Wall clock time and date at job start Mon Mar 30 2020 01:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 C 1.53007 * 109.46949 * 119.99895 * 2 1 3 5 5 H 1.08992 * 109.47254 * 305.29192 * 4 2 1 6 6 F 1.39901 * 109.46871 * 185.28864 * 4 2 1 7 7 C 1.50698 * 109.46871 * 65.29234 * 4 2 1 8 8 O 1.21285 * 120.00274 * 65.95558 * 7 4 2 9 9 N 1.34781 * 119.99852 * 245.95049 * 7 4 2 10 10 C 1.46501 * 119.99866 * 180.02562 * 9 7 4 11 11 C 1.53001 * 109.46842 * 179.97438 * 10 9 7 12 12 O 1.42896 * 113.28428 * 313.07026 * 11 10 9 13 13 C 1.53504 * 114.20343 * 179.97438 * 11 10 9 14 14 N 1.47065 * 87.98371 * 220.34644 * 13 11 10 15 15 C 1.36937 * 136.05872 * 207.08147 * 14 13 11 16 16 H 1.08000 * 119.99773 * 5.67199 * 15 14 13 17 17 C 1.38813 * 119.99983 * 185.66755 * 15 14 13 18 18 N 1.31620 * 120.00247 * 5.85601 * 17 15 14 19 19 Si 1.86805 * 119.99625 * 185.58342 * 17 15 14 20 20 H 1.48493 * 109.47265 * 84.99681 * 19 17 15 21 21 H 1.48499 * 109.46805 * 204.99652 * 19 17 15 22 22 H 1.48505 * 109.47229 * 324.99212 * 19 17 15 23 23 C 1.47072 * 87.88870 * 27.34515 * 14 13 11 24 24 H 1.09004 * 109.46976 * 299.99731 * 1 2 3 25 25 H 1.09000 * 109.47334 * 60.00083 * 1 2 3 26 26 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47306 * 239.99612 * 2 1 3 28 28 H 1.08992 * 109.47185 * 305.01714 * 3 2 1 29 29 H 1.08996 * 109.46879 * 65.01889 * 3 2 1 30 30 H 1.08999 * 109.46669 * 185.01596 * 3 2 1 31 31 H 0.96998 * 120.00243 * 0.02562 * 9 7 4 32 32 H 1.09002 * 109.46937 * 60.00547 * 10 9 7 33 33 H 1.08994 * 109.47307 * 300.00242 * 10 9 7 34 34 H 0.96694 * 114.00532 * 46.92895 * 12 11 10 35 35 H 1.09003 * 113.46299 * 105.56779 * 13 11 10 36 36 H 1.08997 * 113.52078 * 335.13874 * 13 11 10 37 37 H 0.96996 * 119.99924 * 179.72284 * 18 17 15 38 38 H 1.08996 * 113.46555 * 87.43272 * 23 14 13 39 39 H 1.09001 * 113.46864 * 217.87920 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6013 -0.2651 2.1367 6 9 3.4337 -0.6169 1.3117 7 6 1.6475 -2.1748 1.1855 8 8 2.1204 -2.8938 0.3308 9 7 0.7709 -2.6760 2.0783 10 6 0.3898 -4.0892 2.0166 11 6 -0.6090 -4.3972 3.1340 12 8 -0.2121 -3.8788 4.4051 13 6 -1.0836 -5.8566 3.1693 14 7 -2.4331 -5.3561 3.4709 15 6 -3.5392 -5.8335 4.1219 16 1 -3.4935 -6.7790 4.6418 17 6 -4.7191 -5.1022 4.1135 18 7 -4.8107 -4.0091 3.3863 19 14 -6.1794 -5.6739 5.1286 20 1 -6.0436 -5.1699 6.5187 21 1 -7.4333 -5.1480 4.5316 22 1 -6.2222 -7.1583 5.1420 23 6 -2.0744 -4.1196 2.7599 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6052 1.9816 -0.8416 29 1 1.7519 1.9297 0.9315 30 1 3.1263 1.4437 -0.0899 31 1 0.3925 -2.1010 2.7617 32 1 1.2767 -4.7105 2.1412 33 1 -0.0688 -4.3000 1.0506 34 1 0.0860 -2.9593 4.3793 35 1 -0.6441 -6.4364 3.9810 36 1 -1.0128 -6.3604 2.2053 37 1 -5.6365 -3.5003 3.3773 38 1 -2.2646 -4.1647 1.6876 39 1 -2.4791 -3.2196 3.2229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278900291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:09 Heat of formation + Delta-G solvation = -107.633951 kcal Electronic energy + Delta-G solvation = -21878.102037 eV Core-core repulsion = 18350.077252 eV Total energy + Delta-G solvation = -3528.024784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.93318 -41.27866 -40.18607 -36.67398 -36.54605 -35.35505 -34.09440 -30.76936 -29.08339 -27.96257 -27.15041 -26.53549 -23.92151 -22.29279 -21.40624 -21.01793 -19.43021 -18.73613 -17.98247 -17.27794 -17.14150 -16.77519 -16.53478 -16.01468 -15.76226 -15.63254 -15.18799 -15.04546 -14.67040 -14.39738 -14.01151 -13.90885 -13.66531 -13.48297 -13.34718 -13.05753 -13.01519 -12.80101 -12.54490 -12.25800 -12.13257 -12.03956 -11.81016 -11.62406 -11.40952 -10.96579 -10.85832 -10.71321 -10.27545 -8.96377 -7.95062 -5.26222 1.29038 1.45630 1.48165 1.55643 1.79599 2.45607 3.01106 3.26229 3.28728 3.31839 3.40332 3.57753 3.68515 3.78838 3.87523 4.17020 4.33551 4.44636 4.52461 4.65828 4.71818 4.76006 4.78881 4.89264 4.91007 4.97404 5.12722 5.13815 5.15490 5.26510 5.33443 5.36690 5.44737 5.88122 6.24008 6.78701 6.88577 6.97177 7.56170 8.55252 9.23649 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.004023 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.233293 B = 6957.814937 C = 7509.823031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.143 4.143 4 C 0.087 3.913 5 H 0.140 0.860 6 F -0.200 7.200 7 C 0.494 3.506 8 O -0.566 6.566 9 N -0.705 5.705 10 C 0.120 3.880 11 C 0.094 3.906 12 O -0.535 6.535 13 C 0.125 3.875 14 N -0.634 5.634 15 C -0.232 4.232 16 H 0.083 0.917 17 C -0.062 4.062 18 N -0.952 5.952 19 Si 0.980 3.020 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.143 3.857 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.414 0.586 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.383 0.617 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.250 0.750 38 H 0.029 0.971 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.787 11.197 -4.111 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.048 3.952 5 H 0.158 0.842 6 F -0.180 7.180 7 C 0.280 3.720 8 O -0.445 6.445 9 N -0.359 5.359 10 C -0.005 4.005 11 C 0.051 3.949 12 O -0.342 6.342 13 C 0.000 4.000 14 N -0.360 5.360 15 C -0.360 4.360 16 H 0.100 0.900 17 C -0.256 4.256 18 N -0.600 5.600 19 Si 0.808 3.192 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.195 1.195 23 C 0.017 3.983 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.252 0.748 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.232 0.768 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.644 10.045 -4.379 16.732 hybrid contribution -0.981 0.233 0.355 1.069 sum 11.663 10.279 -4.024 16.058 Atomic orbital electron populations 1.21857 0.92570 1.01997 1.04409 1.21621 0.97781 0.98114 0.95651 1.21798 1.01371 0.92991 1.03860 1.21869 0.77194 0.91806 1.04338 0.84205 1.92849 1.30707 1.96593 1.97877 1.21434 0.78829 0.90920 0.80841 1.90723 1.54894 1.61735 1.37099 1.45854 1.44978 1.11494 1.33566 1.21695 0.98160 0.82105 0.98558 1.22872 0.91902 0.96936 0.83155 1.86608 1.86599 1.32409 1.28544 1.22619 0.84730 0.93209 0.99491 1.45703 1.11212 1.16986 1.62074 1.19285 0.88267 1.04261 1.24173 0.89967 1.25608 1.00117 0.98362 1.01468 1.69985 1.27075 1.18995 1.43946 0.85082 0.78218 0.77977 0.77958 1.21078 1.21836 1.19516 1.22692 0.90015 0.91185 0.94398 0.89989 0.90534 0.93994 0.91161 0.90652 0.90607 0.92485 0.74809 0.90006 0.90414 0.76772 0.92769 0.91368 0.94115 0.95293 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.01 71.98 0.65 -1.71 16 2 C -0.11 -1.89 2.72 -10.79 -0.03 -1.91 16 3 C -0.14 -1.78 8.95 71.98 0.64 -1.14 16 4 C 0.09 1.58 3.35 29.85 0.10 1.68 16 5 H 0.14 1.44 7.93 -2.39 -0.02 1.42 16 6 F -0.20 -4.55 16.44 44.97 0.74 -3.81 16 7 C 0.49 12.25 5.93 87.66 0.52 12.77 16 8 O -0.57 -19.11 17.01 -3.04 -0.05 -19.16 16 9 N -0.70 -15.52 5.34 -463.05 -2.47 -17.99 16 10 C 0.12 3.29 5.42 86.38 0.47 3.76 16 11 C 0.09 3.21 1.74 -10.37 -0.02 3.19 16 12 O -0.53 -17.60 13.56 -148.98 -2.02 -19.62 16 13 C 0.13 5.00 8.10 83.19 0.67 5.67 16 14 N -0.63 -32.46 3.77 -738.21 -2.78 -35.25 16 15 C -0.23 -13.14 10.74 84.03 0.90 -12.23 16 16 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 17 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 18 N -0.95 -56.46 11.76 21.65 0.25 -56.21 16 19 Si 0.98 45.46 29.56 68.60 2.03 47.49 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.14 6.38 6.68 83.28 0.56 6.94 16 24 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.04 0.83 7.39 -2.39 -0.02 0.81 16 27 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.79 7.84 -2.39 -0.02 0.77 16 31 H 0.41 6.70 6.80 -92.71 -0.63 6.07 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.28 7.89 -2.39 -0.02 2.26 16 34 H 0.38 8.48 7.21 -74.06 -0.53 7.95 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 37 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.03 1.33 7.93 -2.39 -0.02 1.32 16 39 H 0.04 1.98 7.52 -2.39 -0.02 1.96 16 Total: -1.00 -75.04 328.57 0.52 -74.52 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.10 Total: 16.09 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 4.93 Total: 13.95 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -5.00 Total: -109.44 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -2.07 Total: -38.79 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.74 Total: -3.81 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.04 0.52 -74.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278900291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.118 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds