Wall clock time and date at job start Mon Mar 30 2020 01:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47311 * 2 1 4 4 H 1.09005 * 109.47325 * 305.88255 * 3 2 1 5 5 C 1.50700 * 109.47412 * 185.87932 * 3 2 1 6 6 H 1.07994 * 119.99954 * 242.70753 * 5 3 2 7 7 C 1.37874 * 119.99853 * 62.70830 * 5 3 2 8 8 N 1.31510 * 119.99894 * 193.93675 * 7 5 3 9 9 Si 1.86796 * 120.00094 * 13.93408 * 7 5 3 10 10 H 1.48507 * 109.47131 * 94.84387 * 9 7 5 11 11 H 1.48501 * 109.47204 * 214.84152 * 9 7 5 12 12 H 1.48506 * 109.47508 * 334.84472 * 9 7 5 13 13 N 1.46902 * 109.46889 * 65.87741 * 3 2 1 14 14 C 1.46890 * 111.00213 * 205.37626 * 13 3 2 15 15 H 1.09001 * 110.46403 * 325.07546 * 14 13 3 16 16 C 1.51397 * 110.50941 * 87.82761 * 14 13 3 17 17 O 1.21281 * 126.44270 * 298.61971 * 16 14 13 18 18 N 1.34373 * 107.11221 * 118.64789 * 16 14 13 19 19 C 1.39527 * 112.25054 * 359.97438 * 18 16 14 20 20 C 1.39366 * 130.82694 * 179.97438 * 19 18 16 21 21 C 1.37942 * 120.13341 * 180.02562 * 20 19 18 22 22 C 1.38298 * 120.37069 * 0.25684 * 21 20 19 23 23 C 1.38401 * 119.83115 * 359.44623 * 22 21 20 24 24 C 1.50695 * 120.04440 * 180.25677 * 23 22 21 25 25 C 1.37679 * 119.90918 * 0.58769 * 23 22 21 26 26 H 1.08995 * 109.46778 * 183.43813 * 1 2 3 27 27 H 1.08993 * 109.47018 * 303.44243 * 1 2 3 28 28 H 1.09008 * 109.46958 * 63.44180 * 1 2 3 29 29 H 1.09002 * 109.47293 * 240.00480 * 2 1 3 30 30 H 1.08997 * 109.47429 * 120.00297 * 2 1 3 31 31 H 0.97003 * 119.99913 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00103 * 329.33834 * 13 3 2 33 33 H 0.97009 * 123.87333 * 179.97438 * 18 16 14 34 34 H 1.08000 * 119.93196 * 359.97438 * 20 19 18 35 35 H 1.07993 * 119.81085 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.08800 * 179.74708 * 22 21 20 37 37 H 1.09004 * 109.47073 * 270.32960 * 24 23 22 38 38 H 1.08993 * 109.47273 * 30.33570 * 24 23 22 39 39 H 1.09000 * 109.46795 * 150.33271 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5933 1.9859 -0.8327 5 6 3.5400 1.4450 -0.1455 6 1 4.1584 1.8461 0.6437 7 6 4.1228 0.9352 -1.2863 8 7 5.4131 0.6823 -1.3088 9 14 3.0795 0.6038 -2.8000 10 1 3.1450 1.7738 -3.7122 11 1 3.5933 -0.6001 -3.5014 12 1 1.6708 0.3742 -2.3898 13 7 1.6696 2.0928 1.2641 14 6 1.5797 3.5497 1.1000 15 1 2.3283 3.9001 0.3894 16 6 0.1900 3.9481 0.6504 17 8 -0.3587 3.6117 -0.3775 18 7 -0.3208 4.7451 1.6041 19 6 0.5673 4.9382 2.6628 20 6 0.4396 5.6807 3.8352 21 6 1.4743 5.7191 4.7467 22 6 2.6467 5.0271 4.5032 23 6 2.7786 4.2825 3.3441 24 6 4.0517 3.5219 3.0767 25 6 1.7476 4.2431 2.4324 26 1 -0.3633 -1.0258 0.0616 27 1 -0.3633 0.5663 0.8575 28 1 -0.3633 0.4595 -0.9193 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.8230 0.3232 -2.1114 32 1 0.8064 1.7156 1.6254 33 1 -1.2055 5.1407 1.5614 34 1 -0.4709 6.2278 4.0302 35 1 1.3699 6.2965 5.6533 36 1 3.4554 5.0637 5.2181 37 1 4.7494 4.1605 2.5348 38 1 4.4982 3.2167 4.0230 39 1 3.8283 2.6384 2.4787 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:27 Heat of formation + Delta-G solvation = -17.760385 kcal Electronic energy + Delta-G solvation = -21757.827609 eV Core-core repulsion = 18664.469260 eV Total energy + Delta-G solvation = -3093.358349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.61021 -39.59114 -38.13054 -36.83939 -34.65208 -33.93338 -32.58862 -30.47604 -29.33651 -28.13411 -26.64346 -24.33074 -23.08174 -22.27611 -21.72680 -21.64212 -18.89028 -18.44202 -17.79917 -17.33077 -16.84739 -16.57047 -16.30409 -15.65716 -15.52057 -14.93263 -14.70277 -14.60203 -14.36332 -14.13508 -13.76992 -13.55255 -13.44445 -13.30446 -13.00633 -12.74318 -12.62579 -12.31352 -12.20803 -11.95894 -11.69587 -11.63372 -11.56004 -11.25440 -11.10340 -10.64429 -9.54739 -9.21041 -8.94771 -8.26214 -6.21761 0.20035 0.47636 1.28344 1.33898 1.35831 1.44875 1.95819 2.34830 2.87059 3.04582 3.07229 3.37504 3.65165 3.96971 4.20174 4.23322 4.30890 4.37239 4.44898 4.50052 4.57370 4.65267 4.84933 4.89478 4.96649 5.01881 5.04076 5.08252 5.19950 5.22925 5.42037 5.50242 5.56028 5.65878 5.74302 5.77793 5.86430 5.97037 6.16086 6.30874 6.70885 6.86740 6.89309 7.40720 8.89565 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.006742 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.556090 B = 4151.886404 C = 4916.442530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.194 3.806 4 H -0.008 1.008 5 C -0.498 4.498 6 H 0.056 0.944 7 C 0.026 3.974 8 N -0.936 5.936 9 Si 0.906 3.094 10 H -0.289 1.289 11 H -0.283 1.283 12 H -0.234 1.234 13 N -0.630 5.630 14 C 0.101 3.899 15 H 0.099 0.901 16 C 0.496 3.504 17 O -0.536 6.536 18 N -0.644 5.644 19 C 0.128 3.872 20 C -0.139 4.139 21 C -0.074 4.074 22 C -0.143 4.143 23 C -0.023 4.023 24 C -0.123 4.123 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.263 0.737 32 H 0.333 0.667 33 H 0.421 0.579 34 H 0.155 0.845 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 9.941 13.560 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.085 3.915 4 H 0.010 0.990 5 C -0.536 4.536 6 H 0.074 0.926 7 C -0.172 4.172 8 N -0.577 5.577 9 Si 0.732 3.268 10 H -0.216 1.216 11 H -0.209 1.209 12 H -0.157 1.157 13 N -0.262 5.262 14 C -0.012 4.012 15 H 0.117 0.883 16 C 0.281 3.719 17 O -0.411 6.411 18 N -0.288 5.288 19 C 0.032 3.968 20 C -0.160 4.160 21 C -0.093 4.093 22 C -0.162 4.162 23 C -0.024 4.024 24 C -0.180 4.180 25 C -0.146 4.146 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.262 0.738 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.167 0.833 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.547 9.601 13.044 19.327 hybrid contribution -1.073 -0.097 -2.013 2.283 sum -11.620 9.504 11.031 18.628 Atomic orbital electron populations 1.21785 0.95686 1.01997 1.00654 1.22021 0.95047 0.98018 1.01534 1.19480 0.94375 0.91217 0.86432 0.99029 1.21217 0.90804 1.38740 1.02864 0.92618 1.25493 0.95532 0.95188 1.00967 1.70059 1.12469 1.45932 1.29223 0.86529 0.82046 0.77455 0.80765 1.21589 1.20914 1.15689 1.60644 1.36632 0.99278 1.29604 1.20888 0.93054 0.91216 0.96049 0.88292 1.21907 0.90009 0.77616 0.82324 1.90757 1.68324 1.56913 1.25135 1.43521 1.18711 1.47510 1.19084 1.18391 0.89048 0.99007 0.90362 1.20667 1.02168 1.01654 0.91502 1.21260 0.91411 0.97436 0.99163 1.21319 0.99764 0.98396 0.96711 1.19270 0.94252 0.95727 0.93120 1.20866 0.94161 1.00293 1.02659 1.19591 0.95857 1.02461 0.96728 0.90969 0.92829 0.94488 0.93210 0.91669 0.92772 0.84767 0.73834 0.82742 0.81518 0.83255 0.92152 0.90189 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.80 71.98 0.71 -4.41 16 2 C -0.13 -5.50 4.70 30.59 0.14 -5.36 16 3 C 0.19 9.19 1.43 44.17 0.06 9.25 16 4 H -0.01 -0.41 6.06 -2.38 -0.01 -0.42 16 5 C -0.50 -27.91 9.02 25.60 0.23 -27.68 16 6 H 0.06 3.40 6.65 -2.91 -0.02 3.38 16 7 C 0.03 1.52 5.34 84.65 0.45 1.98 16 8 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 9 Si 0.91 45.22 25.70 68.60 1.76 46.98 16 10 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 11 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.23 -10.97 5.34 99.48 0.53 -10.44 16 13 N -0.63 -25.63 5.26 -479.17 -2.52 -28.15 16 14 C 0.10 3.86 2.73 43.79 0.12 3.98 16 15 H 0.10 4.38 7.73 -2.39 -0.02 4.36 16 16 C 0.50 17.73 7.99 87.94 0.70 18.44 16 17 O -0.54 -22.70 17.47 -3.03 -0.05 -22.75 16 18 N -0.64 -16.84 5.88 -303.21 -1.78 -18.62 16 19 C 0.13 3.23 7.11 38.35 0.27 3.50 16 20 C -0.14 -2.44 10.07 22.47 0.23 -2.22 16 21 C -0.07 -1.16 10.02 22.21 0.22 -0.94 16 22 C -0.14 -2.90 9.73 22.32 0.22 -2.69 16 23 C -0.02 -0.65 5.87 -19.96 -0.12 -0.77 16 24 C -0.12 -3.95 9.92 71.23 0.71 -3.24 16 25 C -0.14 -4.48 5.77 -19.70 -0.11 -4.59 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.76 6.38 -2.39 -0.02 1.75 16 28 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.05 2.26 4.60 -2.39 -0.01 2.25 16 30 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.33 12.44 6.23 -89.70 -0.56 11.88 16 33 H 0.42 8.28 8.96 -92.70 -0.83 7.45 16 34 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.08 2.13 8.09 -2.39 -0.02 2.11 16 39 H 0.07 2.69 5.61 -2.39 -0.01 2.68 16 Total: -1.00 -70.01 312.67 1.06 -68.95 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.47 Total: 26.00 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 3.83 Total: -14.75 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -4.01 Total: -104.43 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.76 Total: 46.98 kcal Total: -70.01 1.06 -68.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.190 kcal (2) G-P(sol) polarization free energy of solvation -70.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds