Wall clock time and date at job start Mon Mar 30 2020 01:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46852 * 2 1 4 4 F 1.39901 * 109.47189 * 240.00539 * 2 1 3 5 5 C 1.50700 * 109.47331 * 120.00153 * 2 1 3 6 6 O 1.21279 * 119.99946 * 359.97438 * 5 2 1 7 7 N 1.34782 * 119.99811 * 180.02562 * 5 2 1 8 8 C 1.46502 * 119.99328 * 179.97438 * 7 5 2 9 9 C 1.53004 * 109.46664 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.67800 * 295.39341 * 9 8 7 11 11 C 1.53291 * 109.68002 * 174.87806 * 9 8 7 12 12 O 1.42963 * 109.26366 * 187.94675 * 11 9 8 13 13 C 1.43055 * 114.10800 * 62.55089 * 12 11 9 14 14 C 1.53299 * 109.25477 * 297.45878 * 13 12 11 15 15 N 1.47150 * 109.68206 * 55.94843 * 9 8 7 16 16 C 1.36937 * 120.98255 * 350.24248 * 15 9 8 17 17 H 1.07998 * 120.00202 * 43.29036 * 16 15 9 18 18 C 1.38818 * 119.99774 * 223.29898 * 16 15 9 19 19 N 1.31621 * 119.99675 * 211.25771 * 18 16 15 20 20 Si 1.86797 * 120.00093 * 31.25634 * 18 16 15 21 21 H 1.48499 * 109.47372 * 84.91108 * 20 18 16 22 22 H 1.48502 * 109.46912 * 204.90883 * 20 18 16 23 23 H 1.48504 * 109.47128 * 324.90642 * 20 18 16 24 24 H 1.08998 * 109.47528 * 299.99648 * 1 2 3 25 25 H 1.08997 * 109.47194 * 59.99951 * 1 2 3 26 26 H 1.09002 * 109.46763 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47091 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47261 * 300.00008 * 3 2 1 29 29 H 1.08998 * 109.46766 * 59.99886 * 3 2 1 30 30 H 0.97000 * 119.99804 * 0.02562 * 7 5 2 31 31 H 1.09002 * 109.47109 * 60.00348 * 8 7 5 32 32 H 1.08999 * 109.47237 * 299.99705 * 8 7 5 33 33 H 1.08997 * 109.51471 * 307.89959 * 11 9 8 34 34 H 1.09000 * 109.51389 * 67.99805 * 11 9 8 35 35 H 1.08996 * 109.49704 * 177.52363 * 13 12 11 36 36 H 1.08998 * 109.50441 * 57.38977 * 13 12 11 37 37 H 1.09002 * 109.68015 * 292.58145 * 14 13 12 38 38 H 1.08992 * 109.68554 * 172.02848 * 14 13 12 39 39 H 0.97004 * 119.99581 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1710 2.0290 7 7 3.3575 -0.8331 1.4439 8 6 3.8458 -1.5233 2.6404 9 6 5.3758 -1.5233 2.6403 10 1 5.7428 -2.1066 1.7957 11 6 5.8921 -2.1300 3.9499 12 8 7.3095 -1.9583 4.0228 13 6 7.7319 -0.5918 4.0499 14 6 7.3098 0.0938 2.7453 15 7 5.8715 -0.1413 2.5418 16 6 5.0195 0.8953 2.2685 17 1 4.0595 0.9493 2.7602 18 6 5.3899 1.8768 1.3593 19 7 4.9576 3.1108 1.5106 20 14 6.5017 1.4463 -0.0786 21 1 5.6813 0.9173 -1.1977 22 1 7.2245 2.6636 -0.5272 23 1 7.4833 0.4159 0.3458 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 3.9878 -0.4637 0.8057 31 1 3.4828 -2.5510 2.6405 32 1 3.4822 -1.0093 3.5301 33 1 5.4206 -1.6278 4.7946 34 1 5.6523 -3.1929 3.9782 35 1 8.8164 -0.5481 4.1497 36 1 7.2671 -0.0839 4.8949 37 1 7.8720 -0.3262 1.9113 38 1 7.5005 1.1646 2.8149 39 1 5.2167 3.7967 0.8755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280397610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:21 Heat of formation + Delta-G solvation = -119.656825 kcal Electronic energy + Delta-G solvation = -23346.349257 eV Core-core repulsion = 19817.803122 eV Total energy + Delta-G solvation = -3528.546135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.95694 -40.96042 -39.97266 -37.09417 -35.24713 -34.70496 -33.61453 -32.45585 -29.27934 -28.38946 -27.27413 -25.09894 -24.45299 -23.29346 -21.60029 -20.88581 -19.15854 -18.29702 -17.64469 -17.46542 -16.95709 -16.74914 -16.53494 -15.99303 -15.95918 -15.74210 -15.41924 -15.10441 -14.80541 -14.52257 -14.10290 -13.88782 -13.62651 -13.35638 -13.26803 -13.08204 -13.03162 -12.99617 -12.71700 -12.56241 -12.27249 -12.08390 -11.93467 -11.60874 -11.32333 -10.97866 -10.72280 -10.38809 -9.95468 -8.59291 -8.21876 -5.57490 1.34241 1.43593 1.47888 1.51627 2.12093 2.45158 2.86819 3.02238 3.26871 3.39715 3.46248 3.66448 3.83264 3.95384 4.15841 4.24692 4.39089 4.46153 4.56239 4.57642 4.58967 4.65172 4.70372 4.72325 4.82684 4.97259 4.97919 5.05792 5.09640 5.21531 5.24730 5.48680 5.91218 6.23622 6.29357 6.52303 6.91649 7.11595 7.57729 8.10919 8.94267 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.008552 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.178436 B = 3273.398311 C = 4260.094496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.102 3.898 3 C -0.163 4.163 4 F -0.205 7.205 5 C 0.489 3.511 6 O -0.571 6.571 7 N -0.682 5.682 8 C 0.138 3.862 9 C 0.119 3.881 10 H 0.049 0.951 11 C 0.060 3.940 12 O -0.393 6.393 13 C 0.051 3.949 14 C 0.105 3.895 15 N -0.613 5.613 16 C -0.257 4.257 17 H 0.051 0.949 18 C 0.028 3.972 19 N -0.907 5.907 20 Si 0.869 3.131 21 H -0.284 1.284 22 H -0.305 1.305 23 H -0.243 1.243 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.410 0.590 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.034 0.966 38 H 0.060 0.940 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -6.795 -0.999 6.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.081 3.919 3 C -0.221 4.221 4 F -0.185 7.185 5 C 0.274 3.726 6 O -0.452 6.452 7 N -0.332 5.332 8 C 0.014 3.986 9 C 0.013 3.987 10 H 0.066 0.934 11 C -0.018 4.018 12 O -0.312 6.312 13 C -0.027 4.027 14 C -0.020 4.020 15 N -0.340 5.340 16 C -0.386 4.386 17 H 0.068 0.932 18 C -0.173 4.173 19 N -0.547 5.547 20 Si 0.696 3.304 21 H -0.211 1.211 22 H -0.232 1.232 23 H -0.167 1.167 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.248 0.752 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.615 -7.124 -0.498 7.322 hybrid contribution 0.786 0.839 -1.247 1.696 sum -0.830 -6.285 -1.745 6.575 Atomic orbital electron populations 1.22120 0.89127 1.04404 1.04852 1.21310 0.97985 0.92909 0.79669 1.22306 1.02643 0.92517 1.04588 1.92864 1.90667 1.82913 1.52102 1.21081 0.83080 0.80150 0.88317 1.90618 1.55985 1.50316 1.48314 1.46182 1.06445 1.55463 1.25074 1.21206 0.93168 0.96561 0.87625 1.21721 0.92146 0.86989 0.97815 0.93352 1.22946 0.81261 1.01966 0.95656 1.87855 1.22497 1.26075 1.94735 1.23095 1.00516 0.82140 0.96909 1.22060 0.84718 0.99269 0.95977 1.44491 1.04127 1.02161 1.83247 1.18376 1.00758 1.00235 1.19187 0.93190 1.25827 0.97662 0.94949 0.98896 1.70088 1.47661 1.00831 1.36150 0.87024 0.81409 0.78138 0.83826 1.21052 1.23237 1.16745 0.90046 0.88416 0.91048 0.92232 0.88740 0.90664 0.75169 0.89791 0.92909 0.93212 0.86182 0.86947 0.93493 0.94800 0.92128 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.22 71.98 0.59 -3.46 16 2 C 0.10 3.50 1.54 -11.54 -0.02 3.48 16 3 C -0.16 -5.72 8.83 71.98 0.64 -5.08 16 4 F -0.20 -7.17 16.79 44.97 0.76 -6.42 16 5 C 0.49 19.19 6.87 87.66 0.60 19.79 16 6 O -0.57 -24.24 15.98 -3.03 -0.05 -24.29 16 7 N -0.68 -26.76 3.70 -463.04 -1.71 -28.48 16 8 C 0.14 4.93 4.53 86.38 0.39 5.32 16 9 C 0.12 4.17 3.27 44.97 0.15 4.32 16 10 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 11 C 0.06 1.80 6.28 72.08 0.45 2.25 16 12 O -0.39 -12.74 10.75 -148.98 -1.60 -14.34 16 13 C 0.05 1.63 6.98 72.08 0.50 2.13 16 14 C 0.10 4.02 4.78 86.36 0.41 4.43 16 15 N -0.61 -25.45 2.46 -673.72 -1.66 -27.11 16 16 C -0.26 -12.29 6.38 84.03 0.54 -11.76 16 17 H 0.05 2.72 6.71 -2.91 -0.02 2.70 16 18 C 0.03 1.39 3.97 84.86 0.34 1.73 16 19 N -0.91 -48.73 13.97 21.65 0.30 -48.43 16 20 Si 0.87 39.23 27.32 68.60 1.87 41.11 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 23 H -0.24 -10.43 4.95 99.48 0.49 -9.94 16 24 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 25 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 27 H 0.06 2.46 6.54 -2.39 -0.02 2.44 16 28 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.41 17.09 6.18 -92.71 -0.57 16.51 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.05 2.07 7.80 -2.39 -0.02 2.05 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.03 1.33 6.39 -2.39 -0.02 1.31 16 38 H 0.06 2.50 7.29 -2.39 -0.02 2.48 16 39 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -58.18 310.49 2.76 -55.42 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.26 Total: 29.39 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 4.59 Total: 23.15 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -3.07 Total: -104.01 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.65 Total: -38.63 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.76 Total: -6.42 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.87 Total: 41.11 kcal Total: -58.18 2.76 -55.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280397610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.237 kcal (2) G-P(sol) polarization free energy of solvation -58.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds