Wall clock time and date at job start Mon Mar 30 2020 01:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46852 * 2 1 4 4 F 1.39901 * 109.47189 * 240.00539 * 2 1 3 5 5 C 1.50700 * 109.47331 * 120.00153 * 2 1 3 6 6 O 1.21279 * 119.99946 * 359.97438 * 5 2 1 7 7 N 1.34782 * 119.99811 * 180.02562 * 5 2 1 8 8 C 1.46502 * 119.99328 * 179.97438 * 7 5 2 9 9 C 1.53004 * 109.46664 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.67800 * 295.39341 * 9 8 7 11 11 C 1.53291 * 109.68002 * 174.87806 * 9 8 7 12 12 O 1.42963 * 109.26366 * 187.94675 * 11 9 8 13 13 C 1.43055 * 114.10800 * 62.55089 * 12 11 9 14 14 C 1.53299 * 109.25477 * 297.45878 * 13 12 11 15 15 N 1.47150 * 109.68206 * 55.94843 * 9 8 7 16 16 C 1.36937 * 120.98255 * 350.24248 * 15 9 8 17 17 H 1.07998 * 120.00202 * 43.29036 * 16 15 9 18 18 C 1.38818 * 119.99774 * 223.29898 * 16 15 9 19 19 N 1.31621 * 119.99675 * 211.25771 * 18 16 15 20 20 Si 1.86797 * 120.00093 * 31.25634 * 18 16 15 21 21 H 1.48499 * 109.47372 * 84.91108 * 20 18 16 22 22 H 1.48502 * 109.46912 * 204.90883 * 20 18 16 23 23 H 1.48504 * 109.47128 * 324.90642 * 20 18 16 24 24 H 1.08998 * 109.47528 * 299.99648 * 1 2 3 25 25 H 1.08997 * 109.47194 * 59.99951 * 1 2 3 26 26 H 1.09002 * 109.46763 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47091 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47261 * 300.00008 * 3 2 1 29 29 H 1.08998 * 109.46766 * 59.99886 * 3 2 1 30 30 H 0.97000 * 119.99804 * 0.02562 * 7 5 2 31 31 H 1.09002 * 109.47109 * 60.00348 * 8 7 5 32 32 H 1.08999 * 109.47237 * 299.99705 * 8 7 5 33 33 H 1.08997 * 109.51471 * 307.89959 * 11 9 8 34 34 H 1.09000 * 109.51389 * 67.99805 * 11 9 8 35 35 H 1.08996 * 109.49704 * 177.52363 * 13 12 11 36 36 H 1.08998 * 109.50441 * 57.38977 * 13 12 11 37 37 H 1.09002 * 109.68015 * 292.58145 * 14 13 12 38 38 H 1.08992 * 109.68554 * 172.02848 * 14 13 12 39 39 H 0.97004 * 119.99581 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1710 2.0290 7 7 3.3575 -0.8331 1.4439 8 6 3.8458 -1.5233 2.6404 9 6 5.3758 -1.5233 2.6403 10 1 5.7428 -2.1066 1.7957 11 6 5.8921 -2.1300 3.9499 12 8 7.3095 -1.9583 4.0228 13 6 7.7319 -0.5918 4.0499 14 6 7.3098 0.0938 2.7453 15 7 5.8715 -0.1413 2.5418 16 6 5.0195 0.8953 2.2685 17 1 4.0595 0.9493 2.7602 18 6 5.3899 1.8768 1.3593 19 7 4.9576 3.1108 1.5106 20 14 6.5017 1.4463 -0.0786 21 1 5.6813 0.9173 -1.1977 22 1 7.2245 2.6636 -0.5272 23 1 7.4833 0.4159 0.3458 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 3.9878 -0.4637 0.8057 31 1 3.4828 -2.5510 2.6405 32 1 3.4822 -1.0093 3.5301 33 1 5.4206 -1.6278 4.7946 34 1 5.6523 -3.1929 3.9782 35 1 8.8164 -0.5481 4.1497 36 1 7.2671 -0.0839 4.8949 37 1 7.8720 -0.3262 1.9113 38 1 7.5005 1.1646 2.8149 39 1 5.2167 3.7967 0.8755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280397610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:21 Heat of formation + Delta-G solvation = -101.621765 kcal Electronic energy + Delta-G solvation = -23345.567198 eV Core-core repulsion = 19817.803122 eV Total energy + Delta-G solvation = -3527.764076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.52609 -39.40864 -38.47808 -35.54697 -33.58713 -33.27569 -31.85833 -30.95122 -27.65724 -27.06934 -25.78425 -23.43034 -22.97413 -21.81474 -20.00437 -19.36048 -17.57084 -16.62979 -16.11923 -15.92377 -15.48677 -15.31018 -14.92547 -14.52880 -14.40343 -14.20325 -13.90077 -13.54854 -13.22082 -12.73866 -12.67875 -12.27048 -12.09162 -12.05591 -11.85919 -11.69146 -11.64786 -11.54524 -10.98714 -10.85312 -10.79062 -10.54380 -10.36964 -9.97309 -9.71200 -9.44088 -9.13902 -8.59812 -8.32864 -6.86030 -6.28303 -3.67679 3.00207 3.20944 3.34045 3.39628 3.60359 4.30064 4.35048 4.63154 4.79742 4.86017 5.03105 5.05676 5.21457 5.43433 5.55495 5.67499 5.77814 5.82424 5.90367 5.92941 5.94160 6.00270 6.05202 6.11717 6.21362 6.26122 6.37612 6.43865 6.61011 6.67610 6.76573 7.03762 7.61214 7.77852 8.12550 8.20612 8.69621 8.72946 9.44317 9.94686 10.84095 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.008552 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.178436 B = 3273.398311 C = 4260.094496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 C -0.170 4.170 4 F -0.202 7.202 5 C 0.496 3.504 6 O -0.552 6.552 7 N -0.677 5.677 8 C 0.137 3.863 9 C 0.119 3.881 10 H 0.044 0.956 11 C 0.057 3.943 12 O -0.389 6.389 13 C 0.043 3.957 14 C 0.108 3.892 15 N -0.601 5.601 16 C -0.281 4.281 17 H 0.082 0.918 18 C 0.056 3.944 19 N -0.869 5.869 20 Si 0.826 3.174 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.254 1.254 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.415 0.585 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -5.355 -0.819 5.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.080 3.920 3 C -0.228 4.228 4 F -0.183 7.183 5 C 0.280 3.720 6 O -0.431 6.431 7 N -0.329 5.329 8 C 0.012 3.988 9 C 0.012 3.988 10 H 0.062 0.938 11 C -0.022 4.022 12 O -0.308 6.308 13 C -0.035 4.035 14 C -0.017 4.017 15 N -0.327 5.327 16 C -0.409 4.409 17 H 0.099 0.901 18 C -0.148 4.148 19 N -0.506 5.506 20 Si 0.652 3.348 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.179 1.179 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.255 0.745 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.924 -5.645 -0.328 5.973 hybrid contribution 0.888 0.425 -1.357 1.676 sum -1.036 -5.220 -1.685 5.582 Atomic orbital electron populations 1.22110 0.91653 1.03852 1.03411 1.21230 0.96172 0.93735 0.80828 1.22393 1.04656 0.91998 1.03705 1.92871 1.90415 1.82864 1.52123 1.20623 0.83295 0.80425 0.87700 1.90639 1.55679 1.49406 1.47419 1.46107 1.06340 1.55511 1.24915 1.21151 0.93074 0.95772 0.88768 1.21588 0.92255 0.88581 0.96332 0.93792 1.22865 0.81919 1.00128 0.97289 1.87845 1.21918 1.26092 1.94937 1.23141 0.98736 0.82600 0.98989 1.22042 0.85601 0.99738 0.94358 1.44352 1.03792 1.01424 1.83175 1.18683 1.01715 0.99922 1.20575 0.90080 1.25596 0.96484 0.95175 0.97576 1.70020 1.45385 1.00006 1.35238 0.87706 0.82532 0.78803 0.85780 1.20671 1.21908 1.17881 0.90061 0.91250 0.91153 0.89270 0.91328 0.89863 0.74466 0.92047 0.91192 0.93020 0.89543 0.89937 0.93241 0.94592 0.90595 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.22 37.16 0.31 -1.93 16 2 C 0.10 1.78 1.54 -91.77 -0.14 1.64 16 3 C -0.17 -3.01 8.83 37.16 0.33 -2.68 16 4 F -0.20 -3.67 16.79 2.25 0.04 -3.63 16 5 C 0.50 9.81 6.87 -10.98 -0.08 9.74 16 6 O -0.55 -11.83 15.98 5.56 0.09 -11.74 16 7 N -0.68 -13.38 3.70 -60.29 -0.22 -13.60 16 8 C 0.14 2.50 4.53 -4.04 -0.02 2.48 16 9 C 0.12 2.18 3.27 -67.42 -0.22 1.96 16 10 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 11 C 0.06 0.93 6.28 37.31 0.23 1.16 16 12 O -0.39 -6.91 10.75 -35.23 -0.38 -7.29 16 13 C 0.04 0.74 6.98 37.31 0.26 1.00 16 14 C 0.11 2.15 4.78 -3.53 -0.02 2.13 16 15 N -0.60 -12.71 2.46 -164.30 -0.40 -13.11 16 16 C -0.28 -6.68 6.38 -15.06 -0.10 -6.77 16 17 H 0.08 2.14 6.71 -52.49 -0.35 1.79 16 18 C 0.06 1.38 3.97 -17.43 -0.07 1.31 16 19 N -0.87 -22.83 13.97 55.49 0.78 -22.06 16 20 Si 0.83 18.93 27.32 -169.99 -4.64 14.28 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.25 -5.68 4.95 56.52 0.28 -5.40 16 24 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 27 H 0.09 1.83 6.54 -51.93 -0.34 1.49 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.42 8.67 6.18 -40.82 -0.25 8.42 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.37 7.80 -51.93 -0.40 0.97 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.74 6.39 -51.93 -0.33 0.41 16 38 H 0.08 1.59 7.29 -51.93 -0.38 1.21 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -27.37 310.49 -5.54 -32.91 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.96 Total: 9.53 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 0.49 Total: 10.04 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.15 Total: -48.77 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.29 Total: -19.03 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.04 Total: -3.63 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.64 Total: 14.28 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.37 -5.54 -32.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280397610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.713 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds