Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 H 1.09000 * 109.46765 * 54.27946 * 3 2 1 5 5 C 1.50698 * 109.46784 * 174.27638 * 3 2 1 6 6 H 1.07995 * 119.99931 * 114.30400 * 5 3 2 7 7 C 1.37877 * 120.00386 * 294.30543 * 5 3 2 8 8 N 1.31516 * 120.00483 * 153.95012 * 7 5 3 9 9 Si 1.86798 * 119.99814 * 333.95768 * 7 5 3 10 10 H 1.48506 * 109.47277 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47510 * 59.99809 * 9 7 5 12 12 H 1.48504 * 109.47234 * 299.99821 * 9 7 5 13 13 N 1.46494 * 109.47165 * 294.27487 * 3 2 1 14 14 C 1.34777 * 119.99619 * 85.00489 * 13 3 2 15 15 O 1.21277 * 120.00494 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99912 * 180.02562 * 14 13 3 17 17 H 1.09003 * 110.73026 * 56.58660 * 16 14 13 18 18 C 1.54371 * 110.82467 * 180.02562 * 16 14 13 19 19 C 1.51221 * 105.12066 * 144.51616 * 18 16 14 20 20 C 1.38738 * 130.69253 * 162.86432 * 19 18 16 21 21 C 1.38573 * 118.56041 * 180.02562 * 20 19 18 22 22 C 1.38230 * 118.98674 * 359.97438 * 21 20 19 23 23 N 1.31688 * 120.80581 * 0.02562 * 22 21 20 24 24 C 1.32300 * 122.02824 * 359.97438 * 23 22 21 25 25 C 1.51477 * 130.14620 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.47129 * 60.00030 * 1 2 3 27 27 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47278 * 300.00001 * 1 2 3 29 29 H 1.09001 * 109.46974 * 239.99719 * 2 1 3 30 30 H 1.09003 * 109.46638 * 119.99787 * 2 1 3 31 31 H 0.97001 * 119.99755 * 354.97126 * 8 7 5 32 32 H 0.96992 * 120.00248 * 265.00247 * 13 3 2 33 33 H 1.09001 * 110.30889 * 263.42799 * 18 16 14 34 34 H 1.09002 * 110.30898 * 25.50132 * 18 16 14 35 35 H 1.07999 * 120.72178 * 0.02562 * 20 19 18 36 36 H 1.07996 * 120.51369 * 180.02562 * 21 20 19 37 37 H 1.07997 * 119.60000 * 180.02562 * 22 21 20 38 38 H 1.08995 * 110.29506 * 78.25218 * 25 24 23 39 39 H 1.09006 * 110.29073 * 316.12391 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9850 0.8343 5 6 3.5403 1.4448 0.1417 6 1 4.1586 1.8021 -0.6685 7 6 4.1236 0.9909 1.3056 8 7 5.3468 0.5083 1.2834 9 14 3.1764 1.0611 2.9141 10 1 4.0189 0.5165 4.0090 11 1 1.9371 0.2518 2.7945 12 1 2.8198 2.4705 3.2175 13 7 1.6674 2.0922 -1.2590 14 6 0.4516 2.6586 -1.3910 15 8 -0.3342 2.6301 -0.4676 16 6 0.0680 3.3264 -2.6864 17 1 0.1597 2.6312 -3.5209 18 6 -1.3624 3.9012 -2.6050 19 6 -1.3213 5.1776 -3.4148 20 6 -2.3473 5.9407 -3.9532 21 6 -2.0196 7.0841 -4.6643 22 6 -0.6875 7.4229 -4.8111 23 7 0.2605 6.6746 -4.2862 24 6 -0.0114 5.5762 -3.6008 25 6 0.9199 4.5909 -2.9252 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8117 0.4038 0.4385 32 1 2.2957 2.1147 -1.9976 33 1 -2.0767 3.2011 -3.0381 34 1 -1.6252 4.1167 -1.5693 35 1 -3.3790 5.6500 -3.8211 36 1 -2.7930 7.7015 -5.0966 37 1 -0.4209 8.3121 -5.3630 38 1 1.2726 4.9940 -1.9759 39 1 1.7636 4.3610 -3.5760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347149167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -35.660771 kcal Electronic energy + Delta-G solvation = -20918.292218 eV Core-core repulsion = 17824.157650 eV Total energy + Delta-G solvation = -3094.134568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92632 -40.61133 -37.49319 -36.54812 -34.47871 -33.63846 -33.09851 -30.60471 -29.05107 -28.77304 -25.42826 -24.19764 -22.89152 -22.80098 -21.60930 -21.01905 -19.71542 -18.15046 -17.64209 -17.37499 -17.06759 -16.16709 -15.95932 -15.77370 -15.37033 -14.77986 -14.66072 -14.41722 -14.33234 -13.97623 -13.87810 -13.80829 -13.64147 -13.32614 -12.66416 -12.62349 -12.47062 -12.40034 -12.26142 -12.25451 -11.76349 -11.55422 -11.21889 -10.74221 -10.64800 -10.40029 -10.27988 -9.78078 -9.67671 -8.80488 -6.39447 0.12511 0.33620 1.46562 1.48970 1.69485 1.73282 2.42092 2.44623 2.79161 2.93743 2.95613 3.44003 3.65937 3.89083 3.93833 4.07404 4.20361 4.26195 4.33969 4.40998 4.42955 4.58783 4.60489 4.67160 4.76371 4.81403 4.89371 4.97958 5.07163 5.12828 5.22415 5.24598 5.29783 5.32982 5.57247 5.70182 5.73514 5.78308 6.04241 6.56213 6.87798 7.02710 7.28581 7.46035 8.56318 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.004253 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.055591 B = 6581.839917 C = 7018.711728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 C 0.254 3.746 4 H 0.021 0.979 5 C -0.627 4.627 6 H 0.042 0.958 7 C 0.007 3.993 8 N -0.917 5.917 9 Si 1.062 2.938 10 H -0.281 1.281 11 H -0.254 1.254 12 H -0.275 1.275 13 N -0.700 5.700 14 C 0.513 3.487 15 O -0.575 6.575 16 C -0.098 4.098 17 H 0.132 0.868 18 C -0.058 4.058 19 C -0.153 4.153 20 C -0.068 4.068 21 C -0.165 4.165 22 C 0.087 3.913 23 N -0.512 5.512 24 C 0.096 3.904 25 C -0.057 4.057 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.262 0.738 32 H 0.403 0.597 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.182 0.818 38 H 0.075 0.925 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.440 9.109 -13.219 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.149 3.851 4 H 0.039 0.961 5 C -0.664 4.664 6 H 0.060 0.940 7 C -0.196 4.196 8 N -0.550 5.550 9 Si 0.884 3.116 10 H -0.207 1.207 11 H -0.178 1.178 12 H -0.201 1.201 13 N -0.348 5.348 14 C 0.300 3.700 15 O -0.456 6.456 16 C -0.120 4.120 17 H 0.150 0.850 18 C -0.096 4.096 19 C -0.155 4.155 20 C -0.094 4.094 21 C -0.184 4.184 22 C -0.070 4.070 23 N -0.222 5.222 24 C -0.040 4.040 25 C -0.096 4.096 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.237 0.763 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.177 0.823 36 H 0.191 0.809 37 H 0.199 0.801 38 H 0.093 0.907 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.949 9.030 -11.052 21.402 hybrid contribution 0.134 0.082 -1.734 1.741 sum -15.815 9.112 -12.786 22.285 Atomic orbital electron populations 1.21773 0.95393 1.00340 1.01539 1.22119 0.95391 0.98322 1.00897 1.18712 0.93391 0.89583 0.83381 0.96144 1.22170 0.91600 1.48665 1.03966 0.93995 1.26637 0.96709 0.91303 1.04948 1.70961 1.15089 1.38915 1.30053 0.83789 0.75895 0.78225 0.73668 1.20696 1.17850 1.20107 1.46105 1.15492 1.56026 1.17201 1.20658 0.81586 0.78103 0.89646 1.90640 1.51431 1.60845 1.42654 1.21956 0.96797 0.97161 0.96060 0.85008 1.20783 0.95502 0.93118 1.00167 1.21594 0.95070 0.98918 0.99892 1.21476 1.00107 0.93489 0.94303 1.22472 0.98426 0.97691 0.99807 1.23204 0.89094 0.98398 0.96315 1.66821 1.40165 1.05489 1.09679 1.21800 0.94286 0.92909 0.95048 1.20818 0.97258 0.91164 1.00315 0.92812 0.92641 0.94272 0.92756 0.93328 0.92900 0.76263 0.88097 0.89756 0.82255 0.80892 0.80064 0.90677 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 8.53 71.98 0.61 -4.40 16 2 C -0.13 -5.51 5.37 30.60 0.16 -5.35 16 3 C 0.25 11.80 1.84 44.25 0.08 11.88 16 4 H 0.02 1.05 6.12 -2.39 -0.01 1.04 16 5 C -0.63 -33.71 8.92 25.60 0.23 -33.48 16 6 H 0.04 2.38 7.96 -2.91 -0.02 2.36 16 7 C 0.01 0.39 5.15 84.65 0.44 0.83 16 8 N -0.92 -54.80 13.70 21.45 0.29 -54.50 16 9 Si 1.06 50.24 26.56 68.60 1.82 52.06 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.25 -11.14 6.34 99.48 0.63 -10.51 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.70 -26.60 5.03 -446.11 -2.24 -28.84 16 14 C 0.51 17.74 5.65 87.66 0.49 18.24 16 15 O -0.58 -23.42 12.64 -3.02 -0.04 -23.46 16 16 C -0.10 -2.48 3.47 -10.62 -0.04 -2.52 16 17 H 0.13 2.64 8.14 -2.39 -0.02 2.63 16 18 C -0.06 -1.35 6.10 30.48 0.19 -1.17 16 19 C -0.15 -3.47 6.16 -19.59 -0.12 -3.59 16 20 C -0.07 -1.16 10.17 22.47 0.23 -0.93 16 21 C -0.16 -2.39 10.12 22.35 0.23 -2.17 16 22 C 0.09 1.63 11.18 84.71 0.95 2.58 16 23 N -0.51 -13.47 10.35 -182.97 -1.89 -15.37 16 24 C 0.10 2.53 7.32 42.72 0.31 2.84 16 25 C -0.06 -1.50 6.31 30.55 0.19 -1.31 16 26 H 0.05 1.96 5.63 -2.39 -0.01 1.94 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.56 7.89 -2.39 -0.02 1.54 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.05 2.21 5.77 -2.39 -0.01 2.19 16 31 H 0.26 15.62 8.73 -92.71 -0.81 14.81 16 32 H 0.40 13.71 8.53 -92.71 -0.79 12.92 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.35 6.98 -2.39 -0.02 2.33 16 35 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.07 2.26 7.89 -2.39 -0.02 2.24 16 39 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -68.33 315.49 2.05 -66.27 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.16 Total: 22.38 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 3.95 Total: -18.55 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -3.84 Total: -98.71 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.04 Total: -23.46 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 1.82 Total: 52.06 kcal Total: -68.33 2.05 -66.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347149167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.612 kcal (2) G-P(sol) polarization free energy of solvation -68.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds