Wall clock time and date at job start Mon Mar 30 2020 01:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 H 1.08998 * 109.47022 * 175.21444 * 3 2 1 5 5 C 1.50707 * 109.47053 * 55.21890 * 3 2 1 6 6 H 1.08002 * 119.99642 * 240.00177 * 5 3 2 7 7 C 1.37872 * 119.99996 * 59.99560 * 5 3 2 8 8 N 1.31517 * 120.00233 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00030 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47203 * 90.00116 * 9 7 5 11 11 H 1.48497 * 109.47479 * 209.99798 * 9 7 5 12 12 H 1.48502 * 109.47324 * 330.00481 * 9 7 5 13 13 N 1.46893 * 109.47439 * 295.21934 * 3 2 1 14 14 C 1.46902 * 110.99822 * 272.56376 * 13 3 2 15 15 H 1.09000 * 109.14003 * 32.60104 * 14 13 3 16 16 C 1.50398 * 109.14755 * 151.81398 * 14 13 3 17 17 C 1.38668 * 118.73958 * 321.07268 * 16 14 13 18 18 C 1.38041 * 120.33257 * 179.97438 * 17 16 14 19 19 C 1.38269 * 119.82415 * 0.02562 * 18 17 16 20 20 C 1.38007 * 119.87615 * 0.03130 * 19 18 17 21 21 C 1.37827 * 121.37804 * 141.05437 * 16 14 13 22 22 C 1.50271 * 121.66308 * 0.16362 * 21 16 14 23 23 N 1.45275 * 111.99707 * 338.47888 * 22 21 16 24 24 C 1.33429 * 123.56359 * 22.00484 * 23 22 21 25 25 O 1.21277 * 118.58062 * 179.40758 * 24 23 22 26 26 H 1.08992 * 109.47252 * 297.89319 * 1 2 3 27 27 H 1.09003 * 109.46959 * 57.89843 * 1 2 3 28 28 H 1.09006 * 109.47029 * 177.89628 * 1 2 3 29 29 H 1.08997 * 109.46995 * 240.00239 * 2 1 3 30 30 H 1.08999 * 109.47062 * 120.00382 * 2 1 3 31 31 H 0.96995 * 120.00187 * 180.02562 * 8 7 5 32 32 H 1.00903 * 111.00201 * 36.51715 * 13 3 2 33 33 H 1.07994 * 119.83309 * 359.91628 * 17 16 14 34 34 H 1.08002 * 120.08839 * 180.02562 * 18 17 16 35 35 H 1.07997 * 120.05632 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.80945 * 179.97438 * 20 19 18 37 37 H 1.08994 * 108.97729 * 99.12506 * 22 21 16 38 38 H 1.08994 * 108.97419 * 217.83153 * 22 21 16 39 39 H 0.97003 * 118.21923 * 202.04269 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0857 5 6 1.4432 2.1863 1.1670 6 1 0.8329 3.0606 0.9950 7 6 1.6763 1.7505 2.4541 8 7 2.4198 0.6861 2.6636 9 14 0.9360 2.6720 3.9006 10 1 -0.4003 2.1064 4.2163 11 1 1.8239 2.5332 5.0828 12 1 0.7957 4.1088 3.5528 13 7 1.6469 2.1009 -1.2529 14 6 2.6471 1.8721 -2.3042 15 1 3.0963 0.8891 -2.1622 16 6 1.9707 1.9162 -3.6467 17 6 0.7119 1.3495 -3.7780 18 6 0.0608 1.3720 -4.9951 19 6 0.6672 1.9621 -6.0886 20 6 1.9205 2.5252 -5.9589 21 6 2.5758 2.5050 -4.7362 22 6 3.9398 3.1280 -4.6398 23 7 4.2828 3.4780 -3.2722 24 6 3.7145 2.9180 -2.2027 25 8 4.0778 3.2711 -1.1009 26 1 -0.3633 0.4807 0.9082 27 1 -0.3633 0.5461 -0.8706 28 1 -0.3633 -1.0270 -0.0377 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.5834 0.3793 3.5691 32 1 0.7327 1.7949 -1.5508 33 1 0.2390 0.8875 -2.9242 34 1 -0.9197 0.9298 -5.0928 35 1 0.1611 1.9821 -7.0424 36 1 2.3933 2.9855 -6.8139 37 1 4.6789 2.4236 -5.0213 38 1 3.9619 4.0291 -5.2525 39 1 4.9615 4.1560 -3.1287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:10 Heat of formation + Delta-G solvation = -23.533370 kcal Electronic energy + Delta-G solvation = -21676.956390 eV Core-core repulsion = 18583.347706 eV Total energy + Delta-G solvation = -3093.608685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82718 -39.62742 -38.24076 -36.33886 -34.94584 -33.09428 -32.15332 -31.02880 -28.86517 -27.68758 -26.09085 -25.27815 -23.36444 -22.83035 -21.23023 -20.09852 -18.59818 -18.06054 -17.97040 -17.22353 -16.62847 -16.48502 -15.95487 -15.64965 -15.31614 -15.21335 -14.70992 -14.62092 -14.41288 -14.26376 -13.78614 -13.72420 -13.52460 -12.95823 -12.82004 -12.63665 -12.48401 -12.19210 -12.05465 -11.91005 -11.66415 -11.53579 -11.13914 -10.74492 -10.39425 -10.22995 -9.79604 -9.52739 -8.99047 -8.04371 -6.11157 0.34376 0.44414 1.39058 1.41447 1.51914 1.65788 2.30826 2.45898 2.83790 3.24573 3.48420 3.63585 3.70079 3.75949 3.97734 4.21855 4.30973 4.48270 4.48852 4.56275 4.61862 4.66900 4.70313 4.75679 5.00992 5.02594 5.11403 5.32231 5.37688 5.51177 5.54106 5.60811 5.67740 5.73564 5.79070 5.97259 6.08482 6.22526 6.33232 6.63043 6.78494 6.96638 7.32588 7.54276 9.02049 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.005817 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.494618 B = 4812.557818 C = 5547.637812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.140 4.140 3 C 0.228 3.772 4 H -0.003 1.003 5 C -0.492 4.492 6 H 0.045 0.955 7 C 0.010 3.990 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.670 5.670 14 C 0.115 3.885 15 H 0.061 0.939 16 C -0.096 4.096 17 C -0.129 4.129 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.101 4.101 21 C -0.106 4.106 22 C 0.149 3.851 23 N -0.713 5.713 24 C 0.518 3.482 25 O -0.574 6.574 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.258 0.742 32 H 0.343 0.657 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 1.245 -22.733 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.180 4.180 3 C 0.120 3.880 4 H 0.015 0.985 5 C -0.531 4.531 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.306 5.306 14 C 0.001 3.999 15 H 0.079 0.921 16 C -0.097 4.097 17 C -0.148 4.148 18 C -0.133 4.133 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.107 4.107 22 C 0.026 3.974 23 N -0.367 5.367 24 C 0.304 3.696 25 O -0.452 6.452 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.167 0.833 33 H 0.131 0.869 34 H 0.163 0.837 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.626 1.768 -21.860 21.991 hybrid contribution 0.061 -0.455 1.440 1.512 sum -1.566 1.313 -20.419 20.521 Atomic orbital electron populations 1.21461 0.95435 0.99715 1.00905 1.21988 0.96898 0.99628 0.99472 1.18969 0.93819 0.89206 0.86024 0.98465 1.21176 1.29934 1.10923 0.91041 0.93711 1.25596 0.96055 0.96057 1.01023 1.70015 1.39973 1.25263 1.21088 0.85633 0.78509 0.78909 0.79022 1.19364 1.21159 1.20310 1.60528 1.03623 1.63775 1.02712 1.19832 0.93238 0.95532 0.91259 0.92139 1.19478 0.96276 1.00853 0.93048 1.21155 0.94350 1.00215 0.99055 1.21404 1.00701 0.99204 0.92003 1.21530 0.95237 0.96833 0.99558 1.21334 0.95100 0.99290 0.96186 1.19835 0.97175 0.99724 0.93990 1.20351 0.92856 1.02401 0.81766 1.45217 1.42532 1.42757 1.06161 1.20212 0.82543 0.82751 0.84128 1.90785 1.63288 1.63080 1.28073 0.93915 0.93271 0.93097 0.95681 0.91772 0.93286 0.83289 0.86940 0.83654 0.82325 0.81723 0.88303 0.85505 0.75420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.40 71.98 0.68 -4.33 16 2 C -0.14 -6.91 5.50 30.59 0.17 -6.75 16 3 C 0.23 12.50 1.76 44.17 0.08 12.57 16 4 H 0.00 -0.17 6.76 -2.39 -0.02 -0.18 16 5 C -0.49 -29.40 7.40 25.60 0.19 -29.21 16 6 H 0.04 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.60 5.28 84.65 0.45 1.05 16 8 N -0.92 -56.45 11.37 21.45 0.24 -56.20 16 9 Si 0.95 47.19 29.54 68.60 2.03 49.22 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 13 N -0.67 -31.17 5.88 -483.03 -2.84 -34.01 16 14 C 0.11 4.57 2.66 43.04 0.11 4.69 16 15 H 0.06 2.58 7.25 -2.39 -0.02 2.56 16 16 C -0.10 -2.89 5.59 -19.95 -0.11 -3.00 16 17 C -0.13 -3.52 8.91 22.33 0.20 -3.33 16 18 C -0.12 -2.26 10.05 22.23 0.22 -2.04 16 19 C -0.11 -1.70 10.05 22.22 0.22 -1.48 16 20 C -0.10 -1.52 9.64 22.34 0.22 -1.30 16 21 C -0.11 -2.34 5.81 -19.98 -0.12 -2.46 16 22 C 0.15 2.63 6.99 85.73 0.60 3.23 16 23 N -0.71 -19.86 5.45 -473.02 -2.58 -22.43 16 24 C 0.52 21.38 7.52 87.58 0.66 22.04 16 25 O -0.57 -30.64 16.04 -3.02 -0.05 -30.69 16 26 H 0.04 2.02 7.14 -2.39 -0.02 2.00 16 27 H 0.05 1.84 5.68 -2.39 -0.01 1.83 16 28 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.02 1.11 7.60 -2.39 -0.02 1.10 16 30 H 0.06 3.59 6.21 -2.39 -0.01 3.58 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 32 H 0.34 14.38 3.80 -89.69 -0.34 14.04 16 33 H 0.11 3.30 5.78 -2.91 -0.02 3.28 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.13 1.26 8.10 -2.39 -0.02 1.24 16 39 H 0.41 9.93 8.82 -92.71 -0.82 9.11 16 Total: -1.00 -79.66 309.87 0.29 -79.37 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.07 Total: 25.06 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 3.56 Total: -10.31 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.18 Total: -112.64 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.05 Total: -30.69 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -79.66 0.29 -79.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.837 kcal (2) G-P(sol) polarization free energy of solvation -79.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds