Wall clock time and date at job start Mon Mar 30 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00108 * 2 1 4 4 O 1.42895 * 109.46866 * 135.00258 * 3 2 1 5 5 C 1.42905 * 113.99769 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.78532 * 328.20733 * 5 4 3 7 7 C 1.54594 * 110.72510 * 91.45415 * 5 4 3 8 8 C 1.53991 * 105.14285 * 140.31352 * 7 5 4 9 9 N 1.47905 * 107.22505 * 1.12969 * 8 7 5 10 10 C 1.38822 * 110.99920 * 214.25696 * 9 8 7 11 11 C 1.39798 * 119.58902 * 59.87125 * 10 9 8 12 12 C 1.38591 * 119.48835 * 179.97438 * 11 10 9 13 13 C 1.38383 * 118.68381 * 0.02562 * 12 11 10 14 14 C 1.40553 * 119.15268 * 359.97438 * 13 12 11 15 15 C 1.41312 * 119.78596 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00528 * 359.97438 * 15 14 13 17 17 C 1.40025 * 119.99974 * 179.97438 * 15 14 13 18 18 N 1.30749 * 119.99999 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46905 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46599 * 119.99989 * 19 17 15 22 22 H 1.48493 * 109.47259 * 240.00174 * 19 17 15 23 23 N 1.31956 * 119.57890 * 239.60372 * 10 9 8 24 24 C 1.48813 * 105.67450 * 334.90354 * 9 8 7 25 25 H 1.07995 * 120.00469 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99657 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99953 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46992 * 15.00395 * 3 2 1 29 29 H 1.08999 * 109.46951 * 255.00349 * 3 2 1 30 30 H 1.09005 * 110.30718 * 21.40157 * 7 5 4 31 31 H 1.09001 * 110.39460 * 259.27537 * 7 5 4 32 32 H 1.09002 * 109.91707 * 120.58029 * 8 7 5 33 33 H 1.09002 * 109.91668 * 241.67819 * 8 7 5 34 34 H 1.07998 * 120.25253 * 0.02562 * 11 10 9 35 35 H 1.08003 * 120.65403 * 180.02562 * 12 11 10 36 36 H 1.08010 * 120.42568 * 180.02562 * 13 12 11 37 37 H 0.96999 * 119.99973 * 179.97438 * 18 17 15 38 38 H 1.08998 * 110.51915 * 280.54171 * 24 9 8 39 39 H 1.09009 * 110.83927 * 157.56590 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9085 2.4348 1.0320 6 1 3.9543 2.9323 0.0632 7 6 3.3438 3.3879 2.1102 8 6 4.5805 3.9828 2.8088 9 7 5.7740 3.4184 2.1420 10 6 6.8090 3.2324 3.0483 11 6 6.6222 2.3861 4.1452 12 6 7.6570 2.2015 5.0485 13 6 8.8517 2.8663 4.8348 14 6 8.9780 3.7039 3.7132 15 6 10.1922 4.3888 3.4818 16 1 11.0192 4.2682 4.1658 17 6 10.3232 5.2239 2.3655 18 7 9.3223 5.3696 1.5370 19 14 11.9280 6.1300 2.0599 20 1 12.8966 5.7974 3.1353 21 1 12.4863 5.7186 0.7468 22 1 11.6769 7.5935 2.0545 23 7 7.9585 3.8526 2.8607 24 6 5.3328 2.1235 1.5564 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3856 2.1160 0.2660 29 1 2.4755 1.4867 -0.9927 30 1 2.7361 2.8329 2.8249 31 1 2.7541 4.1788 1.6468 32 1 4.5775 5.0682 2.7084 33 1 4.5795 3.7076 3.8635 34 1 5.6791 1.8794 4.2871 35 1 7.5333 1.5516 5.9022 36 1 9.6768 2.7426 5.5207 37 1 9.4129 5.9484 0.7639 38 1 5.2999 1.3491 2.3227 39 1 5.9876 1.8250 0.7376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342858252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:02 Heat of formation + Delta-G solvation = 11.667839 kcal Electronic energy + Delta-G solvation = -20597.055221 eV Core-core repulsion = 17504.972976 eV Total energy + Delta-G solvation = -3092.082246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12947 -39.57723 -37.97729 -35.47779 -34.70057 -32.84861 -32.25019 -30.10678 -29.56006 -27.31577 -26.66866 -23.99300 -23.34112 -21.99346 -21.60264 -20.77087 -19.39625 -18.41681 -17.67115 -16.83052 -16.58420 -16.40027 -16.07421 -15.78302 -15.62612 -15.16018 -14.84041 -14.38348 -14.13839 -13.94048 -13.55277 -13.49155 -12.99989 -12.80627 -12.77314 -12.73156 -12.57842 -12.51692 -12.32375 -11.89512 -11.75952 -11.57304 -11.19839 -10.79693 -10.22042 -10.13004 -10.04660 -9.46358 -9.09232 -8.23461 -6.53703 0.73717 1.12106 1.25583 1.41143 1.51538 1.57116 2.23040 2.50609 2.79167 3.15627 3.56118 3.65604 3.90786 3.99206 4.10442 4.19529 4.21245 4.30577 4.44812 4.48811 4.56641 4.62849 4.70741 4.72196 4.83673 4.85981 4.91000 4.96628 4.98601 5.02829 5.08968 5.30830 5.60695 5.67828 5.72923 5.78482 5.85260 5.88706 6.22131 6.27850 6.41565 6.77517 6.97598 8.19881 8.44940 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.003871 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.992387 B = 7231.496972 C = 7774.251752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.173 4.173 3 C 0.082 3.918 4 O -0.390 6.390 5 C 0.099 3.901 6 H 0.088 0.912 7 C -0.135 4.135 8 C 0.048 3.952 9 N -0.485 5.485 10 C 0.302 3.698 11 C -0.342 4.342 12 C -0.047 4.047 13 C -0.303 4.303 14 C 0.227 3.773 15 C -0.462 4.462 16 H 0.093 0.907 17 C 0.020 3.980 18 N -0.744 5.744 19 Si 0.989 3.011 20 H -0.253 1.253 21 H -0.267 1.267 22 H -0.266 1.266 23 N -0.497 5.497 24 C 0.054 3.946 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.279 0.721 38 H 0.050 0.950 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.631 -4.553 -3.520 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C 0.006 3.994 4 O -0.309 6.309 5 C 0.041 3.959 6 H 0.106 0.894 7 C -0.174 4.174 8 C -0.079 4.079 9 N -0.208 5.208 10 C 0.064 3.936 11 C -0.368 4.368 12 C -0.072 4.072 13 C -0.325 4.325 14 C 0.102 3.898 15 C -0.492 4.492 16 H 0.111 0.889 17 C -0.202 4.202 18 N -0.365 5.365 19 Si 0.809 3.191 20 H -0.176 1.176 21 H -0.192 1.192 22 H -0.191 1.191 23 N -0.211 5.211 24 C -0.073 4.073 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.321 -3.696 -4.717 14.607 hybrid contribution 0.453 -0.578 1.178 1.389 sum -12.868 -4.274 -3.539 14.013 Atomic orbital electron populations 1.24054 0.94974 1.03454 0.97903 1.22784 0.96303 0.97792 1.02283 1.21775 0.88634 0.96749 0.92221 1.87905 1.45081 1.36656 1.61262 1.22781 0.88781 0.85389 0.98973 0.89363 1.22848 0.96492 0.99521 0.98490 1.22836 0.88156 1.00076 0.96822 1.61382 1.05110 1.22956 1.31388 1.20112 0.91565 0.92309 0.89629 1.21803 1.01267 1.11535 1.02181 1.21116 0.92375 0.96274 0.97399 1.21938 0.99605 1.07933 1.03063 1.18982 0.92241 0.90544 0.88043 1.20032 0.97909 1.22672 1.08612 0.88922 1.27069 1.01589 0.96848 0.94719 1.70304 1.31741 1.25957 1.08523 0.85059 0.76910 0.77875 0.79243 1.17571 1.19163 1.19091 1.68367 0.98929 1.24151 1.29628 1.23130 0.95185 0.90057 0.98933 0.86453 0.87289 0.87166 0.91351 0.91613 0.89608 0.88294 0.90913 0.93835 0.86975 0.84994 0.86888 0.91077 0.93181 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 14.31 67.78 0.97 -1.30 16 2 C -0.17 -3.12 9.89 25.64 0.25 -2.87 16 3 C 0.08 1.63 6.23 71.24 0.44 2.07 16 4 O -0.39 -10.56 10.07 -148.98 -1.50 -12.06 16 5 C 0.10 2.84 3.51 31.80 0.11 2.95 16 6 H 0.09 2.32 7.89 -2.39 -0.02 2.30 16 7 C -0.14 -3.57 6.69 31.47 0.21 -3.36 16 8 C 0.05 1.72 6.48 86.44 0.56 2.28 16 9 N -0.48 -21.23 5.36 -688.49 -3.69 -24.92 16 10 C 0.30 15.43 5.85 133.42 0.78 16.21 16 11 C -0.34 -15.86 7.90 22.73 0.18 -15.68 16 12 C -0.05 -2.15 10.15 22.39 0.23 -1.92 16 13 C -0.30 -15.38 9.83 22.87 0.22 -15.15 16 14 C 0.23 13.08 6.55 40.18 0.26 13.34 16 15 C -0.46 -25.62 9.14 23.46 0.21 -25.41 16 16 H 0.09 4.77 7.85 -2.91 -0.02 4.75 16 17 C 0.02 1.06 5.50 85.29 0.47 1.53 16 18 N -0.74 -41.54 11.46 21.84 0.25 -41.29 16 19 Si 0.99 38.77 29.56 68.60 2.03 40.80 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 23 N -0.50 -29.09 7.89 -186.59 -1.47 -30.56 16 24 C 0.05 2.03 6.14 86.59 0.53 2.56 16 25 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 26 H 0.11 1.22 7.90 -2.91 -0.02 1.20 16 27 H 0.11 2.06 8.06 -2.91 -0.02 2.03 16 28 H 0.07 1.15 7.86 -2.39 -0.02 1.13 16 29 H 0.07 1.20 8.11 -2.39 -0.02 1.18 16 30 H 0.09 2.12 8.07 -2.38 -0.02 2.10 16 31 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.04 1.60 6.65 -2.39 -0.02 1.58 16 34 H 0.11 4.66 7.03 -2.91 -0.02 4.63 16 35 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 36 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 37 H 0.28 14.06 8.29 -92.71 -0.77 13.29 16 38 H 0.05 1.93 6.61 -2.39 -0.02 1.92 16 39 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 Total: -1.00 -67.46 326.75 2.08 -65.38 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 1.03 Total: 27.42 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 5.44 Total: -24.76 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -4.92 Total: -96.77 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.50 Total: -12.06 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -67.46 2.08 -65.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342858252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.046 kcal (2) G-P(sol) polarization free energy of solvation -67.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds