Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00108 * 2 1 4 4 O 1.42895 * 109.46866 * 135.00258 * 3 2 1 5 5 C 1.42905 * 113.99769 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.78532 * 328.20733 * 5 4 3 7 7 C 1.54594 * 110.72510 * 91.45415 * 5 4 3 8 8 C 1.53991 * 105.14285 * 140.31352 * 7 5 4 9 9 N 1.47905 * 107.22505 * 1.12969 * 8 7 5 10 10 C 1.38822 * 110.99920 * 214.25696 * 9 8 7 11 11 C 1.39798 * 119.58902 * 59.87125 * 10 9 8 12 12 C 1.38591 * 119.48835 * 179.97438 * 11 10 9 13 13 C 1.38383 * 118.68381 * 0.02562 * 12 11 10 14 14 C 1.40553 * 119.15268 * 359.97438 * 13 12 11 15 15 C 1.41312 * 119.78596 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00528 * 359.97438 * 15 14 13 17 17 C 1.40025 * 119.99974 * 179.97438 * 15 14 13 18 18 N 1.30749 * 119.99999 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46905 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46599 * 119.99989 * 19 17 15 22 22 H 1.48493 * 109.47259 * 240.00174 * 19 17 15 23 23 N 1.31956 * 119.57890 * 239.60372 * 10 9 8 24 24 C 1.48813 * 105.67450 * 334.90354 * 9 8 7 25 25 H 1.07995 * 120.00469 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99657 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99953 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46992 * 15.00395 * 3 2 1 29 29 H 1.08999 * 109.46951 * 255.00349 * 3 2 1 30 30 H 1.09005 * 110.30718 * 21.40157 * 7 5 4 31 31 H 1.09001 * 110.39460 * 259.27537 * 7 5 4 32 32 H 1.09002 * 109.91707 * 120.58029 * 8 7 5 33 33 H 1.09002 * 109.91668 * 241.67819 * 8 7 5 34 34 H 1.07998 * 120.25253 * 0.02562 * 11 10 9 35 35 H 1.08003 * 120.65403 * 180.02562 * 12 11 10 36 36 H 1.08010 * 120.42568 * 180.02562 * 13 12 11 37 37 H 0.96999 * 119.99973 * 179.97438 * 18 17 15 38 38 H 1.08998 * 110.51915 * 280.54171 * 24 9 8 39 39 H 1.09009 * 110.83927 * 157.56590 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9085 2.4348 1.0320 6 1 3.9543 2.9323 0.0632 7 6 3.3438 3.3879 2.1102 8 6 4.5805 3.9828 2.8088 9 7 5.7740 3.4184 2.1420 10 6 6.8090 3.2324 3.0483 11 6 6.6222 2.3861 4.1452 12 6 7.6570 2.2015 5.0485 13 6 8.8517 2.8663 4.8348 14 6 8.9780 3.7039 3.7132 15 6 10.1922 4.3888 3.4818 16 1 11.0192 4.2682 4.1658 17 6 10.3232 5.2239 2.3655 18 7 9.3223 5.3696 1.5370 19 14 11.9280 6.1300 2.0599 20 1 12.8966 5.7974 3.1353 21 1 12.4863 5.7186 0.7468 22 1 11.6769 7.5935 2.0545 23 7 7.9585 3.8526 2.8607 24 6 5.3328 2.1235 1.5564 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3856 2.1160 0.2660 29 1 2.4755 1.4867 -0.9927 30 1 2.7361 2.8329 2.8249 31 1 2.7541 4.1788 1.6468 32 1 4.5775 5.0682 2.7084 33 1 4.5795 3.7076 3.8635 34 1 5.6791 1.8794 4.2871 35 1 7.5333 1.5516 5.9022 36 1 9.6768 2.7426 5.5207 37 1 9.4129 5.9484 0.7639 38 1 5.2999 1.3491 2.3227 39 1 5.9876 1.8250 0.7376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342858252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = 29.890581 kcal Electronic energy + Delta-G solvation = -20596.265024 eV Core-core repulsion = 17504.972976 eV Total energy + Delta-G solvation = -3091.292048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.57187 -38.10589 -36.56312 -34.00489 -33.44242 -31.24042 -30.37284 -28.52057 -28.08942 -25.84440 -25.33292 -22.40338 -21.43280 -20.74145 -20.12983 -19.80092 -17.51512 -17.15018 -16.27020 -15.28820 -15.23122 -14.97515 -14.66755 -14.35002 -14.05858 -13.68795 -13.26635 -13.11532 -12.76399 -12.57082 -12.10729 -11.78890 -11.69029 -11.55063 -11.27228 -11.09604 -11.03097 -11.02792 -10.70511 -10.53606 -10.35786 -9.98023 -9.85532 -9.37555 -9.34425 -8.28415 -8.18487 -7.52520 -7.27502 -6.33412 -4.52084 1.95020 2.62683 2.98532 3.10432 3.14595 3.18501 3.67048 3.95694 4.55340 4.67765 4.76416 4.91674 4.98435 5.00152 5.22723 5.26809 5.35290 5.51101 5.65478 5.77699 5.86732 5.99620 6.03736 6.12380 6.16884 6.31980 6.34261 6.35610 6.43642 6.46182 6.72068 6.78240 6.88961 7.19287 7.21297 7.45554 7.52862 7.65519 7.74880 8.20164 8.27936 8.70431 8.93643 10.12994 10.32881 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.003871 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.992387 B = 7231.496972 C = 7774.251752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C 0.087 3.913 4 O -0.375 6.375 5 C 0.086 3.914 6 H 0.077 0.923 7 C -0.150 4.150 8 C 0.050 3.950 9 N -0.462 5.462 10 C 0.313 3.687 11 C -0.345 4.345 12 C -0.049 4.049 13 C -0.284 4.284 14 C 0.261 3.739 15 C -0.427 4.427 16 H 0.086 0.914 17 C 0.066 3.934 18 N -0.702 5.702 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.273 1.273 23 N -0.456 5.456 24 C 0.056 3.944 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.273 0.727 38 H 0.059 0.941 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.257 -4.432 -3.422 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.164 4.164 3 C 0.011 3.989 4 O -0.293 6.293 5 C 0.027 3.973 6 H 0.095 0.905 7 C -0.189 4.189 8 C -0.078 4.078 9 N -0.185 5.185 10 C 0.074 3.926 11 C -0.371 4.371 12 C -0.073 4.073 13 C -0.307 4.307 14 C 0.135 3.865 15 C -0.458 4.458 16 H 0.104 0.896 17 C -0.161 4.161 18 N -0.322 5.322 19 Si 0.730 3.270 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.198 1.198 23 N -0.169 5.169 24 C -0.072 4.072 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.911 -3.551 -4.628 13.262 hybrid contribution 0.186 -0.511 1.129 1.253 sum -11.725 -4.061 -3.499 12.892 Atomic orbital electron populations 1.23813 0.95582 1.02127 1.00794 1.22803 0.95631 0.98414 0.99599 1.21556 0.89240 0.95539 0.92610 1.87929 1.44202 1.37097 1.60100 1.23018 0.90807 0.84987 0.98449 0.90469 1.22914 0.98132 0.99056 0.98785 1.22778 0.87782 1.00240 0.97009 1.61428 1.04450 1.21303 1.31360 1.19673 0.91497 0.92746 0.88705 1.21537 1.00380 1.12332 1.02868 1.20699 0.93371 0.96695 0.96579 1.21732 0.98149 1.07617 1.03208 1.18481 0.91598 0.89458 0.86922 1.19650 0.97558 1.21321 1.07285 0.89634 1.26113 0.97743 0.96545 0.95649 1.70187 1.29242 1.24946 1.07816 0.86294 0.82022 0.79437 0.79228 1.18435 1.19821 1.19829 1.68401 0.97670 1.22359 1.28433 1.23155 0.92811 0.91504 0.99750 0.87938 0.88488 0.86593 0.92859 0.92250 0.90661 0.91127 0.90442 0.92981 0.89045 0.88761 0.88276 0.91560 0.92250 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 14.31 29.01 0.42 -1.11 16 2 C -0.15 -1.45 9.89 -36.03 -0.36 -1.81 16 3 C 0.09 0.96 6.23 36.01 0.22 1.18 16 4 O -0.37 -5.38 10.07 -35.23 -0.35 -5.73 16 5 C 0.09 1.29 3.51 -24.87 -0.09 1.20 16 6 H 0.08 1.08 7.89 -51.93 -0.41 0.67 16 7 C -0.15 -2.16 6.69 -25.38 -0.17 -2.33 16 8 C 0.05 0.90 6.48 -2.75 -0.02 0.88 16 9 N -0.46 -9.98 5.36 -168.97 -0.91 -10.89 16 10 C 0.31 7.82 5.85 -155.32 -0.91 6.91 16 11 C -0.34 -8.03 7.90 -38.87 -0.31 -8.34 16 12 C -0.05 -1.13 10.15 -39.40 -0.40 -1.53 16 13 C -0.28 -7.13 9.83 -38.66 -0.38 -7.51 16 14 C 0.26 7.26 6.55 -85.00 -0.56 6.71 16 15 C -0.43 -11.53 9.14 -37.74 -0.34 -11.87 16 16 H 0.09 2.15 7.85 -52.49 -0.41 1.74 16 17 C 0.07 1.69 5.50 -17.34 -0.10 1.59 16 18 N -0.70 -18.97 11.46 55.55 0.64 -18.33 16 19 Si 0.91 18.66 29.56 -169.99 -5.02 13.64 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 N -0.46 -12.88 7.89 -10.33 -0.08 -12.96 16 24 C 0.06 1.03 6.14 -1.74 -0.01 1.02 16 25 H 0.10 0.70 8.06 -52.49 -0.42 0.27 16 26 H 0.10 0.71 7.90 -52.48 -0.41 0.30 16 27 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.05 0.53 7.86 -51.93 -0.41 0.12 16 29 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 30 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.05 0.97 6.65 -51.93 -0.35 0.62 16 34 H 0.09 1.95 7.03 -52.49 -0.37 1.58 16 35 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 36 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 37 H 0.27 6.69 8.29 -40.82 -0.34 6.36 16 38 H 0.06 1.14 6.61 -51.93 -0.34 0.80 16 39 H 0.08 1.61 8.14 -51.92 -0.42 1.18 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -30.20 326.75 -9.44 -39.63 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.64 Total: 4.73 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.00 Total: -15.01 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.35 Total: -42.18 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.35 Total: -5.73 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.20 -9.44 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342858252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.525 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds