Wall clock time and date at job start Mon Mar 30 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47135 * 2 1 4 4 H 1.09004 * 109.47729 * 185.18020 * 3 2 1 5 5 C 1.50700 * 109.47115 * 305.18135 * 3 2 1 6 6 H 1.08003 * 120.00244 * 119.99998 * 5 3 2 7 7 C 1.37880 * 120.00043 * 299.99667 * 5 3 2 8 8 N 1.31517 * 119.99946 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99847 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47162 * 89.99730 * 9 7 5 11 11 H 1.48504 * 109.47081 * 210.00109 * 9 7 5 12 12 H 1.48501 * 109.47137 * 329.99518 * 9 7 5 13 13 N 1.46908 * 109.47214 * 65.17941 * 3 2 1 14 14 C 1.46899 * 110.99538 * 85.90019 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.80888 * 14 13 3 16 16 C 1.38301 * 120.08982 * 269.72641 * 15 14 13 17 17 C 1.37940 * 120.37628 * 179.73776 * 16 15 14 18 18 C 1.39361 * 120.13179 * 0.52489 * 17 16 15 19 19 C 1.38907 * 118.94301 * 359.75339 * 18 17 16 20 20 C 1.37678 * 120.80931 * 359.97438 * 19 18 17 21 21 C 1.51143 * 106.34110 * 180.02562 * 19 18 17 22 22 C 1.51397 * 104.06535 * 0.02562 * 21 19 18 23 23 O 1.21288 * 126.43893 * 179.97438 * 22 21 19 24 24 N 1.34371 * 107.11616 * 359.97438 * 22 21 19 25 25 H 1.08996 * 109.47091 * 174.85543 * 1 2 3 26 26 H 1.08993 * 109.47309 * 54.85328 * 1 2 3 27 27 H 1.09003 * 109.46893 * 294.85163 * 1 2 3 28 28 H 1.08994 * 109.47406 * 120.00325 * 2 1 3 29 29 H 1.08997 * 109.47486 * 240.00424 * 2 1 3 30 30 H 0.96997 * 119.99706 * 180.02562 * 8 7 5 31 31 H 1.00899 * 110.99770 * 321.94983 * 13 3 2 32 32 H 1.08995 * 109.47219 * 294.80719 * 14 13 3 33 33 H 1.08999 * 109.47280 * 54.81395 * 14 13 3 34 34 H 1.08002 * 119.80972 * 359.97438 * 16 15 14 35 35 H 1.08004 * 119.93314 * 180.27617 * 17 16 15 36 36 H 1.07997 * 120.03993 * 180.02562 * 20 19 18 37 37 H 1.09003 * 110.50350 * 118.64597 * 21 19 18 38 38 H 1.08998 * 110.51021 * 241.35679 * 21 19 18 39 39 H 0.96996 * 123.87068 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4440 -0.0928 5 6 1.4356 2.1890 -1.1613 6 1 0.8265 3.0629 -0.9833 7 6 1.6603 1.7563 -2.4510 8 7 1.1333 2.4080 -3.4645 9 14 2.7133 0.2444 -2.7588 10 1 1.8520 -0.9653 -2.7675 11 1 3.3961 0.3755 -4.0710 12 1 3.7290 0.1211 -1.6825 13 7 1.6551 2.0980 1.2571 14 6 2.6440 1.8364 2.3114 15 6 2.2844 2.6252 3.5441 16 6 2.7852 3.9022 3.7207 17 6 2.4556 4.6316 4.8442 18 6 1.6225 4.0808 5.8163 19 6 1.1306 2.7952 5.6301 20 6 1.4566 2.0715 4.5051 21 6 0.2728 2.4893 6.8363 22 6 0.3611 3.7443 7.6784 23 8 -0.1824 3.9354 8.7457 24 7 1.1547 4.6066 7.0211 25 1 -0.3633 -1.0235 -0.0921 26 1 -0.3633 0.5916 -0.8402 27 1 -0.3633 0.4319 0.9325 28 1 1.8933 -0.5138 0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.2911 2.1034 -4.3717 31 1 0.7325 1.8102 1.5472 32 1 2.6488 0.7727 2.5492 33 1 3.6329 2.1356 1.9643 34 1 3.4349 4.3323 2.9729 35 1 2.8471 5.6299 4.9727 36 1 1.0668 1.0731 4.3728 37 1 -0.7581 2.3039 6.5346 38 1 0.6719 1.6341 7.3817 39 1 1.3769 5.4928 7.3468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:49 Heat of formation + Delta-G solvation = -20.830118 kcal Electronic energy + Delta-G solvation = -20449.107408 eV Core-core repulsion = 17355.615945 eV Total energy + Delta-G solvation = -3093.491463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.36730 -39.73401 -38.48635 -36.84992 -34.41885 -33.21516 -33.08170 -30.58854 -29.08360 -28.49690 -25.67572 -24.92635 -23.16600 -22.14310 -21.89002 -21.27174 -18.87708 -18.48446 -17.71348 -17.07554 -17.00985 -16.60259 -16.16717 -15.55156 -15.29954 -15.19802 -14.86931 -14.61401 -14.39022 -14.25622 -13.92662 -13.90652 -13.40136 -13.36513 -13.05448 -12.72420 -12.44614 -12.23704 -12.09874 -11.81300 -11.72437 -11.57644 -11.30361 -11.20784 -11.03962 -10.63154 -9.75383 -9.02382 -8.81896 -8.19187 -6.18393 0.18596 0.44428 1.34047 1.38622 1.41321 1.47699 2.02424 2.37949 2.79319 3.12785 3.16141 3.45165 3.76516 3.92495 4.07637 4.26358 4.33009 4.36312 4.39150 4.51158 4.53625 4.56121 4.67980 4.80250 4.90446 4.99275 5.08434 5.12918 5.18946 5.21809 5.34320 5.37846 5.61538 5.64216 5.75890 5.78743 5.81656 6.05607 6.12624 6.77207 6.83782 6.88524 6.92555 7.44975 8.98182 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.035698 B = 0.003622 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.168242 B = 7727.768386 C = 7980.291564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.157 4.157 3 C 0.190 3.810 4 H 0.028 0.972 5 C -0.483 4.483 6 H 0.035 0.965 7 C 0.012 3.988 8 N -0.953 5.953 9 Si 0.942 3.058 10 H -0.269 1.269 11 H -0.305 1.305 12 H -0.248 1.248 13 N -0.678 5.678 14 C 0.099 3.901 15 C -0.095 4.095 16 C -0.075 4.075 17 C -0.132 4.132 18 C 0.121 3.879 19 C -0.145 4.145 20 C -0.063 4.063 21 C -0.107 4.107 22 C 0.525 3.475 23 O -0.550 6.550 24 N -0.651 5.651 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.262 0.738 31 H 0.338 0.662 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.231 -2.301 19.571 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.196 4.196 3 C 0.081 3.919 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.053 0.947 7 C -0.185 4.185 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.233 1.233 12 H -0.172 1.172 13 N -0.310 5.310 14 C -0.030 4.030 15 C -0.097 4.097 16 C -0.095 4.095 17 C -0.153 4.153 18 C 0.024 3.976 19 C -0.147 4.147 20 C -0.082 4.082 21 C -0.146 4.146 22 C 0.315 3.685 23 O -0.429 6.429 24 N -0.294 5.294 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.157 0.843 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.142 -1.675 19.835 20.152 hybrid contribution 0.261 -0.656 -0.587 0.918 sum 3.403 -2.331 19.248 19.685 Atomic orbital electron populations 1.21576 0.95166 1.00484 1.01900 1.22425 0.97857 0.99388 0.99921 1.19480 0.95073 0.89139 0.88243 0.95418 1.21134 1.29676 1.11336 0.90035 0.94690 1.25680 0.97066 0.99753 0.95956 1.70047 1.47520 1.42601 0.99310 0.85968 0.79917 0.80368 0.76765 1.19518 1.23335 1.17198 1.60498 1.05041 1.62904 1.02524 1.20878 0.96380 0.96872 0.88857 1.19782 0.98914 0.95562 0.95432 1.20943 0.98839 0.93413 0.96263 1.20519 1.00100 1.01491 0.93184 1.18236 0.97918 0.94002 0.87452 1.19851 1.02525 0.94751 0.97602 1.20277 0.96343 1.00325 0.91249 1.21089 1.03236 0.97278 0.92976 1.20970 0.76478 0.86761 0.84332 1.90792 1.48894 1.80842 1.22358 1.43673 1.47028 1.19166 1.19498 0.92796 0.94052 0.91948 0.91318 0.94655 0.92929 0.84308 0.93644 0.91013 0.84923 0.83735 0.83941 0.84421 0.83950 0.74126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 9.40 71.98 0.68 -4.12 16 2 C -0.16 -5.87 5.22 30.59 0.16 -5.71 16 3 C 0.19 8.10 1.93 44.17 0.09 8.19 16 4 H 0.03 1.23 6.76 -2.38 -0.02 1.21 16 5 C -0.48 -26.25 7.83 25.60 0.20 -26.05 16 6 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 7 C 0.01 0.66 5.42 84.66 0.46 1.12 16 8 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 9 Si 0.94 43.55 24.32 68.60 1.67 45.22 16 10 H -0.27 -11.88 6.92 99.48 0.69 -11.20 16 11 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.25 -10.47 6.53 99.48 0.65 -9.82 16 13 N -0.68 -24.31 6.19 -499.44 -3.09 -27.40 16 14 C 0.10 2.72 5.64 85.56 0.48 3.20 16 15 C -0.10 -2.25 5.45 -19.81 -0.11 -2.36 16 16 C -0.08 -1.69 9.68 22.21 0.21 -1.48 16 17 C -0.13 -2.51 10.07 22.47 0.23 -2.29 16 18 C 0.12 2.30 7.11 38.35 0.27 2.58 16 19 C -0.14 -2.69 6.35 -19.70 -0.13 -2.81 16 20 C -0.06 -1.25 9.70 22.17 0.22 -1.03 16 21 C -0.11 -1.63 6.88 29.46 0.20 -1.42 16 22 C 0.52 10.79 8.71 87.94 0.77 11.55 16 23 O -0.55 -15.23 18.03 -3.05 -0.06 -15.29 16 24 N -0.65 -11.42 5.88 -303.21 -1.78 -13.20 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.81 6.85 -2.39 -0.02 1.79 16 27 H 0.06 1.93 6.63 -2.39 -0.02 1.91 16 28 H 0.07 2.11 7.50 -2.39 -0.02 2.09 16 29 H 0.04 1.42 3.42 -2.39 -0.01 1.41 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.34 11.42 6.69 -89.69 -0.60 10.82 16 32 H 0.05 1.11 7.48 -2.39 -0.02 1.09 16 33 H 0.07 2.04 7.87 -2.39 -0.02 2.02 16 34 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.42 5.71 8.96 -92.71 -0.83 4.88 16 Total: -1.00 -68.77 315.46 0.34 -68.43 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.42 Total: 21.31 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 3.73 Total: -20.64 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.58 Total: -99.03 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.06 Total: -15.29 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.67 Total: 45.22 kcal Total: -68.77 0.34 -68.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.599 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds