Wall clock time and date at job start Mon Mar 30 2020 01:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47311 * 2 1 4 4 H 1.09005 * 109.47325 * 305.88255 * 3 2 1 5 5 C 1.50700 * 109.47412 * 185.87932 * 3 2 1 6 6 H 1.07994 * 119.99954 * 242.70753 * 5 3 2 7 7 C 1.37874 * 119.99853 * 62.70830 * 5 3 2 8 8 N 1.31510 * 119.99894 * 193.93675 * 7 5 3 9 9 Si 1.86796 * 120.00094 * 13.93408 * 7 5 3 10 10 H 1.48507 * 109.47131 * 94.84387 * 9 7 5 11 11 H 1.48501 * 109.47204 * 214.84152 * 9 7 5 12 12 H 1.48506 * 109.47508 * 334.84472 * 9 7 5 13 13 N 1.46902 * 109.46889 * 65.87741 * 3 2 1 14 14 C 1.46890 * 111.00213 * 205.37626 * 13 3 2 15 15 H 1.09001 * 110.46403 * 325.07546 * 14 13 3 16 16 C 1.51397 * 110.50941 * 87.82761 * 14 13 3 17 17 O 1.21281 * 126.44270 * 298.61971 * 16 14 13 18 18 N 1.34373 * 107.11221 * 118.64789 * 16 14 13 19 19 C 1.39527 * 112.25054 * 359.97438 * 18 16 14 20 20 C 1.39366 * 130.82694 * 179.97438 * 19 18 16 21 21 C 1.37942 * 120.13341 * 180.02562 * 20 19 18 22 22 C 1.38298 * 120.37069 * 0.25684 * 21 20 19 23 23 C 1.38401 * 119.83115 * 359.44623 * 22 21 20 24 24 C 1.50695 * 120.04440 * 180.25677 * 23 22 21 25 25 C 1.37679 * 119.90918 * 0.58769 * 23 22 21 26 26 H 1.08995 * 109.46778 * 183.43813 * 1 2 3 27 27 H 1.08993 * 109.47018 * 303.44243 * 1 2 3 28 28 H 1.09008 * 109.46958 * 63.44180 * 1 2 3 29 29 H 1.09002 * 109.47293 * 240.00480 * 2 1 3 30 30 H 1.08997 * 109.47429 * 120.00297 * 2 1 3 31 31 H 0.97003 * 119.99913 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00103 * 329.33834 * 13 3 2 33 33 H 0.97009 * 123.87333 * 179.97438 * 18 16 14 34 34 H 1.08000 * 119.93196 * 359.97438 * 20 19 18 35 35 H 1.07993 * 119.81085 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.08800 * 179.74708 * 22 21 20 37 37 H 1.09004 * 109.47073 * 270.32960 * 24 23 22 38 38 H 1.08993 * 109.47273 * 30.33570 * 24 23 22 39 39 H 1.09000 * 109.46795 * 150.33271 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5933 1.9859 -0.8327 5 6 3.5400 1.4450 -0.1455 6 1 4.1584 1.8461 0.6437 7 6 4.1228 0.9352 -1.2863 8 7 5.4131 0.6823 -1.3088 9 14 3.0795 0.6038 -2.8000 10 1 3.1450 1.7738 -3.7122 11 1 3.5933 -0.6001 -3.5014 12 1 1.6708 0.3742 -2.3898 13 7 1.6696 2.0928 1.2641 14 6 1.5797 3.5497 1.1000 15 1 2.3283 3.9001 0.3894 16 6 0.1900 3.9481 0.6504 17 8 -0.3587 3.6117 -0.3775 18 7 -0.3208 4.7451 1.6041 19 6 0.5673 4.9382 2.6628 20 6 0.4396 5.6807 3.8352 21 6 1.4743 5.7191 4.7467 22 6 2.6467 5.0271 4.5032 23 6 2.7786 4.2825 3.3441 24 6 4.0517 3.5219 3.0767 25 6 1.7476 4.2431 2.4324 26 1 -0.3633 -1.0258 0.0616 27 1 -0.3633 0.5663 0.8575 28 1 -0.3633 0.4595 -0.9193 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.8230 0.3232 -2.1114 32 1 0.8064 1.7156 1.6254 33 1 -1.2055 5.1407 1.5614 34 1 -0.4709 6.2278 4.0302 35 1 1.3699 6.2965 5.6533 36 1 3.4554 5.0637 5.2181 37 1 4.7494 4.1605 2.5348 38 1 4.4982 3.2167 4.0230 39 1 3.8283 2.6384 2.4787 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:27 Heat of formation + Delta-G solvation = 3.730518 kcal Electronic energy + Delta-G solvation = -21756.895693 eV Core-core repulsion = 18664.469260 eV Total energy + Delta-G solvation = -3092.426434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36208 -38.35718 -36.42123 -35.60831 -33.12878 -32.08113 -31.23506 -29.22714 -27.80506 -26.62958 -25.29376 -22.53051 -21.96727 -21.11448 -20.41445 -19.82791 -17.29881 -16.92637 -16.41464 -15.75810 -15.72365 -15.14857 -14.52344 -14.38458 -13.85357 -13.52113 -13.35805 -13.32027 -12.85360 -12.54497 -12.30628 -12.08671 -11.97273 -11.90744 -11.61405 -11.25831 -10.96376 -10.78289 -10.53199 -10.48270 -10.31683 -10.15725 -9.93157 -9.42431 -9.16687 -8.50630 -8.45511 -7.89140 -7.53235 -6.06725 -4.00529 1.31250 1.48592 2.65047 3.12963 3.31240 3.41210 3.47649 3.90362 4.35316 4.45400 4.74993 4.89605 5.08986 5.12842 5.27489 5.37421 5.53824 5.59005 5.84598 5.90029 5.97088 6.02989 6.07534 6.12273 6.19207 6.28182 6.52300 6.56786 6.64213 6.70995 6.72579 6.78974 6.90557 6.93682 7.03857 7.17574 7.23598 7.73246 7.78092 8.03120 8.15442 8.67212 9.07282 9.59428 11.05614 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.006742 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.556090 B = 4151.886404 C = 4916.442530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C 0.185 3.815 4 H 0.012 0.988 5 C -0.505 4.505 6 H 0.085 0.915 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.853 3.147 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.249 1.249 13 N -0.633 5.633 14 C 0.105 3.895 15 H 0.134 0.866 16 C 0.495 3.505 17 O -0.498 6.498 18 N -0.665 5.665 19 C 0.141 3.859 20 C -0.156 4.156 21 C -0.087 4.087 22 C -0.151 4.151 23 C -0.002 4.002 24 C -0.129 4.129 25 C -0.118 4.118 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.262 0.738 32 H 0.325 0.675 33 H 0.404 0.596 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 8.516 10.973 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C 0.077 3.923 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.103 0.897 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.680 3.320 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.264 5.264 14 C -0.008 4.008 15 H 0.152 0.848 16 C 0.280 3.720 17 O -0.370 6.370 18 N -0.309 5.309 19 C 0.044 3.956 20 C -0.178 4.178 21 C -0.105 4.105 22 C -0.170 4.170 23 C -0.003 4.003 24 C -0.186 4.186 25 C -0.122 4.122 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.241 0.759 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.076 8.145 10.403 15.485 hybrid contribution -1.896 0.209 -1.407 2.370 sum -9.972 8.354 8.996 15.816 Atomic orbital electron populations 1.21891 0.98474 1.00064 1.00716 1.22126 0.92579 0.99759 1.02168 1.19744 0.97047 0.89916 0.85550 0.97006 1.20968 0.88767 1.40579 1.04017 0.89683 1.24853 0.94666 0.94742 0.98386 1.69948 1.10806 1.43818 1.28423 0.87389 0.82561 0.77898 0.84114 1.20907 1.21423 1.17351 1.60797 1.36030 0.98171 1.31386 1.21008 0.93112 0.92081 0.94634 0.84844 1.22226 0.90366 0.77140 0.82248 1.90785 1.67619 1.55083 1.23518 1.43884 1.18076 1.48883 1.20067 1.18213 0.89994 0.97980 0.89409 1.20201 1.00725 1.03468 0.93360 1.20749 0.92852 0.98677 0.98247 1.21003 0.98295 0.99805 0.97914 1.19220 0.95071 0.94271 0.91714 1.21019 0.93144 1.01868 1.02526 1.19714 0.93924 1.01046 0.97509 0.93791 0.94013 0.93336 0.91785 0.91816 0.92775 0.85643 0.75883 0.86339 0.85783 0.85705 0.91237 0.92227 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.80 37.16 0.36 -2.49 16 2 C -0.13 -2.75 4.70 -26.73 -0.13 -2.88 16 3 C 0.19 4.25 1.43 -68.86 -0.10 4.15 16 4 H 0.01 0.31 6.06 -51.93 -0.31 -0.01 16 5 C -0.51 -13.44 9.02 -34.44 -0.31 -13.75 16 6 H 0.09 2.41 6.65 -52.49 -0.35 2.06 16 7 C 0.08 2.11 5.34 -17.82 -0.10 2.02 16 8 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 9 Si 0.85 21.22 25.70 -169.99 -4.37 16.85 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.25 -5.95 5.34 56.52 0.30 -5.65 16 13 N -0.63 -12.45 5.26 -102.80 -0.54 -12.99 16 14 C 0.10 1.92 2.73 -69.47 -0.19 1.73 16 15 H 0.13 2.70 7.73 -51.93 -0.40 2.30 16 16 C 0.49 8.79 7.99 -10.82 -0.09 8.71 16 17 O -0.50 -10.41 17.47 5.56 0.10 -10.31 16 18 N -0.66 -9.26 5.88 -9.70 -0.06 -9.32 16 19 C 0.14 1.95 7.11 -83.69 -0.60 1.35 16 20 C -0.16 -1.76 10.07 -39.27 -0.40 -2.16 16 21 C -0.09 -0.91 10.02 -39.67 -0.40 -1.31 16 22 C -0.15 -1.81 9.73 -39.50 -0.38 -2.19 16 23 C 0.00 -0.03 5.87 -104.77 -0.61 -0.64 16 24 C -0.13 -2.00 9.92 36.00 0.36 -1.64 16 25 C -0.12 -1.87 5.77 -104.37 -0.60 -2.47 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.72 6.38 -51.93 -0.33 0.39 16 28 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.06 1.46 4.60 -51.93 -0.24 1.22 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.32 6.04 6.23 -39.29 -0.24 5.80 16 33 H 0.40 4.50 8.96 -40.82 -0.37 4.13 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.11 2.02 5.61 -51.93 -0.29 1.73 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -30.36 312.67 -7.71 -38.07 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.15 Total: 10.21 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.17 Total: -11.56 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.18 Total: -47.97 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.10 Total: -10.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.37 Total: 16.85 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.36 -7.71 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.800 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds