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.10 Total: 16.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.52 -9.08 -36.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.538 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds