Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46889 * 2 1 4 4 H 1.08996 * 109.47045 * 304.99413 * 3 2 1 5 5 F 1.39899 * 109.47085 * 65.00007 * 3 2 1 6 6 C 1.50701 * 109.46706 * 184.99653 * 3 2 1 7 7 O 1.21282 * 120.00111 * 314.99744 * 6 3 2 8 8 N 1.34774 * 119.99791 * 135.00088 * 6 3 2 9 9 C 1.46494 * 120.00162 * 175.08362 * 8 6 3 10 10 C 1.53001 * 112.94434 * 303.25057 * 9 8 6 11 11 C 1.53001 * 109.47472 * 304.07118 * 10 9 8 12 12 O 1.42892 * 109.47275 * 175.18907 * 11 10 9 13 13 C 1.53947 * 113.74521 * 171.65849 * 9 8 6 14 14 N 1.47809 * 86.03878 * 222.08498 * 13 9 8 15 15 C 1.36937 * 134.45948 * 204.64319 * 14 13 9 16 16 H 1.07997 * 120.00695 * 184.80038 * 15 14 13 17 17 C 1.38819 * 119.99554 * 4.80375 * 15 14 13 18 18 N 1.31614 * 120.00006 * 5.09101 * 17 15 14 19 19 Si 1.86801 * 119.99826 * 185.08955 * 17 15 14 20 20 H 1.48501 * 109.47032 * 94.99691 * 19 17 15 21 21 H 1.48501 * 109.47142 * 214.99642 * 19 17 15 22 22 H 1.48509 * 109.47081 * 334.99925 * 19 17 15 23 23 C 1.47578 * 91.04931 * 24.54739 * 14 13 9 24 24 H 1.09002 * 109.47133 * 60.00657 * 1 2 3 25 25 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47406 * 300.00150 * 1 2 3 27 27 H 1.09004 * 109.46815 * 119.99765 * 2 1 3 28 28 H 1.08996 * 109.47406 * 239.99850 * 2 1 3 29 29 H 0.97002 * 120.00285 * 355.08640 * 8 6 3 30 30 H 1.09004 * 109.47397 * 64.07470 * 10 9 8 31 31 H 1.09005 * 109.47408 * 184.07062 * 10 9 8 32 32 H 1.08994 * 109.47118 * 295.19292 * 11 10 9 33 33 H 1.09000 * 109.46677 * 55.18654 * 11 10 9 34 34 H 0.96700 * 114.00073 * 180.02562 * 12 11 10 35 35 H 1.08995 * 113.76955 * 336.34994 * 13 9 8 36 36 H 1.08998 * 113.76704 * 107.74748 * 13 9 8 37 37 H 0.97001 * 119.99877 * 180.02562 * 18 17 15 38 38 H 1.09003 * 113.76953 * 221.15007 * 23 14 13 39 39 H 1.09002 * 113.77129 * 89.75554 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6698 2.0680 1.1954 6 6 3.5419 1.4443 -0.1238 7 8 4.2063 0.6811 0.5448 8 7 4.1467 2.2941 -0.9773 9 6 5.6089 2.3722 -1.0201 10 6 6.2283 2.7076 0.3381 11 6 5.6277 4.0126 0.8643 12 8 6.1218 4.2677 2.1806 13 6 6.1502 3.2312 -2.1773 14 7 7.1640 2.1704 -2.3547 15 6 8.4249 2.1281 -2.8872 16 1 8.9455 1.1854 -2.9685 17 6 9.0340 3.2972 -3.3223 18 7 8.4426 4.4575 -3.1322 19 14 10.6931 3.2234 -4.1777 20 1 10.4909 3.2004 -5.6487 21 1 11.4947 4.4171 -3.8068 22 1 11.4123 1.9939 -3.7576 23 6 6.2731 1.1761 -1.7258 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.6138 2.8540 -1.5633 30 1 6.0193 1.9017 1.0418 31 1 7.3066 2.8225 0.2273 32 1 5.9090 4.8338 0.2052 33 1 4.5415 3.9266 0.8943 34 1 5.7817 5.0812 2.5776 35 1 5.4600 3.3240 -3.0157 36 1 6.5645 4.1875 -1.8579 37 1 8.8681 5.2743 -3.4366 38 1 6.7854 0.4944 -1.0468 39 1 5.6190 0.6637 -2.4314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276075875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = -113.040770 kcal Electronic energy + Delta-G solvation = -22319.857298 eV Core-core repulsion = 18791.598057 eV Total energy + Delta-G solvation = -3528.259241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.88399 -41.50579 -39.40623 -37.74170 -35.34746 -34.90628 -33.80041 -31.96858 -29.27647 -28.37446 -26.86542 -25.13503 -23.59511 -22.93354 -21.56197 -20.30922 -18.89774 -18.73372 -18.43852 -17.69820 -16.98662 -16.78887 -16.69170 -16.04766 -15.76618 -15.68944 -15.30300 -14.96270 -14.68306 -14.42388 -13.90999 -13.77241 -13.37672 -13.27506 -13.20282 -12.95549 -12.80376 -12.77327 -12.56402 -12.29867 -12.05678 -11.96999 -11.78364 -11.77663 -11.47245 -11.01527 -10.89811 -10.58924 -10.13775 -8.95618 -7.92778 -5.27537 1.38236 1.46523 1.47478 1.56507 1.91830 2.47305 3.10676 3.23261 3.31362 3.46837 3.59777 3.62657 3.74237 3.96336 4.08976 4.21778 4.30834 4.43476 4.45531 4.55583 4.67357 4.69329 4.79174 4.81924 4.95432 5.08602 5.11025 5.12612 5.19397 5.23053 5.38386 5.47585 5.64432 5.90510 6.47612 6.87291 6.89246 7.13544 7.56320 8.48837 9.22450 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.004834 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.309161 B = 5790.811280 C = 6446.912259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.087 3.913 4 H 0.142 0.858 5 F -0.202 7.202 6 C 0.487 3.513 7 O -0.556 6.556 8 N -0.695 5.695 9 C 0.153 3.847 10 C -0.091 4.091 11 C 0.093 3.907 12 O -0.592 6.592 13 C 0.163 3.837 14 N -0.631 5.631 15 C -0.239 4.239 16 H 0.079 0.921 17 C -0.055 4.055 18 N -0.944 5.944 19 Si 0.976 3.024 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.272 1.272 23 C 0.122 3.878 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.419 0.581 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.396 0.604 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.251 0.749 38 H 0.037 0.963 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.383 -2.111 4.208 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C 0.048 3.952 4 H 0.159 0.841 5 F -0.183 7.183 6 C 0.272 3.728 7 O -0.433 6.433 8 N -0.349 5.349 9 C 0.065 3.935 10 C -0.130 4.130 11 C 0.015 3.985 12 O -0.401 6.401 13 C 0.038 3.962 14 N -0.358 5.358 15 C -0.367 4.367 16 H 0.096 0.904 17 C -0.249 4.249 18 N -0.592 5.592 19 Si 0.805 3.195 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.197 1.197 23 C -0.004 4.004 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.257 0.743 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.312 -3.060 4.478 17.190 hybrid contribution 0.751 0.811 -0.625 1.270 sum -15.561 -2.249 3.853 16.188 Atomic orbital electron populations 1.21755 0.92373 1.03350 1.03026 1.22004 0.98620 0.92816 1.04460 1.21840 0.89674 0.97468 0.86219 0.84063 1.92853 1.91833 1.84182 1.49408 1.21635 0.91543 0.80083 0.79564 1.90710 1.67252 1.40018 1.45368 1.46060 1.06552 1.41717 1.40526 1.22291 0.78681 0.97873 0.94642 1.21192 0.99610 0.97591 0.94606 1.21942 0.96961 0.96279 0.83300 1.86432 1.73837 1.48626 1.31176 1.22619 0.88070 0.93946 0.91610 1.45880 1.11871 1.07361 1.70642 1.19300 0.90053 0.93946 1.33368 0.90369 1.25519 1.02076 0.94767 1.02550 1.69931 1.40288 0.97155 1.51798 0.85098 0.79249 0.77037 0.78154 1.21171 1.21876 1.19729 1.22969 0.91160 0.92926 0.93362 0.90556 0.90963 0.92512 0.91648 0.89035 0.74304 0.91728 0.92961 0.93318 0.92597 0.75388 0.94032 0.91641 0.93975 0.94481 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.83 71.98 0.71 -1.13 16 2 C -0.14 -2.49 5.41 30.60 0.17 -2.32 16 3 C 0.09 1.69 3.78 29.85 0.11 1.80 16 4 H 0.14 1.53 7.98 -2.39 -0.02 1.52 16 5 F -0.20 -4.79 16.75 44.97 0.75 -4.04 16 6 C 0.49 13.66 6.73 87.66 0.59 14.25 16 7 O -0.56 -20.69 14.79 -3.04 -0.04 -20.74 16 8 N -0.70 -18.94 4.52 -427.56 -1.93 -20.87 16 9 C 0.15 5.69 0.68 5.36 0.00 5.70 16 10 C -0.09 -3.69 4.67 30.59 0.14 -3.55 16 11 C 0.09 3.11 6.86 71.98 0.49 3.61 16 12 O -0.59 -19.50 13.66 -148.98 -2.03 -21.54 16 13 C 0.16 7.16 6.90 86.44 0.60 7.75 16 14 N -0.63 -32.06 3.54 -715.49 -2.53 -34.59 16 15 C -0.24 -13.39 10.70 84.04 0.90 -12.49 16 16 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 17 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 18 N -0.94 -54.54 11.29 21.65 0.24 -54.30 16 19 Si 0.98 45.25 29.56 68.60 2.03 47.28 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 C 0.12 5.23 8.04 86.48 0.70 5.92 16 24 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.77 7.93 -2.39 -0.02 0.75 16 27 H 0.06 1.44 8.05 -2.38 -0.02 1.43 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.42 8.23 8.55 -92.71 -0.79 7.44 16 30 H 0.06 2.79 6.54 -2.38 -0.02 2.77 16 31 H 0.05 2.50 8.02 -2.38 -0.02 2.48 16 32 H 0.05 1.65 7.61 -2.39 -0.02 1.63 16 33 H 0.06 1.64 7.43 -2.39 -0.02 1.62 16 34 H 0.40 8.39 9.12 -74.06 -0.68 7.72 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 3.23 6.29 -2.39 -0.02 3.22 16 37 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -72.88 326.99 0.95 -71.93 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.40 Total: 19.94 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 4.87 Total: 16.93 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.22 Total: -109.76 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -2.08 Total: -42.28 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.75 Total: -4.04 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.88 0.95 -71.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276075875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.114 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds