Wall clock time and date at job start Mon Mar 30 2020 01:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 C 1.53007 * 109.46949 * 119.99895 * 2 1 3 5 5 H 1.08992 * 109.47254 * 305.29192 * 4 2 1 6 6 F 1.39901 * 109.46871 * 185.28864 * 4 2 1 7 7 C 1.50698 * 109.46871 * 65.29234 * 4 2 1 8 8 O 1.21285 * 120.00274 * 65.95558 * 7 4 2 9 9 N 1.34781 * 119.99852 * 245.95049 * 7 4 2 10 10 C 1.46501 * 119.99866 * 180.02562 * 9 7 4 11 11 C 1.53001 * 109.46842 * 179.97438 * 10 9 7 12 12 O 1.42896 * 113.28428 * 313.07026 * 11 10 9 13 13 C 1.53504 * 114.20343 * 179.97438 * 11 10 9 14 14 N 1.47065 * 87.98371 * 220.34644 * 13 11 10 15 15 C 1.36937 * 136.05872 * 207.08147 * 14 13 11 16 16 H 1.08000 * 119.99773 * 5.67199 * 15 14 13 17 17 C 1.38813 * 119.99983 * 185.66755 * 15 14 13 18 18 N 1.31620 * 120.00247 * 5.85601 * 17 15 14 19 19 Si 1.86805 * 119.99625 * 185.58342 * 17 15 14 20 20 H 1.48493 * 109.47265 * 84.99681 * 19 17 15 21 21 H 1.48499 * 109.46805 * 204.99652 * 19 17 15 22 22 H 1.48505 * 109.47229 * 324.99212 * 19 17 15 23 23 C 1.47072 * 87.88870 * 27.34515 * 14 13 11 24 24 H 1.09004 * 109.46976 * 299.99731 * 1 2 3 25 25 H 1.09000 * 109.47334 * 60.00083 * 1 2 3 26 26 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47306 * 239.99612 * 2 1 3 28 28 H 1.08992 * 109.47185 * 305.01714 * 3 2 1 29 29 H 1.08996 * 109.46879 * 65.01889 * 3 2 1 30 30 H 1.08999 * 109.46669 * 185.01596 * 3 2 1 31 31 H 0.96998 * 120.00243 * 0.02562 * 9 7 4 32 32 H 1.09002 * 109.46937 * 60.00547 * 10 9 7 33 33 H 1.08994 * 109.47307 * 300.00242 * 10 9 7 34 34 H 0.96694 * 114.00532 * 46.92895 * 12 11 10 35 35 H 1.09003 * 113.46299 * 105.56779 * 13 11 10 36 36 H 1.08997 * 113.52078 * 335.13874 * 13 11 10 37 37 H 0.96996 * 119.99924 * 179.72284 * 18 17 15 38 38 H 1.08996 * 113.46555 * 87.43272 * 23 14 13 39 39 H 1.09001 * 113.46864 * 217.87920 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6013 -0.2651 2.1367 6 9 3.4337 -0.6169 1.3117 7 6 1.6475 -2.1748 1.1855 8 8 2.1204 -2.8938 0.3308 9 7 0.7709 -2.6760 2.0783 10 6 0.3898 -4.0892 2.0166 11 6 -0.6090 -4.3972 3.1340 12 8 -0.2121 -3.8788 4.4051 13 6 -1.0836 -5.8566 3.1693 14 7 -2.4331 -5.3561 3.4709 15 6 -3.5392 -5.8335 4.1219 16 1 -3.4935 -6.7790 4.6418 17 6 -4.7191 -5.1022 4.1135 18 7 -4.8107 -4.0091 3.3863 19 14 -6.1794 -5.6739 5.1286 20 1 -6.0436 -5.1699 6.5187 21 1 -7.4333 -5.1480 4.5316 22 1 -6.2222 -7.1583 5.1420 23 6 -2.0744 -4.1196 2.7599 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6052 1.9816 -0.8416 29 1 1.7519 1.9297 0.9315 30 1 3.1263 1.4437 -0.0899 31 1 0.3925 -2.1010 2.7617 32 1 1.2767 -4.7105 2.1412 33 1 -0.0688 -4.3000 1.0506 34 1 0.0860 -2.9593 4.3793 35 1 -0.6441 -6.4364 3.9810 36 1 -1.0128 -6.3604 2.2053 37 1 -5.6365 -3.5003 3.3773 38 1 -2.2646 -4.1647 1.6876 39 1 -2.4791 -3.2196 3.2229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278900291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:09 Heat of formation + Delta-G solvation = -80.950390 kcal Electronic energy + Delta-G solvation = -21876.944950 eV Core-core repulsion = 18350.077252 eV Total energy + Delta-G solvation = -3526.867698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.04199 -40.00987 -38.76674 -35.80620 -35.13063 -34.10522 -32.09348 -29.41684 -27.73694 -27.26574 -25.69933 -24.83242 -22.24679 -21.27013 -20.49330 -19.47802 -18.33296 -17.09038 -16.68694 -16.22147 -15.82754 -15.53564 -15.19542 -14.76488 -14.33115 -14.27640 -13.94621 -13.60319 -13.29402 -13.14536 -12.94595 -12.80839 -12.51181 -12.39847 -12.29667 -11.93100 -11.41079 -11.35923 -11.19222 -10.90773 -10.89652 -10.78333 -10.51062 -10.07447 -9.76880 -9.54969 -9.30077 -8.98447 -8.86095 -6.95980 -5.83876 -3.14293 2.32885 2.82552 3.37474 3.41900 3.43366 4.08759 4.24850 4.38902 4.39593 4.45832 4.52876 4.83254 4.92537 5.12295 5.15828 5.23074 5.25914 5.37935 5.53165 5.55345 5.58385 5.66989 5.78530 5.91947 5.95154 6.00739 6.17590 6.32703 6.44799 6.47888 6.93988 7.02505 7.22913 7.41889 7.89201 7.93498 8.06111 8.97687 9.64260 10.55193 11.35072 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.004023 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.233293 B = 6957.814937 C = 7509.823031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.147 4.147 4 C 0.086 3.914 5 H 0.100 0.900 6 F -0.189 7.189 7 C 0.494 3.506 8 O -0.522 6.522 9 N -0.716 5.716 10 C 0.106 3.894 11 C 0.055 3.945 12 O -0.521 6.521 13 C 0.133 3.867 14 N -0.599 5.599 15 C -0.215 4.215 16 H 0.083 0.917 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.144 3.856 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.399 0.601 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.359 0.641 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.254 0.746 38 H 0.037 0.963 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 10.293 -4.798 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.204 4.204 4 C 0.047 3.953 5 H 0.118 0.882 6 F -0.169 7.169 7 C 0.278 3.722 8 O -0.398 6.398 9 N -0.369 5.369 10 C -0.019 4.019 11 C 0.012 3.988 12 O -0.324 6.324 13 C 0.006 3.994 14 N -0.324 5.324 15 C -0.343 4.343 16 H 0.101 0.899 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.017 3.983 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.205 0.795 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.050 9.121 -5.087 15.945 hybrid contribution -0.855 0.526 0.577 1.158 sum 11.195 9.647 -4.510 15.451 Atomic orbital electron populations 1.21861 0.93052 1.03036 1.03089 1.21638 0.97497 0.97249 0.97007 1.21810 1.01770 0.94296 1.02528 1.21642 0.77745 0.93866 1.02077 0.88181 1.92869 1.29583 1.96728 1.97737 1.20876 0.79662 0.89859 0.81817 1.90740 1.53286 1.60344 1.35391 1.46001 1.45288 1.12322 1.33335 1.22015 0.99001 0.80445 1.00402 1.23512 0.93755 0.99227 0.82292 1.86656 1.86747 1.30310 1.28687 1.22384 0.87007 0.91287 0.98679 1.45343 1.10274 1.15080 1.61681 1.18915 0.87016 1.04214 1.24108 0.89948 1.24796 0.97503 0.97984 1.00041 1.69824 1.26753 1.17893 1.42435 0.86098 0.81759 0.77979 0.79672 1.21386 1.21626 1.20629 1.22697 0.86940 0.93192 0.95444 0.91752 0.91299 0.91869 0.89023 0.91656 0.92189 0.91882 0.76528 0.90772 0.89892 0.79455 0.92967 0.93280 0.93615 0.94499 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.01 37.16 0.33 -0.99 16 2 C -0.11 -1.05 2.72 -90.62 -0.25 -1.30 16 3 C -0.15 -1.09 8.95 37.16 0.33 -0.75 16 4 C 0.09 0.88 3.35 -27.88 -0.09 0.79 16 5 H 0.10 0.71 7.93 -51.93 -0.41 0.30 16 6 F -0.19 -2.31 16.44 2.25 0.04 -2.28 16 7 C 0.49 6.47 5.93 -10.98 -0.07 6.41 16 8 O -0.52 -8.93 17.01 5.55 0.09 -8.84 16 9 N -0.72 -8.58 5.34 -60.29 -0.32 -8.90 16 10 C 0.11 1.53 5.42 -4.04 -0.02 1.51 16 11 C 0.06 0.97 1.74 -89.96 -0.16 0.81 16 12 O -0.52 -9.08 13.56 -35.23 -0.48 -9.55 16 13 C 0.13 2.72 8.10 -8.49 -0.07 2.65 16 14 N -0.60 -15.27 3.77 -184.53 -0.70 -15.97 16 15 C -0.22 -6.06 10.74 -15.06 -0.16 -6.22 16 16 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -26.97 11.76 55.49 0.65 -26.32 16 19 Si 0.91 22.03 29.56 -169.99 -5.02 17.00 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.14 3.19 6.68 -8.35 -0.06 3.13 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.66 7.39 -51.93 -0.38 0.27 16 27 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.49 7.84 -51.93 -0.41 0.09 16 31 H 0.40 3.77 6.80 -40.82 -0.28 3.49 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 34 H 0.36 4.47 7.21 45.56 0.33 4.80 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.93 8.10 -51.93 -0.42 0.50 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.04 0.84 7.93 -51.93 -0.41 0.42 16 39 H 0.07 1.63 7.52 -51.93 -0.39 1.24 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -34.42 328.57 -6.37 -40.79 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.29 Total: 3.37 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.30 Total: 5.74 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.36 Total: -51.19 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.38 Total: -18.39 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.42 -6.37 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278900291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.163 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds