Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.30045 * 2 1 4 4 C 1.50252 * 109.38788 * 240.26134 * 2 1 3 5 5 O 1.21290 * 118.62484 * 42.64142 * 4 2 1 6 6 N 1.33714 * 122.75520 * 222.66545 * 4 2 1 7 7 C 1.46006 * 122.92309 * 1.66368 * 6 4 2 8 8 C 1.52991 * 110.04203 * 341.83934 * 7 6 4 9 9 N 1.46903 * 109.38765 * 119.73994 * 2 1 3 10 10 C 1.46889 * 111.00088 * 293.82277 * 9 2 1 11 11 C 1.50698 * 109.47073 * 164.40402 * 10 9 2 12 12 C 1.37643 * 120.13143 * 105.65977 * 11 10 9 13 13 C 1.38608 * 120.24967 * 179.97438 * 12 11 10 14 14 C 1.38651 * 120.50598 * 359.97438 * 13 12 11 15 15 C 1.37601 * 120.24659 * 359.76391 * 14 13 12 16 16 C 1.40697 * 120.12755 * 285.63653 * 11 10 9 17 17 C 1.41389 * 120.24487 * 0.02562 * 16 11 10 18 18 H 1.08004 * 120.00174 * 333.73416 * 17 16 11 19 19 C 1.39948 * 120.00403 * 153.73718 * 17 16 11 20 20 N 1.30827 * 119.99640 * 329.47636 * 19 17 16 21 21 Si 1.86798 * 120.00443 * 149.48103 * 19 17 16 22 22 H 1.48498 * 109.47144 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.46660 * 300.00025 * 21 19 17 24 24 H 1.48494 * 109.47285 * 59.99816 * 21 19 17 25 25 H 1.08999 * 109.46893 * 300.26015 * 1 2 3 26 26 H 1.09000 * 109.46926 * 60.25405 * 1 2 3 27 27 H 1.08996 * 109.46714 * 180.25878 * 1 2 3 28 28 H 0.96996 * 118.54007 * 181.68119 * 6 4 2 29 29 H 1.09000 * 109.37792 * 102.01708 * 7 6 4 30 30 H 1.09000 * 109.37666 * 221.77827 * 7 6 4 31 31 H 1.08997 * 109.61549 * 290.52977 * 8 7 6 32 32 H 1.09005 * 109.59037 * 170.06765 * 8 7 6 33 33 H 1.09004 * 109.47731 * 44.40264 * 10 9 2 34 34 H 1.09004 * 109.47186 * 284.39921 * 10 9 2 35 35 H 1.08003 * 119.86824 * 359.97425 * 12 11 10 36 36 H 1.08004 * 119.74753 * 180.02562 * 13 12 11 37 37 H 1.07995 * 119.87941 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.12869 * 180.25654 * 15 14 13 39 39 H 0.96999 * 120.00082 * 353.58842 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0288 0.0000 4 6 2.0288 -0.7031 -1.2306 5 8 1.4829 -0.4777 -2.2901 6 7 3.0490 -1.5671 -1.2068 7 6 3.7494 -1.9344 0.0205 8 6 3.4714 -0.8996 1.1125 9 7 2.0177 -0.6874 1.2032 10 6 1.6700 0.0643 2.4163 11 6 1.8324 -0.8249 3.6221 12 6 2.9042 -0.6527 4.4683 13 6 3.0557 -1.4688 5.5783 14 6 2.1317 -2.4661 5.8500 15 6 1.0495 -2.6530 5.0209 16 6 0.8887 -1.8342 3.8876 17 6 -0.2163 -2.0205 3.0254 18 1 -0.5909 -1.1931 2.4410 19 6 -0.8249 -3.2771 2.9293 20 7 -0.1157 -4.3624 3.1047 21 14 -2.6496 -3.4048 2.5505 22 1 -3.0465 -4.8349 2.5037 23 1 -3.4248 -2.7108 3.6102 24 1 -2.9281 -2.7700 1.2373 25 1 -0.3633 0.5179 0.8876 26 1 -0.3633 0.5099 -0.8923 27 1 -0.3632 -1.0276 0.0046 28 1 3.3366 -1.9676 -2.0421 29 1 3.4055 -2.9134 0.3541 30 1 4.8213 -1.9743 -0.1730 31 1 3.9628 0.0400 0.8600 32 1 3.8475 -1.2661 2.0677 33 1 0.6356 0.4020 2.3507 34 1 2.3288 0.9276 2.5102 35 1 3.6299 0.1214 4.2665 36 1 3.8996 -1.3262 6.2371 37 1 2.2594 -3.0960 6.7180 38 1 0.3287 -3.4277 5.2367 39 1 0.8467 -4.3013 3.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = -33.455455 kcal Electronic energy + Delta-G solvation = -21987.071333 eV Core-core repulsion = 18893.032394 eV Total energy + Delta-G solvation = -3094.038938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52728 -39.73936 -38.07749 -36.02426 -35.59963 -32.91775 -31.67317 -30.99283 -29.13378 -27.21305 -26.60118 -23.93292 -23.76480 -22.73290 -21.34706 -20.00995 -19.47724 -18.41387 -17.92192 -16.76576 -16.48061 -16.24669 -15.96718 -15.76390 -15.57216 -15.46009 -14.92403 -14.37978 -14.03946 -13.81735 -13.70913 -13.49967 -13.25174 -12.92056 -12.79418 -12.58870 -12.48640 -12.30916 -12.22797 -12.01378 -11.96215 -11.41623 -11.11658 -10.89373 -10.62336 -10.11608 -9.36688 -9.32622 -9.14642 -8.98921 -6.16921 1.00968 1.08437 1.50590 1.53017 1.67647 1.77208 2.27916 2.37883 2.76941 2.93555 3.50611 3.76808 3.88340 3.99644 4.11594 4.24479 4.31758 4.38920 4.49722 4.56403 4.65565 4.69407 4.82934 4.86610 4.92690 4.99642 5.06421 5.17293 5.28637 5.45067 5.65588 5.73000 5.88835 5.98445 6.01535 6.13242 6.19415 6.19569 6.27047 6.48242 6.60007 7.02684 7.14491 7.16663 8.19347 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.008817 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.490031 B = 3174.881993 C = 4431.026774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.070 3.930 3 H 0.083 0.917 4 C 0.527 3.473 5 O -0.593 6.593 6 N -0.707 5.707 7 C 0.119 3.881 8 C 0.036 3.964 9 N -0.523 5.523 10 C 0.131 3.869 11 C -0.197 4.197 12 C -0.076 4.076 13 C -0.258 4.258 14 C -0.093 4.093 15 C -0.248 4.248 16 C 0.096 3.904 17 C -0.514 4.514 18 H 0.078 0.922 19 C 0.013 3.987 20 N -0.815 5.815 21 Si 1.092 2.908 22 H -0.280 1.280 23 H -0.265 1.265 24 H -0.262 1.262 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.406 0.594 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 6.189 -3.746 9.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 H 0.101 0.899 4 C 0.314 3.686 5 O -0.474 6.474 6 N -0.358 5.358 7 C -0.005 4.005 8 C -0.092 4.092 9 N -0.250 5.250 10 C 0.005 3.995 11 C -0.199 4.199 12 C -0.094 4.094 13 C -0.278 4.278 14 C -0.111 4.111 15 C -0.268 4.268 16 C 0.093 3.907 17 C -0.541 4.541 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.438 5.438 21 Si 0.912 3.088 22 H -0.205 1.205 23 H -0.190 1.190 24 H -0.187 1.187 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.242 0.758 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.754 4.807 -4.227 7.973 hybrid contribution 1.724 1.092 0.173 2.048 sum 6.478 5.898 -4.054 9.653 Atomic orbital electron populations 1.21626 0.91963 1.02202 1.02376 1.21636 0.97948 0.96637 0.87853 0.89927 1.20323 0.79025 0.79107 0.90139 1.90686 1.58017 1.66046 1.32641 1.45490 1.33735 1.44420 1.12137 1.21613 0.97854 0.98093 0.82912 1.22501 0.88160 0.98531 1.00035 1.62416 1.13274 1.48700 1.00569 1.20585 1.00146 0.92199 0.86564 1.19628 0.97468 1.04021 0.98778 1.20761 0.96359 0.97931 0.94373 1.20600 1.02794 1.02002 1.02357 1.20833 0.94819 0.97519 0.97935 1.21070 1.01000 1.05853 0.98834 1.17651 0.91214 0.91078 0.90768 1.20482 1.12419 0.98349 1.22894 0.90353 1.27885 1.09467 0.91778 0.91375 1.70541 1.10169 1.31993 1.31127 0.83320 0.70107 0.76992 0.78405 1.20498 1.18979 1.18697 0.90848 0.91066 0.93789 0.75791 0.92391 0.86530 0.92717 0.89022 0.91336 0.93952 0.86504 0.86978 0.88143 0.90718 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 8.40 71.98 0.60 -3.54 16 2 C 0.07 2.24 2.49 44.03 0.11 2.35 16 3 H 0.08 2.31 8.12 -2.38 -0.02 2.29 16 4 C 0.53 17.50 7.38 87.68 0.65 18.14 16 5 O -0.59 -23.09 17.06 -3.06 -0.05 -23.14 16 6 N -0.71 -19.03 5.52 -466.08 -2.57 -21.60 16 7 C 0.12 2.87 7.39 86.47 0.64 3.51 16 8 C 0.04 0.98 5.44 86.24 0.47 1.45 16 9 N -0.52 -17.63 4.29 -879.99 -3.77 -21.40 16 10 C 0.13 4.61 4.28 85.56 0.37 4.97 16 11 C -0.20 -8.20 4.76 -19.40 -0.09 -8.29 16 12 C -0.08 -2.87 8.90 22.22 0.20 -2.67 16 13 C -0.26 -10.20 10.05 22.46 0.23 -9.98 16 14 C -0.09 -4.07 10.02 22.22 0.22 -3.85 16 15 C -0.25 -12.36 8.18 22.73 0.19 -12.18 16 16 C 0.10 4.68 5.23 -21.29 -0.11 4.57 16 17 C -0.51 -25.48 8.23 23.46 0.19 -25.29 16 18 H 0.08 3.79 6.00 -2.91 -0.02 3.78 16 19 C 0.01 0.63 4.79 85.26 0.41 1.03 16 20 N -0.82 -43.45 12.43 21.83 0.27 -43.17 16 21 Si 1.09 43.88 30.03 68.60 2.06 45.94 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H 0.07 2.33 6.05 -2.39 -0.01 2.32 16 26 H 0.07 2.23 7.81 -2.39 -0.02 2.21 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.41 9.35 8.84 -92.71 -0.82 8.53 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 32 H 0.09 2.71 6.68 -2.38 -0.02 2.69 16 33 H 0.07 2.53 4.85 -2.38 -0.01 2.51 16 34 H 0.04 1.28 7.84 -2.39 -0.02 1.26 16 35 H 0.12 3.65 7.99 -2.91 -0.02 3.63 16 36 H 0.11 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.10 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.07 4.01 6.79 -2.91 -0.02 3.99 16 39 H 0.28 15.63 7.21 -92.71 -0.67 14.96 16 Total: -1.00 -60.40 312.97 0.35 -60.06 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.35 Total: 33.09 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 4.06 Total: -29.77 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -6.07 Total: -86.18 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.06 Total: 45.94 kcal Total: -60.40 0.35 -60.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.600 kcal (2) G-P(sol) polarization free energy of solvation -60.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds