Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.42899 * 113.99629 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.64771 * 31.69742 * 5 4 3 7 7 C 1.54596 * 110.72517 * 268.54494 * 5 4 3 8 8 C 1.53997 * 105.14111 * 219.68456 * 7 5 4 9 9 N 1.47895 * 107.05651 * 358.78046 * 8 7 5 10 10 C 1.38820 * 110.99992 * 145.84785 * 9 8 7 11 11 C 1.39804 * 119.58215 * 300.11835 * 10 9 8 12 12 C 1.38590 * 119.49282 * 180.02562 * 11 10 9 13 13 C 1.38393 * 118.67995 * 359.97438 * 12 11 10 14 14 C 1.40547 * 119.14898 * 0.02562 * 13 12 11 15 15 C 1.41322 * 119.78336 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99675 * 0.02562 * 15 14 13 17 17 C 1.40030 * 120.00007 * 179.97438 * 15 14 13 18 18 N 1.30746 * 119.99679 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99722 * 180.02562 * 17 15 14 20 20 H 1.48489 * 109.47409 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47125 * 120.00529 * 19 17 15 22 22 H 1.48504 * 109.46901 * 240.00004 * 19 17 15 23 23 N 1.31957 * 119.58997 * 119.84901 * 10 9 8 24 24 C 1.48523 * 105.82497 * 25.32384 * 9 8 7 25 25 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 29 29 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 30 30 H 1.09001 * 110.31020 * 338.60579 * 7 5 4 31 31 H 1.09007 * 110.30938 * 100.77170 * 7 5 4 32 32 H 1.09008 * 109.91276 * 118.13074 * 8 7 5 33 33 H 1.09004 * 109.91595 * 239.41975 * 8 7 5 34 34 H 1.07997 * 120.25083 * 359.97438 * 11 10 9 35 35 H 1.07998 * 120.66195 * 180.02562 * 12 11 10 36 36 H 1.08001 * 120.42423 * 179.97438 * 13 12 11 37 37 H 0.97001 * 119.99608 * 180.02562 * 18 17 15 38 38 H 1.08998 * 110.67245 * 202.36160 * 24 9 8 39 39 H 1.08998 * 110.66434 * 79.22935 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 1 3.2949 3.3108 0.8204 7 6 5.1135 2.3649 0.0665 8 6 6.2857 2.9973 0.8396 9 7 5.7580 3.4259 2.1531 10 6 6.7186 3.2846 3.1452 11 6 7.2562 2.0217 3.4106 12 6 8.2147 1.8827 4.4019 13 6 8.6130 3.0074 5.1030 14 6 8.0352 4.2497 4.7897 15 6 8.4316 5.4068 5.4976 16 1 9.1765 5.3347 6.2762 17 6 7.8592 6.6469 5.1888 18 7 6.9577 6.7342 4.2458 19 14 8.3837 8.1764 6.1241 20 1 9.4099 7.8119 7.1335 21 1 8.9524 9.1666 5.1746 22 1 7.2052 8.7669 6.8080 23 7 7.1167 4.3449 3.8225 24 6 4.5839 2.5566 2.4211 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 2.4755 1.4868 -0.9927 29 1 1.3855 2.1161 0.2660 30 1 5.3396 1.3279 -0.1818 31 1 4.9064 2.9350 -0.8392 32 1 7.0779 2.2617 0.9798 33 1 6.6684 3.8596 0.2937 34 1 6.9265 1.1608 2.8479 35 1 8.6430 0.9161 4.6222 36 1 9.3576 2.9313 5.8816 37 1 6.5615 7.5933 4.0316 38 1 3.9106 3.0291 3.1363 39 1 4.9036 1.5785 2.7804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342858249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = 11.759103 kcal Electronic energy + Delta-G solvation = -20596.579298 eV Core-core repulsion = 17504.501010 eV Total energy + Delta-G solvation = -3092.078288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14650 -39.57788 -37.98654 -35.47750 -34.70293 -32.84348 -32.24856 -30.11573 -29.55971 -27.31330 -26.67121 -23.98543 -23.34097 -22.01309 -21.58869 -20.78448 -19.39651 -18.40024 -17.55841 -16.85755 -16.71489 -16.44525 -16.27807 -15.69086 -15.38567 -15.08899 -14.81537 -14.43190 -14.27089 -13.95155 -13.53732 -13.43652 -13.09230 -12.79206 -12.77721 -12.77172 -12.57371 -12.41874 -12.31944 -11.87908 -11.75850 -11.59285 -11.19666 -10.82789 -10.21359 -10.12462 -10.04236 -9.46150 -9.09264 -8.23403 -6.53607 0.73902 1.12195 1.25388 1.41233 1.51605 1.57200 2.23138 2.50911 2.79313 3.15517 3.56675 3.66258 3.90469 3.99136 4.09396 4.18306 4.22940 4.30675 4.44582 4.50088 4.57711 4.60417 4.70935 4.72542 4.83768 4.86150 4.91484 4.96278 4.96908 5.03985 5.09188 5.30906 5.60787 5.67267 5.73099 5.78556 5.86189 5.88749 6.22171 6.27668 6.41591 6.77584 6.97661 8.19960 8.45015 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.003915 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.031614 B = 7150.521374 C = 7680.051621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.171 4.171 3 C 0.082 3.918 4 O -0.390 6.390 5 C 0.099 3.901 6 H 0.088 0.912 7 C -0.136 4.136 8 C 0.048 3.952 9 N -0.485 5.485 10 C 0.302 3.698 11 C -0.342 4.342 12 C -0.047 4.047 13 C -0.303 4.303 14 C 0.227 3.773 15 C -0.462 4.462 16 H 0.093 0.907 17 C 0.020 3.980 18 N -0.744 5.744 19 Si 0.989 3.011 20 H -0.253 1.253 21 H -0.266 1.266 22 H -0.267 1.267 23 N -0.497 5.497 24 C 0.055 3.945 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.278 0.722 38 H 0.070 0.930 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 -7.339 -8.938 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.190 4.190 3 C 0.006 3.994 4 O -0.309 6.309 5 C 0.041 3.959 6 H 0.106 0.894 7 C -0.174 4.174 8 C -0.079 4.079 9 N -0.208 5.208 10 C 0.064 3.936 11 C -0.368 4.368 12 C -0.072 4.072 13 C -0.326 4.326 14 C 0.102 3.898 15 C -0.492 4.492 16 H 0.111 0.889 17 C -0.202 4.202 18 N -0.365 5.365 19 Si 0.809 3.191 20 H -0.176 1.176 21 H -0.191 1.191 22 H -0.191 1.191 23 N -0.211 5.211 24 C -0.073 4.073 25 H 0.136 0.864 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.434 -5.961 -9.113 14.408 hybrid contribution 0.948 -0.857 0.594 1.410 sum -8.486 -6.818 -8.519 13.823 Atomic orbital electron populations 1.24056 0.95126 1.03382 0.98125 1.22792 0.96231 0.97855 1.02080 1.21778 0.88362 0.96598 0.92655 1.87904 1.45132 1.36564 1.61305 1.22793 0.91897 0.87767 0.93472 0.89439 1.22859 0.93487 1.02245 0.98806 1.22847 0.97488 0.98963 0.88588 1.61329 1.06114 1.51972 1.01414 1.20121 0.91959 0.89127 0.92441 1.21802 1.08855 0.97925 1.08186 1.21118 0.94607 0.97859 0.93579 1.21938 1.08859 0.94256 1.07505 1.18980 0.88415 0.93086 0.89317 1.20036 1.20525 0.91878 1.16807 0.88933 1.27068 0.93807 1.03769 0.95576 1.70305 1.17309 1.26638 1.22272 0.85057 0.79211 0.76158 0.78647 1.17583 1.19102 1.19146 1.68367 1.14877 1.29519 1.08323 1.23078 0.91574 0.95204 0.97406 0.86384 0.87566 0.86837 0.91026 0.91976 0.89494 0.88319 0.93780 0.90896 0.86945 0.84990 0.86899 0.91082 0.91144 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 14.31 67.78 0.97 -1.45 16 2 C -0.17 -3.08 9.89 25.64 0.25 -2.82 16 3 C 0.08 1.63 6.22 71.24 0.44 2.07 16 4 O -0.39 -10.55 10.07 -148.98 -1.50 -12.05 16 5 C 0.10 2.84 3.51 31.80 0.11 2.95 16 6 H 0.09 2.31 7.88 -2.39 -0.02 2.29 16 7 C -0.14 -3.57 6.69 31.47 0.21 -3.36 16 8 C 0.05 1.71 6.49 86.45 0.56 2.28 16 9 N -0.48 -21.20 5.36 -689.26 -3.69 -24.90 16 10 C 0.30 15.40 5.84 133.42 0.78 16.18 16 11 C -0.34 -15.83 7.90 22.73 0.18 -15.65 16 12 C -0.05 -2.15 10.15 22.39 0.23 -1.92 16 13 C -0.30 -15.38 9.83 22.87 0.22 -15.16 16 14 C 0.23 13.08 6.55 40.18 0.26 13.35 16 15 C -0.46 -25.63 9.14 23.46 0.21 -25.42 16 16 H 0.09 4.76 7.85 -2.91 -0.02 4.74 16 17 C 0.02 1.06 5.50 85.29 0.47 1.53 16 18 N -0.74 -41.53 11.46 21.84 0.25 -41.28 16 19 Si 0.99 38.76 29.56 68.60 2.03 40.79 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 21 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 23 N -0.50 -29.09 7.89 -186.58 -1.47 -30.56 16 24 C 0.05 2.05 6.12 86.65 0.53 2.58 16 25 H 0.12 1.30 8.06 -2.91 -0.02 1.27 16 26 H 0.11 1.32 7.90 -2.91 -0.02 1.29 16 27 H 0.11 2.04 8.06 -2.91 -0.02 2.01 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.13 7.83 -2.39 -0.02 1.11 16 30 H 0.09 2.12 8.07 -2.39 -0.02 2.10 16 31 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.04 1.61 6.65 -2.38 -0.02 1.60 16 33 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 34 H 0.11 4.65 7.02 -2.91 -0.02 4.63 16 35 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 36 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 37 H 0.28 14.06 8.29 -92.71 -0.77 13.29 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.05 1.95 6.61 -2.39 -0.02 1.94 16 Total: -1.00 -67.39 326.69 2.08 -65.31 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 1.03 Total: 27.53 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 5.44 Total: -24.85 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -4.91 Total: -96.74 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.50 Total: -12.05 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -67.39 2.08 -65.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342858249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.070 kcal (2) G-P(sol) polarization free energy of solvation -67.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds