Wall clock time and date at job start Mon Mar 30 2020 01:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.42899 * 113.99629 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.64771 * 31.69742 * 5 4 3 7 7 C 1.54596 * 110.72517 * 268.54494 * 5 4 3 8 8 C 1.53997 * 105.14111 * 219.68456 * 7 5 4 9 9 N 1.47895 * 107.05651 * 358.78046 * 8 7 5 10 10 C 1.38820 * 110.99992 * 145.84785 * 9 8 7 11 11 C 1.39804 * 119.58215 * 300.11835 * 10 9 8 12 12 C 1.38590 * 119.49282 * 180.02562 * 11 10 9 13 13 C 1.38393 * 118.67995 * 359.97438 * 12 11 10 14 14 C 1.40547 * 119.14898 * 0.02562 * 13 12 11 15 15 C 1.41322 * 119.78336 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99675 * 0.02562 * 15 14 13 17 17 C 1.40030 * 120.00007 * 179.97438 * 15 14 13 18 18 N 1.30746 * 119.99679 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99722 * 180.02562 * 17 15 14 20 20 H 1.48489 * 109.47409 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47125 * 120.00529 * 19 17 15 22 22 H 1.48504 * 109.46901 * 240.00004 * 19 17 15 23 23 N 1.31957 * 119.58997 * 119.84901 * 10 9 8 24 24 C 1.48523 * 105.82497 * 25.32384 * 9 8 7 25 25 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 29 29 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 30 30 H 1.09001 * 110.31020 * 338.60579 * 7 5 4 31 31 H 1.09007 * 110.30938 * 100.77170 * 7 5 4 32 32 H 1.09008 * 109.91276 * 118.13074 * 8 7 5 33 33 H 1.09004 * 109.91595 * 239.41975 * 8 7 5 34 34 H 1.07997 * 120.25083 * 359.97438 * 11 10 9 35 35 H 1.07998 * 120.66195 * 180.02562 * 12 11 10 36 36 H 1.08001 * 120.42423 * 179.97438 * 13 12 11 37 37 H 0.97001 * 119.99608 * 180.02562 * 18 17 15 38 38 H 1.08998 * 110.67245 * 202.36160 * 24 9 8 39 39 H 1.08998 * 110.66434 * 79.22935 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 1 3.2949 3.3108 0.8204 7 6 5.1135 2.3649 0.0665 8 6 6.2857 2.9973 0.8396 9 7 5.7580 3.4259 2.1531 10 6 6.7186 3.2846 3.1452 11 6 7.2562 2.0217 3.4106 12 6 8.2147 1.8827 4.4019 13 6 8.6130 3.0074 5.1030 14 6 8.0352 4.2497 4.7897 15 6 8.4316 5.4068 5.4976 16 1 9.1765 5.3347 6.2762 17 6 7.8592 6.6469 5.1888 18 7 6.9577 6.7342 4.2458 19 14 8.3837 8.1764 6.1241 20 1 9.4099 7.8119 7.1335 21 1 8.9524 9.1666 5.1746 22 1 7.2052 8.7669 6.8080 23 7 7.1167 4.3449 3.8225 24 6 4.5839 2.5566 2.4211 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 2.4755 1.4868 -0.9927 29 1 1.3855 2.1161 0.2660 30 1 5.3396 1.3279 -0.1818 31 1 4.9064 2.9350 -0.8392 32 1 7.0779 2.2617 0.9798 33 1 6.6684 3.8596 0.2937 34 1 6.9265 1.1608 2.8479 35 1 8.6430 0.9161 4.6222 36 1 9.3576 2.9313 5.8816 37 1 6.5615 7.5933 4.0316 38 1 3.9106 3.0291 3.1363 39 1 4.9036 1.5785 2.7804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342858249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:01 Heat of formation + Delta-G solvation = 29.979930 kcal Electronic energy + Delta-G solvation = -20595.789184 eV Core-core repulsion = 17504.501010 eV Total energy + Delta-G solvation = -3091.288174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.58936 -38.10479 -36.57167 -34.00308 -33.44043 -31.23593 -30.37279 -28.53595 -28.08329 -25.83784 -25.33363 -22.39252 -21.43440 -20.78439 -20.06118 -19.84142 -17.51658 -17.08070 -16.13138 -15.81563 -15.20393 -14.78544 -14.57546 -14.29136 -13.93094 -13.64674 -13.42705 -13.21715 -12.72736 -12.54141 -12.15253 -11.83046 -11.69590 -11.50621 -11.21135 -11.07788 -11.02922 -11.02497 -10.70496 -10.53521 -10.38315 -9.97458 -9.89613 -9.36740 -9.32199 -8.28721 -8.18226 -7.52448 -7.27576 -6.33380 -4.52023 1.95737 2.62781 2.98562 3.10508 3.14678 3.18534 3.67387 3.95775 4.54895 4.68749 4.77493 4.90758 4.98394 5.01699 5.22283 5.26601 5.35670 5.51960 5.65001 5.78588 5.86679 5.99152 6.03708 6.12370 6.16538 6.32616 6.34661 6.35366 6.43726 6.46586 6.72126 6.78271 6.88989 7.19633 7.21322 7.46375 7.52862 7.65469 7.74866 8.20179 8.27867 8.70454 8.93667 10.13021 10.32933 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.003915 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.031614 B = 7150.521374 C = 7680.051621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.147 4.147 3 C 0.087 3.913 4 O -0.375 6.375 5 C 0.086 3.914 6 H 0.077 0.923 7 C -0.151 4.151 8 C 0.050 3.950 9 N -0.463 5.463 10 C 0.312 3.688 11 C -0.345 4.345 12 C -0.049 4.049 13 C -0.284 4.284 14 C 0.261 3.739 15 C -0.428 4.428 16 H 0.086 0.914 17 C 0.066 3.934 18 N -0.702 5.702 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.273 1.273 23 N -0.456 5.456 24 C 0.056 3.944 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.273 0.727 38 H 0.085 0.915 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 -6.817 -8.144 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.165 4.165 3 C 0.011 3.989 4 O -0.294 6.294 5 C 0.027 3.973 6 H 0.095 0.905 7 C -0.189 4.189 8 C -0.078 4.078 9 N -0.186 5.186 10 C 0.074 3.926 11 C -0.371 4.371 12 C -0.073 4.073 13 C -0.307 4.307 14 C 0.135 3.865 15 C -0.458 4.458 16 H 0.104 0.896 17 C -0.160 4.160 18 N -0.322 5.322 19 Si 0.730 3.270 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.198 1.198 23 N -0.169 5.169 24 C -0.072 4.072 25 H 0.121 0.879 26 H 0.116 0.884 27 H 0.133 0.867 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.716 -5.401 -8.299 13.191 hybrid contribution 0.817 -0.878 0.404 1.266 sum -7.898 -6.278 -7.895 12.811 Atomic orbital electron populations 1.23820 0.95587 1.02172 1.00637 1.22787 0.95641 0.98352 0.99754 1.21557 0.88990 0.95615 0.92766 1.87930 1.44256 1.37169 1.59997 1.23034 0.91431 0.86860 0.95940 0.90504 1.22925 0.95792 1.01499 0.98718 1.22789 0.96056 0.99135 0.89817 1.61374 1.05890 1.50422 1.00865 1.19679 0.91660 0.89042 0.92264 1.21534 1.09430 0.97796 1.08352 1.20700 0.95276 0.96787 0.94582 1.21731 1.08173 0.94326 1.06482 1.18480 0.87715 0.91553 0.88707 1.19654 1.19403 0.90850 1.15915 0.89637 1.26113 0.94319 1.00682 0.94936 1.70187 1.15988 1.25467 1.20545 0.86293 0.79496 0.81019 0.80166 1.18439 1.19832 1.19819 1.68402 1.13686 1.27639 1.07139 1.23108 0.92449 0.96523 0.95093 0.87933 0.88429 0.86665 0.92411 0.92725 0.90645 0.91112 0.92960 0.90408 0.89047 0.88760 0.88277 0.91563 0.89691 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 14.31 29.01 0.42 -1.13 16 2 C -0.15 -1.47 9.89 -36.03 -0.36 -1.82 16 3 C 0.09 0.96 6.22 36.01 0.22 1.19 16 4 O -0.37 -5.39 10.07 -35.23 -0.35 -5.75 16 5 C 0.09 1.29 3.51 -24.87 -0.09 1.20 16 6 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 7 C -0.15 -2.15 6.69 -25.37 -0.17 -2.32 16 8 C 0.05 0.90 6.49 -2.76 -0.02 0.88 16 9 N -0.46 -9.98 5.36 -169.21 -0.91 -10.89 16 10 C 0.31 7.81 5.84 -155.32 -0.91 6.90 16 11 C -0.34 -8.02 7.90 -38.87 -0.31 -8.33 16 12 C -0.05 -1.13 10.15 -39.39 -0.40 -1.53 16 13 C -0.28 -7.13 9.83 -38.65 -0.38 -7.51 16 14 C 0.26 7.26 6.55 -85.00 -0.56 6.71 16 15 C -0.43 -11.53 9.14 -37.74 -0.34 -11.87 16 16 H 0.09 2.15 7.85 -52.49 -0.41 1.74 16 17 C 0.07 1.69 5.50 -17.34 -0.10 1.59 16 18 N -0.70 -18.97 11.46 55.55 0.64 -18.34 16 19 Si 0.91 18.67 29.56 -169.99 -5.02 13.64 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 N -0.46 -12.88 7.89 -10.33 -0.08 -12.96 16 24 C 0.06 1.04 6.12 -1.90 -0.01 1.03 16 25 H 0.10 0.71 8.06 -52.49 -0.42 0.28 16 26 H 0.10 0.74 7.90 -52.49 -0.41 0.32 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.56 7.83 -51.93 -0.41 0.15 16 30 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 31 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.05 0.97 6.65 -51.92 -0.35 0.62 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.09 1.94 7.02 -52.49 -0.37 1.57 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.27 6.69 8.29 -40.82 -0.34 6.36 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.06 1.15 6.61 -51.93 -0.34 0.80 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -30.20 326.69 -9.44 -39.64 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.63 Total: 4.75 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.99 Total: -15.02 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.35 Total: -42.19 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.35 Total: -5.75 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.20 -9.44 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342858249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.620 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds