Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 H 1.08998 * 109.47022 * 175.21444 * 3 2 1 5 5 C 1.50707 * 109.47053 * 55.21890 * 3 2 1 6 6 H 1.08002 * 119.99642 * 240.00177 * 5 3 2 7 7 C 1.37872 * 119.99996 * 59.99560 * 5 3 2 8 8 N 1.31517 * 120.00233 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00030 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47203 * 90.00116 * 9 7 5 11 11 H 1.48497 * 109.47479 * 209.99798 * 9 7 5 12 12 H 1.48502 * 109.47324 * 330.00481 * 9 7 5 13 13 N 1.46893 * 109.47439 * 295.21934 * 3 2 1 14 14 C 1.46902 * 110.99822 * 272.56376 * 13 3 2 15 15 H 1.09000 * 109.14003 * 32.60104 * 14 13 3 16 16 C 1.50398 * 109.14755 * 151.81398 * 14 13 3 17 17 C 1.38668 * 118.73958 * 321.07268 * 16 14 13 18 18 C 1.38041 * 120.33257 * 179.97438 * 17 16 14 19 19 C 1.38269 * 119.82415 * 0.02562 * 18 17 16 20 20 C 1.38007 * 119.87615 * 0.03130 * 19 18 17 21 21 C 1.37827 * 121.37804 * 141.05437 * 16 14 13 22 22 C 1.50271 * 121.66308 * 0.16362 * 21 16 14 23 23 N 1.45275 * 111.99707 * 338.47888 * 22 21 16 24 24 C 1.33429 * 123.56359 * 22.00484 * 23 22 21 25 25 O 1.21277 * 118.58062 * 179.40758 * 24 23 22 26 26 H 1.08992 * 109.47252 * 297.89319 * 1 2 3 27 27 H 1.09003 * 109.46959 * 57.89843 * 1 2 3 28 28 H 1.09006 * 109.47029 * 177.89628 * 1 2 3 29 29 H 1.08997 * 109.46995 * 240.00239 * 2 1 3 30 30 H 1.08999 * 109.47062 * 120.00382 * 2 1 3 31 31 H 0.96995 * 120.00187 * 180.02562 * 8 7 5 32 32 H 1.00903 * 111.00201 * 36.51715 * 13 3 2 33 33 H 1.07994 * 119.83309 * 359.91628 * 17 16 14 34 34 H 1.08002 * 120.08839 * 180.02562 * 18 17 16 35 35 H 1.07997 * 120.05632 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.80945 * 179.97438 * 20 19 18 37 37 H 1.08994 * 108.97729 * 99.12506 * 22 21 16 38 38 H 1.08994 * 108.97419 * 217.83153 * 22 21 16 39 39 H 0.97003 * 118.21923 * 202.04269 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0857 5 6 1.4432 2.1863 1.1670 6 1 0.8329 3.0606 0.9950 7 6 1.6763 1.7505 2.4541 8 7 2.4198 0.6861 2.6636 9 14 0.9360 2.6720 3.9006 10 1 -0.4003 2.1064 4.2163 11 1 1.8239 2.5332 5.0828 12 1 0.7957 4.1088 3.5528 13 7 1.6469 2.1009 -1.2529 14 6 2.6471 1.8721 -2.3042 15 1 3.0963 0.8891 -2.1622 16 6 1.9707 1.9162 -3.6467 17 6 0.7119 1.3495 -3.7780 18 6 0.0608 1.3720 -4.9951 19 6 0.6672 1.9621 -6.0886 20 6 1.9205 2.5252 -5.9589 21 6 2.5758 2.5050 -4.7362 22 6 3.9398 3.1280 -4.6398 23 7 4.2828 3.4780 -3.2722 24 6 3.7145 2.9180 -2.2027 25 8 4.0778 3.2711 -1.1009 26 1 -0.3633 0.4807 0.9082 27 1 -0.3633 0.5461 -0.8706 28 1 -0.3633 -1.0270 -0.0377 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.5834 0.3793 3.5691 32 1 0.7327 1.7949 -1.5508 33 1 0.2390 0.8875 -2.9242 34 1 -0.9197 0.9298 -5.0928 35 1 0.1611 1.9821 -7.0424 36 1 2.3933 2.9855 -6.8139 37 1 4.6789 2.4236 -5.0213 38 1 3.9619 4.0291 -5.2525 39 1 4.9615 4.1560 -3.1287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = 1.120842 kcal Electronic energy + Delta-G solvation = -21675.887303 eV Core-core repulsion = 18583.347706 eV Total energy + Delta-G solvation = -3092.539598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58994 -38.39486 -36.50389 -35.05935 -33.22406 -31.23440 -31.14141 -29.64129 -27.41267 -25.92062 -24.87303 -23.33621 -22.19820 -21.78649 -19.37052 -18.82597 -17.29348 -16.77464 -16.14069 -15.71889 -15.27759 -14.82175 -14.57999 -14.41261 -14.23189 -13.66699 -13.23395 -13.14331 -13.03535 -12.70529 -12.56532 -12.11573 -11.90792 -11.67396 -11.19759 -11.09803 -10.81418 -10.56811 -10.50096 -9.99352 -9.76434 -9.67538 -9.37802 -9.03870 -8.87333 -8.71388 -8.54884 -8.20512 -7.26155 -5.85023 -3.84087 1.26497 1.34286 3.16397 3.40678 3.47327 3.51583 3.53508 3.76394 4.50081 4.56717 4.72477 4.85826 4.89753 5.12261 5.18714 5.23788 5.41784 5.46806 5.47613 5.68278 5.77050 5.95393 5.95684 6.32558 6.33840 6.36940 6.47715 6.50275 6.57445 6.85547 6.92777 7.09867 7.27200 7.32834 7.49748 7.60852 7.73093 7.98292 8.35046 8.54646 8.67327 8.76011 9.18794 9.77328 11.22989 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.005817 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.494618 B = 4812.557818 C = 5547.637812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.149 4.149 3 C 0.216 3.784 4 H 0.048 0.952 5 C -0.476 4.476 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.662 5.662 14 C 0.111 3.889 15 H 0.082 0.918 16 C -0.065 4.065 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.098 4.098 22 C 0.158 3.842 23 N -0.731 5.731 24 C 0.526 3.474 25 O -0.505 6.505 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.024 0.976 29 H 0.009 0.991 30 H 0.097 0.903 31 H 0.257 0.743 32 H 0.334 0.666 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 0.632 -19.044 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.189 4.189 3 C 0.109 3.891 4 H 0.066 0.934 5 C -0.515 4.515 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.298 5.298 14 C -0.002 4.002 15 H 0.099 0.901 16 C -0.065 4.065 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.141 4.141 20 C -0.130 4.130 21 C -0.099 4.099 22 C 0.034 3.966 23 N -0.387 5.387 24 C 0.310 3.690 25 O -0.377 6.377 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.027 0.973 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.417 1.153 -18.089 18.131 hybrid contribution -0.351 -0.281 0.500 0.672 sum -0.768 0.872 -17.590 17.628 Atomic orbital electron populations 1.21593 0.97735 0.98002 1.01241 1.22191 0.94939 1.01356 1.00397 1.19371 0.97090 0.87902 0.84756 0.93413 1.20958 1.29911 1.11124 0.89508 0.92227 1.24864 0.95669 0.95268 0.98594 1.69871 1.39140 1.24189 1.20668 0.86572 0.78643 0.80411 0.82214 1.21013 1.21494 1.19994 1.60772 1.02308 1.63958 1.02727 1.19963 0.93846 0.96692 0.89671 0.90094 1.19679 0.95158 0.97426 0.94276 1.21178 0.94326 0.99212 0.98062 1.21113 0.99897 0.99399 0.92754 1.21035 0.95385 0.98982 0.98741 1.20899 0.95314 1.00463 0.96288 1.19562 0.96376 1.00151 0.93844 1.19861 0.93024 0.99773 0.83986 1.45335 1.43754 1.44098 1.05518 1.19985 0.82493 0.82624 0.83862 1.90825 1.61024 1.60594 1.25229 0.91347 0.95445 0.95714 0.97264 0.88511 0.93283 0.84250 0.85341 0.85818 0.85979 0.85861 0.90986 0.89816 0.76530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.40 37.16 0.35 -2.35 16 2 C -0.15 -3.51 5.50 -26.73 -0.15 -3.66 16 3 C 0.22 5.55 1.76 -68.87 -0.12 5.43 16 4 H 0.05 1.41 6.76 -51.93 -0.35 1.06 16 5 C -0.48 -13.53 7.40 -34.44 -0.25 -13.79 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.59 5.28 -17.82 -0.09 1.50 16 8 N -0.90 -26.32 11.37 55.43 0.63 -25.69 16 9 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.66 -14.59 5.88 -104.03 -0.61 -15.20 16 14 C 0.11 2.12 2.66 -70.60 -0.19 1.93 16 15 H 0.08 1.59 7.25 -51.93 -0.38 1.21 16 16 C -0.06 -0.99 5.59 -104.76 -0.59 -1.58 16 17 C -0.11 -1.54 8.91 -39.49 -0.35 -1.89 16 18 C -0.11 -1.29 10.05 -39.64 -0.40 -1.69 16 19 C -0.12 -1.24 10.05 -39.65 -0.40 -1.64 16 20 C -0.11 -1.13 9.64 -39.48 -0.38 -1.51 16 21 C -0.10 -1.24 5.81 -104.79 -0.61 -1.84 16 22 C 0.16 1.68 6.99 -6.06 -0.04 1.64 16 23 N -0.73 -10.46 5.45 -63.20 -0.34 -10.81 16 24 C 0.53 10.37 7.52 -12.03 -0.09 10.28 16 25 O -0.50 -12.54 16.04 5.56 0.09 -12.45 16 26 H 0.07 1.59 7.14 -51.93 -0.37 1.22 16 27 H 0.03 0.51 5.68 -51.93 -0.30 0.21 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.01 0.19 7.60 -51.93 -0.39 -0.21 16 30 H 0.10 2.57 6.21 -51.93 -0.32 2.25 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.33 6.74 3.80 -39.29 -0.15 6.59 16 33 H 0.13 1.87 5.78 -52.49 -0.30 1.56 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.40 5.01 8.82 -40.82 -0.36 4.65 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -33.37 309.87 -8.90 -42.27 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.00 Total: 9.04 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.31 Total: -9.17 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.33 Total: -51.70 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.37 -8.90 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.393 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds