Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46889 * 2 1 4 4 H 1.08996 * 109.47045 * 304.99413 * 3 2 1 5 5 F 1.39899 * 109.47085 * 65.00007 * 3 2 1 6 6 C 1.50701 * 109.46706 * 184.99653 * 3 2 1 7 7 O 1.21282 * 120.00111 * 314.99744 * 6 3 2 8 8 N 1.34774 * 119.99791 * 135.00088 * 6 3 2 9 9 C 1.46494 * 120.00162 * 175.08362 * 8 6 3 10 10 C 1.53001 * 112.94434 * 303.25057 * 9 8 6 11 11 C 1.53001 * 109.47472 * 304.07118 * 10 9 8 12 12 O 1.42892 * 109.47275 * 175.18907 * 11 10 9 13 13 C 1.53947 * 113.74521 * 171.65849 * 9 8 6 14 14 N 1.47809 * 86.03878 * 222.08498 * 13 9 8 15 15 C 1.36937 * 134.45948 * 204.64319 * 14 13 9 16 16 H 1.07997 * 120.00695 * 184.80038 * 15 14 13 17 17 C 1.38819 * 119.99554 * 4.80375 * 15 14 13 18 18 N 1.31614 * 120.00006 * 5.09101 * 17 15 14 19 19 Si 1.86801 * 119.99826 * 185.08955 * 17 15 14 20 20 H 1.48501 * 109.47032 * 94.99691 * 19 17 15 21 21 H 1.48501 * 109.47142 * 214.99642 * 19 17 15 22 22 H 1.48509 * 109.47081 * 334.99925 * 19 17 15 23 23 C 1.47578 * 91.04931 * 24.54739 * 14 13 9 24 24 H 1.09002 * 109.47133 * 60.00657 * 1 2 3 25 25 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47406 * 300.00150 * 1 2 3 27 27 H 1.09004 * 109.46815 * 119.99765 * 2 1 3 28 28 H 1.08996 * 109.47406 * 239.99850 * 2 1 3 29 29 H 0.97002 * 120.00285 * 355.08640 * 8 6 3 30 30 H 1.09004 * 109.47397 * 64.07470 * 10 9 8 31 31 H 1.09005 * 109.47408 * 184.07062 * 10 9 8 32 32 H 1.08994 * 109.47118 * 295.19292 * 11 10 9 33 33 H 1.09000 * 109.46677 * 55.18654 * 11 10 9 34 34 H 0.96700 * 114.00073 * 180.02562 * 12 11 10 35 35 H 1.08995 * 113.76955 * 336.34994 * 13 9 8 36 36 H 1.08998 * 113.76704 * 107.74748 * 13 9 8 37 37 H 0.97001 * 119.99877 * 180.02562 * 18 17 15 38 38 H 1.09003 * 113.76953 * 221.15007 * 23 14 13 39 39 H 1.09002 * 113.77129 * 89.75554 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6698 2.0680 1.1954 6 6 3.5419 1.4443 -0.1238 7 8 4.2063 0.6811 0.5448 8 7 4.1467 2.2941 -0.9773 9 6 5.6089 2.3722 -1.0201 10 6 6.2283 2.7076 0.3381 11 6 5.6277 4.0126 0.8643 12 8 6.1218 4.2677 2.1806 13 6 6.1502 3.2312 -2.1773 14 7 7.1640 2.1704 -2.3547 15 6 8.4249 2.1281 -2.8872 16 1 8.9455 1.1854 -2.9685 17 6 9.0340 3.2972 -3.3223 18 7 8.4426 4.4575 -3.1322 19 14 10.6931 3.2234 -4.1777 20 1 10.4909 3.2004 -5.6487 21 1 11.4947 4.4171 -3.8068 22 1 11.4123 1.9939 -3.7576 23 6 6.2731 1.1761 -1.7258 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.6138 2.8540 -1.5633 30 1 6.0193 1.9017 1.0418 31 1 7.3066 2.8225 0.2273 32 1 5.9090 4.8338 0.2052 33 1 4.5415 3.9266 0.8943 34 1 5.7817 5.0812 2.5776 35 1 5.4600 3.3240 -3.0157 36 1 6.5645 4.1875 -1.8579 37 1 8.8681 5.2743 -3.4366 38 1 6.7854 0.4944 -1.0468 39 1 5.6190 0.6637 -2.4314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276075875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = -87.609838 kcal Electronic energy + Delta-G solvation = -22318.754530 eV Core-core repulsion = 18791.598057 eV Total energy + Delta-G solvation = -3527.156473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.91394 -40.03664 -37.90464 -36.34007 -34.08482 -33.75586 -31.97583 -30.37847 -27.92899 -26.89806 -25.10960 -23.53088 -22.40732 -21.48948 -20.34091 -18.79274 -17.66446 -17.12130 -16.84302 -16.62298 -15.76660 -15.36716 -14.85997 -14.76819 -14.34213 -14.17899 -13.95383 -13.69171 -13.48516 -13.03147 -12.59751 -12.40871 -12.19439 -11.82033 -11.76044 -11.59427 -11.28229 -11.10598 -11.03010 -10.92297 -10.78512 -10.69641 -10.18124 -10.02218 -9.68701 -9.61164 -9.18272 -8.92885 -8.68390 -6.96325 -5.83672 -3.17441 2.59502 3.14146 3.37051 3.42667 3.44353 4.33050 4.37996 4.47223 4.50609 4.64099 4.74721 5.11699 5.16197 5.20387 5.25413 5.44395 5.46560 5.57100 5.71221 5.75049 5.80421 5.90703 5.95257 6.00061 6.26665 6.41656 6.42090 6.57720 6.74861 6.81196 7.07096 7.25228 7.44843 7.66595 7.90942 7.94461 8.31799 8.96898 9.63659 10.49020 11.32513 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.004834 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.309161 B = 5790.811280 C = 6446.912259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.081 3.919 4 H 0.097 0.903 5 F -0.193 7.193 6 C 0.489 3.511 7 O -0.515 6.515 8 N -0.707 5.707 9 C 0.124 3.876 10 C -0.097 4.097 11 C 0.083 3.917 12 O -0.574 6.574 13 C 0.158 3.842 14 N -0.603 5.603 15 C -0.221 4.221 16 H 0.082 0.918 17 C -0.005 4.005 18 N -0.920 5.920 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.124 3.876 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.399 0.601 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.372 0.628 35 H 0.029 0.971 36 H 0.091 0.909 37 H 0.254 0.746 38 H 0.052 0.948 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 -2.289 4.743 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.041 3.959 4 H 0.114 0.886 5 F -0.173 7.173 6 C 0.271 3.729 7 O -0.390 6.390 8 N -0.359 5.359 9 C 0.038 3.962 10 C -0.135 4.135 11 C 0.005 3.995 12 O -0.378 6.378 13 C 0.032 3.968 14 N -0.329 5.329 15 C -0.349 4.349 16 H 0.100 0.900 17 C -0.202 4.202 18 N -0.567 5.567 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.003 4.003 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.233 0.767 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.217 0.783 35 H 0.046 0.954 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.324 -3.251 5.008 15.518 hybrid contribution 0.169 0.913 -0.853 1.261 sum -14.155 -2.338 4.155 14.937 Atomic orbital electron populations 1.21773 0.94424 1.02456 1.02355 1.21979 0.96949 0.93853 1.05114 1.21680 0.92959 0.95981 0.85282 0.88562 1.92866 1.92100 1.83944 1.48432 1.20879 0.89793 0.81349 0.80841 1.90714 1.65831 1.38452 1.43957 1.46328 1.08478 1.41221 1.39884 1.23051 0.76208 1.00589 0.96376 1.21335 1.01694 0.96296 0.94187 1.22110 0.96208 0.98070 0.83074 1.86490 1.73220 1.46705 1.31426 1.22720 0.88517 0.95303 0.90283 1.45619 1.11643 1.05257 1.70405 1.19009 0.88537 0.93868 1.33459 0.89996 1.24770 0.98788 0.95036 1.01603 1.69779 1.39052 0.96914 1.50925 0.86071 0.83105 0.77165 0.79266 1.21648 1.21608 1.20459 1.22866 0.91401 0.92701 0.93319 0.92415 0.91863 0.92043 0.89469 0.89737 0.76686 0.90332 0.89041 0.93242 0.94710 0.78254 0.95381 0.89120 0.93572 0.93007 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.83 37.16 0.37 -0.82 16 2 C -0.14 -1.41 5.41 -26.73 -0.14 -1.55 16 3 C 0.08 0.91 3.78 -27.88 -0.11 0.80 16 4 H 0.10 0.77 7.98 -51.93 -0.41 0.35 16 5 F -0.19 -2.54 16.75 2.25 0.04 -2.50 16 6 C 0.49 7.32 6.73 -10.99 -0.07 7.24 16 7 O -0.51 -9.69 14.79 5.56 0.08 -9.61 16 8 N -0.71 -10.37 4.52 -49.07 -0.22 -10.59 16 9 C 0.12 2.33 0.68 -134.03 -0.09 2.24 16 10 C -0.10 -1.92 4.67 -26.73 -0.12 -2.05 16 11 C 0.08 1.43 6.86 37.16 0.25 1.68 16 12 O -0.57 -9.70 13.66 -35.23 -0.48 -10.19 16 13 C 0.16 3.46 6.90 -2.84 -0.02 3.44 16 14 N -0.60 -15.10 3.54 -177.50 -0.63 -15.73 16 15 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 16 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 18 N -0.92 -26.25 11.29 55.49 0.63 -25.62 16 19 Si 0.91 21.84 29.56 -169.99 -5.02 16.82 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.12 2.64 8.04 -2.97 -0.02 2.61 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 27 H 0.09 1.00 8.05 -51.93 -0.42 0.59 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.40 4.59 8.55 -40.82 -0.35 4.24 16 30 H 0.08 1.66 6.54 -51.93 -0.34 1.32 16 31 H 0.09 2.09 8.02 -51.93 -0.42 1.68 16 32 H 0.05 0.85 7.61 -51.93 -0.40 0.46 16 33 H 0.03 0.55 7.43 -51.93 -0.39 0.16 16 34 H 0.37 4.26 9.12 45.56 0.42 4.67 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.21 6.29 -51.93 -0.33 1.88 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 38 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -33.10 326.99 -6.02 -39.13 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.12 Total: 6.29 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.22 Total: 7.09 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.22 Total: -51.95 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.40 Total: -19.80 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.10 -6.02 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276075875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.484 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds