Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 H 1.09000 * 109.46765 * 54.27946 * 3 2 1 5 5 C 1.50698 * 109.46784 * 174.27638 * 3 2 1 6 6 H 1.07995 * 119.99931 * 114.30400 * 5 3 2 7 7 C 1.37877 * 120.00386 * 294.30543 * 5 3 2 8 8 N 1.31516 * 120.00483 * 153.95012 * 7 5 3 9 9 Si 1.86798 * 119.99814 * 333.95768 * 7 5 3 10 10 H 1.48506 * 109.47277 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47510 * 59.99809 * 9 7 5 12 12 H 1.48504 * 109.47234 * 299.99821 * 9 7 5 13 13 N 1.46494 * 109.47165 * 294.27487 * 3 2 1 14 14 C 1.34777 * 119.99619 * 85.00489 * 13 3 2 15 15 O 1.21277 * 120.00494 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99912 * 180.02562 * 14 13 3 17 17 H 1.09003 * 110.73026 * 56.58660 * 16 14 13 18 18 C 1.54371 * 110.82467 * 180.02562 * 16 14 13 19 19 C 1.51221 * 105.12066 * 144.51616 * 18 16 14 20 20 C 1.38738 * 130.69253 * 162.86432 * 19 18 16 21 21 C 1.38573 * 118.56041 * 180.02562 * 20 19 18 22 22 C 1.38230 * 118.98674 * 359.97438 * 21 20 19 23 23 N 1.31688 * 120.80581 * 0.02562 * 22 21 20 24 24 C 1.32300 * 122.02824 * 359.97438 * 23 22 21 25 25 C 1.51477 * 130.14620 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.47129 * 60.00030 * 1 2 3 27 27 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47278 * 300.00001 * 1 2 3 29 29 H 1.09001 * 109.46974 * 239.99719 * 2 1 3 30 30 H 1.09003 * 109.46638 * 119.99787 * 2 1 3 31 31 H 0.97001 * 119.99755 * 354.97126 * 8 7 5 32 32 H 0.96992 * 120.00248 * 265.00247 * 13 3 2 33 33 H 1.09001 * 110.30889 * 263.42799 * 18 16 14 34 34 H 1.09002 * 110.30898 * 25.50132 * 18 16 14 35 35 H 1.07999 * 120.72178 * 0.02562 * 20 19 18 36 36 H 1.07996 * 120.51369 * 180.02562 * 21 20 19 37 37 H 1.07997 * 119.60000 * 180.02562 * 22 21 20 38 38 H 1.08995 * 110.29506 * 78.25218 * 25 24 23 39 39 H 1.09006 * 110.29073 * 316.12391 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9850 0.8343 5 6 3.5403 1.4448 0.1417 6 1 4.1586 1.8021 -0.6685 7 6 4.1236 0.9909 1.3056 8 7 5.3468 0.5083 1.2834 9 14 3.1764 1.0611 2.9141 10 1 4.0189 0.5165 4.0090 11 1 1.9371 0.2518 2.7945 12 1 2.8198 2.4705 3.2175 13 7 1.6674 2.0922 -1.2590 14 6 0.4516 2.6586 -1.3910 15 8 -0.3342 2.6301 -0.4676 16 6 0.0680 3.3264 -2.6864 17 1 0.1597 2.6312 -3.5209 18 6 -1.3624 3.9012 -2.6050 19 6 -1.3213 5.1776 -3.4148 20 6 -2.3473 5.9407 -3.9532 21 6 -2.0196 7.0841 -4.6643 22 6 -0.6875 7.4229 -4.8111 23 7 0.2605 6.6746 -4.2862 24 6 -0.0114 5.5762 -3.6008 25 6 0.9199 4.5909 -2.9252 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8117 0.4038 0.4385 32 1 2.2957 2.1147 -1.9976 33 1 -2.0767 3.2011 -3.0381 34 1 -1.6252 4.1167 -1.5693 35 1 -3.3790 5.6500 -3.8211 36 1 -2.7930 7.7015 -5.0966 37 1 -0.4209 8.3121 -5.3630 38 1 1.2726 4.9940 -1.9759 39 1 1.7636 4.3610 -3.5760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347149167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -15.332331 kcal Electronic energy + Delta-G solvation = -20917.410711 eV Core-core repulsion = 17824.157650 eV Total energy + Delta-G solvation = -3093.253061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94987 -39.24994 -36.19975 -35.04207 -32.81482 -32.45157 -31.49622 -29.55770 -27.87265 -27.19521 -24.27423 -22.41412 -21.95332 -21.73754 -20.03938 -19.47288 -17.85422 -16.78926 -16.71583 -16.36416 -15.62218 -14.94565 -14.66039 -14.58464 -13.75862 -13.45474 -13.37084 -13.05386 -12.93728 -12.74856 -12.51207 -12.37960 -12.25961 -11.78815 -11.66189 -11.35063 -11.19936 -10.81664 -10.71282 -10.44013 -9.88102 -9.86866 -9.80094 -9.42244 -9.24517 -9.15385 -8.80692 -8.26224 -8.11348 -6.62131 -4.21184 0.95820 1.14420 3.12286 3.40175 3.45396 3.60540 3.63526 3.82858 3.87272 4.43072 4.45657 4.57585 4.78320 4.79200 5.02925 5.04345 5.07408 5.14247 5.43540 5.50153 5.64446 5.70586 5.74161 5.90140 5.98669 6.05903 6.08308 6.11655 6.14573 6.27048 6.56381 6.68296 6.78304 6.95102 7.03498 7.35330 7.39771 7.66886 7.87262 8.23943 8.45787 8.69221 8.94975 9.43683 10.75790 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.004253 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.055591 B = 6581.839917 C = 7018.711728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.040 0.960 5 C -0.630 4.630 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.281 1.281 13 N -0.698 5.698 14 C 0.511 3.489 15 O -0.547 6.547 16 C -0.111 4.111 17 H 0.105 0.895 18 C -0.064 4.064 19 C -0.142 4.142 20 C -0.066 4.066 21 C -0.177 4.177 22 C 0.098 3.902 23 N -0.480 5.480 24 C 0.123 3.877 25 C -0.060 4.060 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.272 0.728 32 H 0.393 0.607 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.156 0.844 38 H 0.097 0.903 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 8.414 -11.776 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.147 3.853 4 H 0.058 0.942 5 C -0.667 4.667 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.199 1.199 12 H -0.207 1.207 13 N -0.345 5.345 14 C 0.296 3.704 15 O -0.426 6.426 16 C -0.133 4.133 17 H 0.123 0.877 18 C -0.102 4.102 19 C -0.144 4.144 20 C -0.092 4.092 21 C -0.197 4.197 22 C -0.060 4.060 23 N -0.188 5.188 24 C -0.014 4.014 25 C -0.098 4.098 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.173 0.827 38 H 0.116 0.884 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.217 8.327 -9.579 18.325 hybrid contribution -0.692 0.171 -2.074 2.193 sum -13.909 8.498 -11.653 20.037 Atomic orbital electron populations 1.21895 0.97440 0.98841 1.01942 1.22233 0.93652 0.99757 1.01395 1.19021 0.95799 0.88470 0.82055 0.94179 1.21980 0.89731 1.50099 1.04882 0.91890 1.25593 0.96597 0.91663 1.02068 1.70871 1.13911 1.36374 1.30589 0.84232 0.76049 0.77627 0.76500 1.20861 1.19935 1.20683 1.46263 1.14371 1.55619 1.18206 1.20019 0.82788 0.79123 0.88494 1.90654 1.50761 1.60022 1.41165 1.22027 0.96121 0.97070 0.98060 0.87717 1.20867 0.95923 0.92311 1.01064 1.21553 0.94902 0.98709 0.99266 1.21063 0.99266 0.93697 0.95175 1.22046 0.98176 0.98133 1.01333 1.22616 0.88593 0.98038 0.96713 1.66855 1.38426 1.04881 1.08648 1.21835 0.93723 0.92222 0.93665 1.20916 0.96766 0.91036 1.01110 0.93271 0.95142 0.93022 0.93170 0.91891 0.91845 0.77356 0.90089 0.87675 0.84987 0.84683 0.82696 0.88442 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.53 37.16 0.32 -2.52 16 2 C -0.13 -2.88 5.37 -26.73 -0.14 -3.02 16 3 C 0.25 5.79 1.84 -69.09 -0.13 5.67 16 4 H 0.04 1.02 6.12 -51.93 -0.32 0.70 16 5 C -0.63 -16.63 8.92 -34.44 -0.31 -16.94 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.89 -25.89 13.70 55.43 0.76 -25.13 16 9 Si 1.03 24.76 26.56 -169.99 -4.51 20.24 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.24 6.34 56.52 0.36 -5.88 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.70 -13.31 5.03 -54.93 -0.28 -13.59 16 14 C 0.51 8.99 5.65 -10.98 -0.06 8.93 16 15 O -0.55 -11.26 12.64 5.56 0.07 -11.18 16 16 C -0.11 -1.47 3.47 -90.36 -0.31 -1.78 16 17 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 18 C -0.06 -0.80 6.10 -26.91 -0.16 -0.96 16 19 C -0.14 -1.75 6.16 -104.21 -0.64 -2.39 16 20 C -0.07 -0.67 10.17 -39.27 -0.40 -1.07 16 21 C -0.18 -1.62 10.12 -39.46 -0.40 -2.02 16 22 C 0.10 1.04 11.18 -17.62 -0.20 0.84 16 23 N -0.48 -6.57 10.35 -9.19 -0.10 -6.67 16 24 C 0.12 1.67 7.32 -82.03 -0.60 1.07 16 25 C -0.06 -0.79 6.31 -26.81 -0.17 -0.96 16 26 H 0.05 0.94 5.63 -51.93 -0.29 0.65 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.07 7.89 -51.93 -0.41 0.66 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.46 5.77 -51.93 -0.30 1.16 16 31 H 0.27 7.83 8.73 -40.82 -0.36 7.48 16 32 H 0.39 6.72 8.53 -40.82 -0.35 6.37 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.50 6.98 -51.93 -0.36 1.14 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.10 1.41 7.89 -51.93 -0.41 1.00 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -31.09 315.49 -8.04 -39.13 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.43 Total: 6.34 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.30 Total: -13.89 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.39 Total: -45.39 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -4.51 Total: 20.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.09 -8.04 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347149167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.794 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds